rapgef1b (LOC106569917)


Basic Information

Item Value
gene id rapgef1b
gene name LOC106569917
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15149438 ~ 15225332 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976898.1
GGAGGTGCAGTTGTGCATCATGCCGAGGACGCGCGGGGTCAAGGCAGCGCTCCTGTGTTGGACTCTCCGCTCAGTGAAAATTGCTTGGAGACCGACAGAAACAGTTTCACACATCGATGTGTGTGCCACAAATCTGGTCTCGTACCTCCAACGAATTCATCTTACTGACACATcgAGTGAAATCACAGCTGGTTACGAAATGTCGGGGAAAATAGAGAGTAAGCAAGactcGCAGCgctcccacctctcctccttcacCATGAAGCTGATGGACAAGTTCCACTCTCCCAAGATCAAGAGGACGCCATCAAAGAAGGGCAAGCAGTTGCAGGTCGAACCTGTGGTCAAGAGCCAAGAGAAACCCGtcaacaagAAGGTGAGTCGgctggaggagcaggagaaggaggTGGTGAGCGCGCTGCGCTACTTCAAGACCATCGTGGACAAGATGGTGGTGGAGAAGAAGGTGCTGGAGATGCTGCCTGGCTCGGCCAGCAAGGTGCTGGAGGCTATTCTACCTCTGGTGCAGGTGGAGGCCCGGATAACACACAAtTCGGCTGTGTCGTCGTGTCACAACCGGGTGTACCAGAGCCTTGCCAACCTGATCCGCTGGTCCGACCACGTCATGCTGGACGGCATCAACCTTGATGACAAGGACAACGTGGTCGCGGTCACGACAGTCATCAAAGCCGTCCTGGATGGGGTCAAGGAGCTGGTCAAACTCACCATAGAGAAACAGGAGCAACCCTCCCCCACCACACCCAACAGACCCCCACCACCACCTATCACTACACCAGAGAGCAGGTCAGAGTTGCCACTGACAGAACGGGAGAGGGAGATCCTGAGTAAGACCCCGCTCACCGAGGCTGTGACGGACATGGCAGAGGAGGACGTAGCTCCGCCCAAACCCCCCCTCCCTGGCCTGAAAATGGATGCGCTCAGCCCTCCTCCAGCTTTGCCCCCAAAGAAGCGTCAGTCGGCCTCGTCGCCCACCCGTGTGGCAGTGGTGGCCACCATGAGCCGCGGCTCCAGCCTGCCCTGCAGCGTCCACAGTCAGcaGCAGGACTATGAGCAGGAGTTCCTCCAGAGGCGTTTCTCAGGGGGCAGCCAGTCGTATGGGTGCGACTCTCCGCGCCTCTCGCCCTACAGCAGCATGGGGAAGCTCAGCAGGTCTGAAGAGCAGCTCTGCTCCATGgaacaggacagtggacagtgCTCCAGAAATACTAGCTGTGAGACACTGGACAACACAGAGAGTTACGACCCCGACTATGACTTCCTCCACCAGGACCTCGCTGTCTTCACAGGGGACCCCTCAGTGGTCATGTCCCTGTCCCCCCTCCCCGAGTCCCACAGTGAGTGCTCCTCCCCCGTGCCTCCTCACGCCCGGTTCAGGTCACCACCCGCCCCACACCAACAACAACCCCACCCACCCCAGTCTGAGTACTGGACCCCCCAGCCCGGTTCCCACATCATCCCCTTGCAACTGTCCCGCATCAGTGCTCCTCCAGCATTACCCCAGAAGAAGCGGCGCAGCTCCCAGGTTTCACCTTATCAGGACGGGTGTGGCTCCTCGGGGGGACCCCTCAACGAGAGGTCCCCTTCCCAATACGAAAACCTGTCGGAGGAGGAGCTGCTGCACCCCACGCCACCCTTCCCCCTCTTCACTCCCAACTCGCCCATGCCCCAGAGCAACGGGGGGGTGTTCGTGGCCCAGTACCTGGCTAGCGAGAACGCAGACCTGCCCTCTAGTCCACCGCCACTGCCTGAGAAGAAGAACAAGCACGTCCTGGCGTACATGCAGTTTGTGGAGGACTACTCAGAGCCCCAGCCCTCAGTGTTCTACCAGACCCCACAGAATGAGAGCATCTATGAGCAGAGGAACAAACGCTTCCAGGACGTCTATGGCCTCAACGACTCCTTCAGCAGCACCGACTCGGTCCACGAGCCCCTTCCCATACCCCTCTTCCCGCCCCCCGCCCTGCCCCCCAAGAAGAGGcagctgAGCGTCGACGAGGGTGGCGAGGGCGAGTATGTCAACCTGTACTCATCCAGCCAGGCCAATGGGGAGCTGGagctgcctccctgcctcctcaGACCAATCGTTGCTGACGATGTCATTCAAGACCCCGCCCCACAAATGCACTCCTCCAATAGCAAGGAGGCTCTGGACAAGGACAGCAGGAGGCAGAAGTCGACAGACTCAGTCCAGAGCGATGAGGAGGAAGTGGATGAGCTCTCTCTCATCGACCACAAAGAGATCATGTCCCGGATAACACTCAAACAGGAGaatGACGATGGACCTGATGTGCGTGCTGGATCAGGGGATATTCTGTTAGTCCACGCCACAGAGACAGACCGCAAAGATCTGGTGTTGTACTGTGAGGTCTTCCTGACCACATACAGGACCTTCATCAGCCCAGAGGACCTCATTAAGAAGCTCCACTACAGATACACCAGGTTCTGTCACAGTCCAGACACGTTTAAGAAGCGGGTTAGCAAGAACACCTTCTTTGTGCTCGTTAGACTGGTGGACGAACTGTGTCTGGTGGAGTTAACAGAGGACATCCTGAAGCAGCTGATGGACCTGGTGTTCAGGCTGGTGTGTAACGGCGAGCTGAGCCTGGCCCGCGTGCTCCGCAAGAACATCCTGGACAAGGTGGAGCAGAAGAAGCTGCTGCGCTGCACCAACTCCCTCAAGCCGCTGGCCGCCCGGGGCGTGTCCGCCAGGCCCGGAACGCTGCATGACTTCCGCAGCCATGAAATCGCAGATCAGCTCACGCTCCTGGATGCAGAACTTTTCTACAACATCGAGATTCCTGAGGTGTTGCTTTGGGCCAAGGAACAGAACGAAGAAAAGAGTCCCAATCTGACTCAGTTCACAGAGCACTTTAACAATATGAGCTACTGGGTGCGCTCTCTAATCATTCAGCAGGAGAAAGGCCAGGACAGAGAGAAGCTGCTCCTCAAGTTCATTAAGATCATGAAGCACTTAAGAAAGTTGAACAATTTCAACTCGTACTTGGCAATACTGTCTGCCCTGGACTCAGCCCCCATCCGCAGACTGGAGTGGCAGAAACAGACATCAGAGGGATTGGAGGAATACTGCACTTTGATTGACAGCTCGTCGTCTTTCCGAGTGTACCGGGCAGCTCTGGCCGACGTGGAGCCTCCATGCATCCCATACCTcGGTCTAATCCTGCAGGACCTGACCTTCGTCCACCTGGGGAACCCTGATCTCATCGATGGGAAGGTCAACTTCTCTAAGCGCTGGCAGCAGTTCAACATCTTGGACAGCATGAGGCGCTTCCAGCAAGTGCATTATGAGCTGAAGCGCAACGACGACATTGTGTGCTTCTTCAACGACTTCAGCGACCACCTGGCCGAGGAGGCGCTGTGGGAGCTCTCACTGAAGATCAAGCCTCGAAACATCACCCGGAGGCGGACAGAGCGCGAAGAGAAGACCTAGGGGGTGTAGGGGCACGGCGTGGTGCCCAAACCCGGGAACAGGTCCCGCCAAGGGACCTCCACTGTGTTACAGACACTAACTCCACTTTACTATGGacagacattcagacagacagacggacgggatagatggatggatggacacaaTCAGTTGGACCTAACTAACTTGGGAAGAGTGACTGACTAGGGCCGGACCAGAGCACATACAGTAGGTTGGAGGAAAAGACTGGTTTAAAATGACTCTGCACTGCTCTGCTACACTGGGATATTATGGGGGTTTTATGATTGACACTGCTGTTGGCAGGGGAGAAACTCCTAGCcaatgggaagagagagaaagacttgtATAAGAGACGTCatgtgaggaggatgtggagataCCGCTCCCCGTCCTCTCCCATTTTAGTGTGTAAGTGTGAGGTGAATGCTCCTCTACACCCTGATaccaacaccctattcccttttctTCCTCCCTAAATAGTGTGTGGCACCATTGGGTCAGCCCCTACTGCCCCCCTCCCCTGACTTAACTTCCCTCCAACATTGAAGGAAGATCAAGTTCCTTGTATCCATGTATCCATGGAATCCTCAGTATTCTGGACTGCAGTCTAGGAAATGGGAATTTGAGGGTTAGTAGAGGTGGACTGGACTTGTAGCAAGAGTGTATTTGGGATATTgtgtattattgttattattattaatcaTGTATGGTTGTGATGTATTATACAGTGCTCCTTTTGTTCTTAAAAAGGATGTTTATTATGCTATTAAGAGAAGCGCTCAGCTTCTACCCAAGTGCCATAATAATGTGCACTCTAAAAAGCAACGCAACAAA
>XM_036976897.1
