Gene
RNA
| Item | Value |
|---|---|
| gene id | rapgef1b |
| gene name | LOC106569917 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 15149438 ~ 15225332 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| rap guanine nucleotide exchange factor 1-like isoform X9 |
| id | description |
|---|---|
| K06277 | RAPGEF1, GRF2; Rap guanine nucleotide exchange factor 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036976898.1 | False | 4303 | mRNA | 0.55 | 26 | 15149438 | 15225331 |
| XM_036976897.1 | True | 4711 | mRNA | 0.55 | 27 | 15149438 | 15225332 |
15,100,000
15,110,000
15,120,000
15,130,000
15,140,000
15,150,000
15,160,000
15,170,000
15,180,000
15,180,000
15,190,000
15,200,000
15,210,000
15,220,000
15,230,000
15,240,000
15,250,000
15,260,000
NC_048569.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110523287 | LOC106569911 | coding | downstream | 11411 | 15135601 ~ 15138027 (-) |
| LOC118964537 | LOC106569911 | coding | downstream | 13959 | 15134692 ~ 15135479 (-) |
| LOC118964536 | LOC106596987 | coding | downstream | 14933 | 15133867 ~ 15134505 (-) |
| LOC118936652 | LOC106569911 | coding | downstream | 15979 | 15081830 ~ 15136742 (-) |
| LOC118936653 | LOC106569911 | coding | downstream | 20072 | 15124103 ~ 15129366 (-) |
| setx | LOC106569805 | coding | upstream | 385014 | 15610346 ~ 15679579 (-) |
| LOC110523302 | NA | coding | upstream | 468273 | 15693396 ~ 15707607 (-) |
| dolpp1 | dolpp1 | coding | upstream | 498457 | 15723789 ~ 15734869 (-) |
| miga2 | miga2 | coding | upstream | 514741 | 15740073 ~ 15752753 (-) |
| spout1 | spout1 | coding | upstream | 545573 | 15770905 ~ 15775789 (-) |
| G371285 | NA | non-coding | downstream | 437 | 15148547 ~ 15149001 (-) |
| G371286 | NA | non-coding | downstream | 9365 | 15119804 ~ 15140073 (-) |
| G371356 | NA | non-coding | upstream | 26582 | 15251914 ~ 15252125 (-) |
| G371364 | NA | non-coding | upstream | 28845 | 15254177 ~ 15254802 (-) |
| G371849 | NA | non-coding | upstream | 57628 | 15282960 ~ 15283473 (-) |
| G371854 | NA | non-coding | upstream | 70316 | 15295648 ~ 15295975 (-) |
| G371935 | NA | non-coding | upstream | 235943 | 15461275 ~ 15467100 (-) |
| G371294 | LOC106569911 | other | downstream | 24649 | 15123475 ~ 15124789 (-) |
| LOC110524957 | LOC106569957 | other | downstream | 154279 | 14988147 ~ 14995197 (-) |
| G370635 | NA | other | downstream | 720847 | 14427338 ~ 14428591 (-) |
| G370333 | NA | other | downstream | 940733 | 14207190 ~ 14208705 (-) |
| G368921 | NA | other | downstream | 2443346 | 12705566 ~ 12706092 (-) |
| G372122 | NA | other | upstream | 750274 | 15975606 ~ 15976116 (-) |
| G372123 | NA | other | upstream | 753170 | 15978502 ~ 15981215 (-) |
| LOC110523341 | LOC106569324 | other | upstream | 1708903 | 16909582 ~ 16942359 (-) |
| G373228 | LOC106569424 | other | upstream | 1898705 | 17124037 ~ 17125807 (-) |