AGGAGGTGCAGTTGTGCATCATGCCGAGGACGCGCGGGGTCAAGGCAGCGCTCCTGTGTTGGACTCTCCGCTCAGTGAAAATTGCTTGGAGACCGACAGAAACAGTTTCACACATCGATGTGTGTGCCACAAATCTGGTCTCGTACCTCCAACGAATTCATCTTACTGACACATGTGAGCCAAGAATAATCGAGGGAGACGCGTTGGTTTCTGGCTAGTTAagttttttactttttttttatatatatatttttttacagcgAGTGAAATCACAGCTGGTTACGAAATGTCGGGGAAAATAGAGAGTAAGCAAGactcGCAGCgctcccacctctcctccttcacCATGAAGCTGATGGACAAGTTCCACTCTCCCAAGATCAAGAGGACGCCATCAAAGAAGGGCAAGCAGTTGCAGGTCGAACCTGTGGTCAAGAGCCAAGAGAAACCCGtcaacaagAAGGTGAGTCGgctggaggagcaggagaaggaggTGGTGAGCGCGCTGCGCTACTTCAAGACCATCGTGGACAAGATGGTGGTGGAGAAGAAGGTGCTGGAGATGCTGCCTGGCTCGGCCAGCAAGGTGCTGGAGGCTATTCTACCTCTGGTGCAGGTGGAGGCCCGGATAACACACAAtTCGGCTGTGTCGTCGTGTCACAACCGGGTGTACCAGAGCCTTGCCAACCTGATCCGCTGGTCCGACCACGTCATGCTGGACGGCATCAACCTTGATGACAAGGACAACGTGGTCGCGGTCACGACAGTCATCAAAGCCGTCCTGGATGGGGTCAAGGAGCTGGTCAAACTCACCATAGAGAAACAGGAGCAACCCTCCCCCACCACACCCAACAGACCCCCACCACCACCTATCACTACACCAGAGAGCAGGTCAGAGTTGCCACTGACAGAACGGGAGAGGGAGATCCTGAGTAAGACCCCGCTCACCGAGGCTGTGACGGACATGGCAGAGGAGGACGTAGCTCCGCCCAAACCCCCCCTCCCTGGCCTGAAAATGGATGCGCTCAGCCCTCCTCCAGCTTTGCCCCCAAAGAAGCGTCAGTCGGCCTCGTCGCCCACCCGTGTGGCAGTGGTGGCCACCATGAGCCGCGGCTCCAGCCTGCCCTGCAGCGTCCACAGTCAGcaGCAGGACTATGAGCAGGAGTTCCTCCAGAGGCGTTTCTCAGGGGGCAGCCAGTCGTATGGGTGCGACTCTCCGCGCCTCTCGCCCTACAGCAGCATGGGGAAGCTCAGCAGGTCTGAAGAGCAGCTCTGCTCCATGgaacaggacagtggacagtgCTCCAGAAATACTAGCTGTGAGACACTGGACAACACAGAGAGTTACGACCCCGACTATGACTTCCTCCACCAGGACCTCGCTGTCTTCACAGGGGACCCCTCAGTGGTCATGTCCCTGTCCCCCCTCCCCGAGTCCCACAGTGAGTGCTCCTCCCCCGTGCCTCCTCACGCCCGGTTCAGGTCACCACCCGCCCCACACCAACAACAACCCCACCCACCCCAGTCTGAGTACTGGACCCCCCAGCCCGGTTCCCACATCATCCCCTTGCAACTGTCCCGCATCAGTGCTCCTCCAGCATTACCCCAGAAGAAGCGGCGCAGCTCCCAGGTTTCACCTTATCAGGACGGGTGTGGCTCCTCGGGGGGACCCCTCAACGAGAGGTCCCCTTCCCAATACGAAAACCTGTCGGAGGAGGAGCTGCTGCACCCCACGCCACCCTTCCCCCTCTTCACTCCCAACTCGCCCATGCCCCAGAGCAACGGGGGGGTGTTCGTGGCCCAGTACCTGGCTAGCGAGAACGCAGACCTGCCCTCTAGTCCACCGCCACTGCCTGAGAAGAAGAACAAGCACGTCCTGGCGTACATGCAGTTTGTGGAGGACTACTCAGAGCCCCAGCCCTCAGTGTTCTACCAGACCCCACAGAATGAGAGCATCTATGAGCAGAGGAACAAACGCTTCCAGGACGTCTATGGCCTCAACGACTCCTTCAGCAGCACCGACTCGGTCCACGAGCCCCTTCCCATACCCCTCTTCCCGCCCCCCGCCCTGCCCCCCAAGAAGAGGcagctggcctcccactcttcctccccctcttcctcctctctgtcgtGCCACCTCCAGCCGTCATTGGTGGTGGCGGCGGAGGAGGCGGGCTCTGGCCTAGGCCTCATCCTATCGGTTTCTAGCTCCTCCTACCTGAGTGGACATGCCTCGCTGACCACGCCCATGAGTTCAGACCAGGTCGCCTTGAGCAATGCCACTATATTGGATGGCAGCAGGGGCGGGCCCAACGGTTCCCTGGCCAACTCATTGGGCTCTGTGgccatctctcttcttcctcctgagACCACTTCTCTTCTAACTGACTCTCTCCTCCGCACCTCGGCAGTGAGCGTCGACGAGGGTGGCGAGGGCGAGTATGTCAACCTGTACTCATCCAGCCAGGCCAATGGGGAGCTGGagctgcctccctgcctcctcaGACCAATCGTTGCTGACGATGTCATTCAAGACCCCGCCCCACAAATGCACTCCTCCAATAGCAAGGAGGCTCTGGACAAGGACAGCAGGAGGCAGAAGTCGACAGACTCAGTCCAGAGCGATGAGGAGGAAGTGGATGAGCTCTCTCTCATCGACCACAAAGAGATCATGTCCCGGATAACACTCAAACAGGAGaatGACGATGGACCTGATGTGCGTGCTGGATCAGGGGATATTCTGTTAGTCCACGCCACAGAGACAGACCGCAAAGATCTGGTGTTGTACTGTGAGGTCTTCCTGACCACATACAGGACCTTCATCAGCCCAGAGGACCTCATTAAGAAGCTCCACTACAGATACACCAGGTTCTGTCACAGTCCAGACACGTTTAAGAAGCGGGTTAGCAAGAACACCTTCTTTGTGCTCGTTAGACTGGTGGACGAACTGTGTCTGGTGGAGTTAACAGAGGACATCCTGAAGCAGCTGATGGACCTGGTGTTCAGGCTGGTGTGTAACGGCGAGCTGAGCCTGGCCCGCGTGCTCCGCAAGAACATCCTGGACAAGGTGGAGCAGAAGAAGCTGCTGCGCTGCACCAACTCCCTCAAGCCGCTGGCCGCCCGGGGCGTGTCCGCCAGGCCCGGAACGCTGCATGACTTCCGCAGCCATGAAATCGCAGATCAGCTCACGCTCCTGGATGCAGAACTTTTCTACAACATCGAGATTCCTGAGGTGTTGCTTTGGGCCAAGGAACAGAACGAAGAAAAGAGTCCCAATCTGACTCAGTTCACAGAGCACTTTAACAATATGAGCTACTGGGTGCGCTCTCTAATCATTCAGCAGGAGAAAGGCCAGGACAGAGAGAAGCTGCTCCTCAAGTTCATTAAGATCATGAAGCACTTAAGAAAGTTGAACAATTTCAACTCGTACTTGGCAATACTGTCTGCCCTGGACTCAGCCCCCATCCGCAGACTGGAGTGGCAGAAACAGACATCAGAGGGATTGGAGGAATACTGCACTTTGATTGACAGCTCGTCGTCTTTCCGAGTGTACCGGGCAGCTCTGGCCGACGTGGAGCCTCCATGCATCCCATACCTcGGTCTAATCCTGCAGGACCTGACCTTCGTCCACCTGGGGAACCCTGATCTCATCGATGGGAAGGTCAACTTCTCTAAGCGCTGGCAGCAGTTCAACATCTTGGACAGCATGAGGCGCTTCCAGCAAGTGCATTATGAGCTGAAGCGCAACGACGACATTGTGTGCTTCTTCAACGACTTCAGCGACCACCTGGCCGAGGAGGCGCTGTGGGAGCTCTCACTGAAGATCAAGCCTCGAAACATCACCCGGAGGCGGACAGAGCGCGAAGAGAAGACCTAGGGGGTGTAGGGGCACGGCGTGGTGCCCAAACCCGGGAACAGGTCCCGCCAAGGGACCTCCACTGTGTTACAGACACTAACTCCACTTTACTATGGacagacattcagacagacagacggacgggatagatggatggatggacacaaTCAGTTGGACCTAACTAACTTGGGAAGAGTGACTGACTAGGGCCGGACCAGAGCACATACAGTAGGTTGGAGGAAAAGACTGGTTTAAAATGACTCTGCACTGCTCTGCTACACTGGGATATTATGGGGGTTTTATGATTGACACTGCTGTTGGCAGGGGAGAAACTCCTAGCcaatgggaagagagagaaagacttgtATAAGAGACGTCatgtgaggaggatgtggagataCCGCTCCCCGTCCTCTCCCATTTTAGTGTGTAAGTGTGAGGTGAATGCTCCTCTACACCCTGATaccaacaccctattcccttttctTCCTCCCTAAATAGTGTGTGGCACCATTGGGTCAGCCCCTACTGCCCCCCTCCCCTGACTTAACTTCCCTCCAACATTGAAGGAAGATCAAGTTCCTTGTATCCATGTATCCATGGAATCCTCAGTATTCTGGACTGCAGTCTAGGAAATGGGAATTTGAGGGTTAGTAGAGGTGGACTGGACTTGTAGCAAGAGTGTATTTGGGATATTgtgtattattgttattattattaatcaTGTATGGTTGTGATGTATTATACAGTGCTCCTTTTGTTCTTAAAAAGGATGTTTATTATGCTATTAAGAGAAGCGCTCAGCTTCTACCCAAGTGCCATAATAATGTGCACTCTAAAAAGCAACGCAACAAA

Function

NR:

description
rap guanine nucleotide exchange factor 1-like isoform X9

GO: NA

KEGG:

id description
K06277 RAPGEF1, GRF2; Rap guanine nucleotide exchange factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976898.1 False 4303 mRNA 0.55 26 15149438 15225331
XM_036976897.1 True 4711 mRNA 0.55 27 15149438 15225332

Neighbor

gene id symbol gene type direction distance location
LOC110523287 LOC106569911 coding downstream 11411 15135601 ~ 15138027 (-)
LOC118964537 LOC106569911 coding downstream 13959 15134692 ~ 15135479 (-)
LOC118964536 LOC106596987 coding downstream 14933 15133867 ~ 15134505 (-)
LOC118936652 LOC106569911 coding downstream 15979 15081830 ~ 15136742 (-)
LOC118936653 LOC106569911 coding downstream 20072 15124103 ~ 15129366 (-)
setx LOC106569805 coding upstream 385014 15610346 ~ 15679579 (-)
LOC110523302 NA coding upstream 468273 15693396 ~ 15707607 (-)
dolpp1 dolpp1 coding upstream 498457 15723789 ~ 15734869 (-)
miga2 miga2 coding upstream 514741 15740073 ~ 15752753 (-)
spout1 spout1 coding upstream 545573 15770905 ~ 15775789 (-)
G371285 NA non-coding downstream 437 15148547 ~ 15149001 (-)
G371286 NA non-coding downstream 9365 15119804 ~ 15140073 (-)
G371356 NA non-coding upstream 26582 15251914 ~ 15252125 (-)
G371364 NA non-coding upstream 28845 15254177 ~ 15254802 (-)
G371849 NA non-coding upstream 57628 15282960 ~ 15283473 (-)
G371854 NA non-coding upstream 70316 15295648 ~ 15295975 (-)
G371935 NA non-coding upstream 235943 15461275 ~ 15467100 (-)
G371294 LOC106569911 other downstream 24649 15123475 ~ 15124789 (-)
LOC110524957 LOC106569957 other downstream 154279 14988147 ~ 14995197 (-)
G370635 NA other downstream 720847 14427338 ~ 14428591 (-)
G370333 NA other downstream 940733 14207190 ~ 14208705 (-)
G368921 NA other downstream 2443346 12705566 ~ 12706092 (-)
G372122 NA other upstream 750274 15975606 ~ 15976116 (-)
G372123 NA other upstream 753170 15978502 ~ 15981215 (-)
LOC110523341 LOC106569324 other upstream 1708903 16909582 ~ 16942359 (-)
G373228 LOC106569424 other upstream 1898705 17124037 ~ 17125807 (-)

Expression


Co-expression Network