setx (LOC106569805)


Basic Information

Item Value
gene id setx
gene name LOC106569805
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15610346 ~ 15679579 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601888.2
gCAGTAAGTAAATCAGCAGGGGACAAGGGGAGTGAGAACATCACTGGTTATACTCCGAGGAGATTTTGTTCTAGAATGACCGCGTGTGTTTGCAGTGTAAACAGCACGTTAGCGAGAAATGTCATTGAATGTTCGTTATATTGGGAATCTATATATCTACCAAGATTAAATAAATTAGTGCACCGTTTGGATTAAGCACTTGTTCAACATGATGAGCATGTGCCGTTGGTGCACGTCATTGGGTGACGATGTTGCAAAACTGCTCCAGAGGTACTGTGCTGTGTCTTGGTTAGCAGAGGATGAGGAGGCAGTCAACGAGAAGGCGGCACTCAACGATGACCTCGATAAGTGCCTGGAGTGTGTGGTAGCGTACCATCGGGCGAAGGAGGAGTTACCTGGACTGCACCGGAGGCTATGGGAGTTGGAGACGTCCAGGCTCCTGGACTTGTTTTCACATGCAGCAAAAGACGCACAGCCGGCAAAGGACCTCAGCTATGTAGAAGAGGACGGCCGGGAAATCGGAGTGTCAAACATCAGCCCCGCAGTGTACGAGGACCGTCTTGGGGTTCCTCTGTCAGAGGTCCTCAAATACCCCTACCTGCTGGCATCCCCTGAATTGAGTGAAATGTGTGTTGAGGCAATTTGTAAGATGGAGGAATATAACTCCTTCCGGGTGTGTTCTAAAGATCCAGGGATCTACCTCCTCCTCGTCCACCCCAACGAGACGGTTAGGCGGTGGGCAATTGGTGCTGCAAGGTCGTTAGGTAAGGTGGACCGAGACGACTTTTATGACCTTCAGGACATCTTCACCTGCATGTTCTACATTGTCGAGCTGAGAATCCCCCAGAACTTCCCAGACATGGATACGTCCTATGATCCGACGACTAAGATGACATTGCTGCAACCGCATCTTTACGATTCCAAAAATGCAAAAAACTACTGGTTGGgTATCTGTATGCTTCTGACACAGCTGGATGCCCAGGCTATGGACTCCCTGTTCCTGGGGCCAGACAAACAGGCCAACATACTGCTCTGTATCCTTAATGCCTTGAAGGATGAAGAACCATCCAACGAGATGGATCCCTTCTGGCCAGTCTTGCAATGTTTTATGGTGATCTTGGATTGTTTGGGCTCCAGGTTTTGGGGTCAGATTGAGCCATCCCAAGCCTTCCAGGCCATCACACAAAGCCCTAGCTACTCTGGAGAGCTCGAAAGCATCAGACAACAAACCATGATATCACGGGTTAAAACAGAAACTACATATGATGATGACATGGTGACCTGCAGTCAGATGGTATATGACAGTAACACCAAAGTGAGCAAGGGAAGCAGACGCTCACGTGGTGTGGATAGCAATGTGGTCTATGAGGATATGAGTTCTCTGGTCAACCTCCTGCATTCAGACGTTGGACAGGCATTGCGTGTGCACGACAGCACATTTCTCTGGTTCATCCCCTTTGTAAAATCTGTTATGGACCTTGACGAACACAGCGTCCTATACATTACTGAGGTTGTCCACTACCTATGTGGGGAGATCAGCACAGACCTCCCGAAGCCCCAGGTTCGCATATGTGACAAGGTCACAGAGTTCTTCACTCTTATTCTGGTCCATATCATCGAATTGCACCTGGGGAGTGGCCGCATGAATATGCTCTATTACTgcgctcccaagtgggtgggcgtGTTAGTGAAATGTGCCACCCTGCCTGGTGACGCTTTCGTCCATACCTCGGAAGGTCCAGTTTCTCACTCTGTGTCTTCCACATCCTCCTTGAGGGTCAGTGTGCCCCGAAAGGTCTCTACTAGCAGGGCTGTTCCACAGGCATGCATGCATATCATCCGGTCCCTGCTGAAGGAAGGGACCAGGTTGAACCCCAACAGCAAGTGCCACCACTTCCTGAACCTTCTGAACAAGCACCTCAGAGATGGGCAACAGAGGGAGTGGAAGCTGATTAGGCCAGAGATTCAGGAGCTTCAGATCTGTTTGAAGGACTATGTCAAGATGATGATGAACAGGCCAACCATAAGTACTTCTCCACCTGAACCGCTGGACATTGAGGCAGGGCCTGTGGCACCAACCACACCACCACTTCAGTCAAGCAATGACCCCTCGGGACCTAGCAGCTTAGCTGAATTTAACCCTCCTATAAAACGGGAAGGGTTGTGGGATGATGTCGAAGGCAGTACATCTGGTGGTGGGGATTTTTCTGGAGTTCAGAGGGGGTGGGACATAAACATAGCGTTGGTGAAAAAGGAGCCCCTAACGCCTGAAGAGGAGTTTGTAGAGCCAACTAATGATTCTAGACCAACCCAAGACAACTTAACTTCCTTGAGGGCAGATCCAGAGAAAATACAGGTGATCAAATCCAGACTCGGCCAGCTTATGACCAAGAAGTCCAAGTCTGAGAGAGCGAGGCCCTCTGTAGGGCTCAGTGAATTCGGTAAAGAGGAGGCATCCAACCTCCAAGGCATTAGCAGACACCCTCCATGCCTCCAAGAATCCATCGACAATGTGCCTCTCTCTGTTTTAAAAAGTAATCTTAAAGGGAAAGAAGGCTCCAAATCCTCACGATATCGGAGTAAAGGAAACTCGAGACAATTTGACCGACCACTATCCCCACCAAAGTCAACTTCAGATGTAATTATTATATCTGATGATGAGGCTACATTAGATGTTGGTAGAGCAAGAAGGCCTGAGTGTTTGTCTGAGACCTCCCAAATAAAAAATGAACCAGATGCCTCTGACCAGAATCCTAGTCCCTGGCGTGATTACGATGGAGACATGAGTGAATCTCAGGTGTTTGAATTTGAAACACAGGAAGATATGGTGTCTGCATGGTCCAACAGAGATTCGGAAAGTAACATGCCACCCGAAAAGCCCAAAGACGATAGCCCTGTCAGTCCAACTTCAAGAGAGCCTTTATCAAGCTGGGAATGTGATACACAACCGATCTATGACGAGGATATCGAAAGAGCCTGTCAGCAGGTTGAGAAGGAGCTTGAGAAGCCTAAGACCCCACCTCAAGGGCTCAAACGAGCCATTGTTGTAAAAAAAAGAAATCTTCTTGTTGATGCAAAACCATTGGCCTCCAAATGCCTGAGCAAGAAACCTAACGTGGTAGAAAAACGAATCAAAGAGCCCGTGAAGGATGCTCCCCATGCAGTCACACCGCCATTGAGAAAAAGCAGTTCAACGGTACGTTCAAACAGACTGGAAACTGAGacacactcttccttaaccacatCAGCTATCTCACACAAAACGTCAACTCCAGCCATTGTCCCTCCTAAAAAAGTCAGAAAAGCCACAGAGCCTGTGTCCACAGCTGAGAAGCTTGGCCTTAAGAAGAAGGTGCGAAAGGCCTTTGATCTTTCCCAGGGATCACGTGATTCTGTTGGTGATCTGAGGCACCACGGCGCTACAGTCAATGTCCCACAGGCCAAGAAGCCGACCCGACAGACCAAGAGGTCGAAGGTGACCTTCCCTCAGAAGAGAGTGGTCAAAGGGAGTAACAAGCTGTTCCAGTTCTTCAGGCAGAGCAAGCAGGCATTGGGAGCCGGAATCTCTGAAAAGGCAGAGCCAATGAAGAGAAATCCGAAAAAGATAGATGAAATTCAAACTCCCAGTTTTGCTACAGAGGAGGACGATGAAGATGAGGACCTGCAGTGTTCCCAGCAAGATCCTGCCCGTCATGAGGAACAGCTGACGTTCAATCGCAGCTCTCAAAGAGCCAATGAGGACAAACCAGCATCCTCTAATACAGTGAGTAGTGTGTTGTCTAACATGGACAGGCAGATCTCTCCATACTTTCAAAGGAATGATGTCACACCTGGACCTTCTGGTCAAGTCCCCAAAAGCAATGAtggtgaagatgatgatgatgatgcagaCTGGATGCACCTCACCCAAATGGAGCCAACTGAAATGGAGATGTGCACGCAGTTTGAGGAAGAGGATTTCTTCTACACACAGCGGGACCCTGTAGATATGGACATTGACGCAGACAGCCAGAGGCCCTTTGAGGATAAAGGAGGGTCTTCAGACTTGACATGGTTTAAACAGGCAGACGAAGGGCAACAGGCTCCACTTGCCACACAGACTTTTAAGAAACCGGCTACTCCGCCACCCTCACGCTCTAACTTGACTCAGGATGATGAGCGCTTGTTCCTGAAACCAGGAATGTCTCCTATGTCAGTTAAAAAGGCCAAGCCGTCCACCACCAAGATCTACGCAACCTCAAGCTCCAGGAGTGCCTCCTTGGTGCAAGAGATGGAGAGGACTGCCAATGCTCCATTTTCGGCTTCTTCTGCACCTGCTGGAAGAGGTAGGCCTGCCCGGCCAGTTGTGCCTGCCCGGCCAGTTGTGCCTGCCCGGCCAGTTGTGCCAGGCCTGCCAGTCGTGCATGCACAAAGTCCCTGTGTACGACAACTTCCTCCTCATCCAGAGGTTGGTCAGTCTCTTCCACTGAATCGACTCTTATACAAACCCAtcgcaccacaaccaccacctaaACCCATTCCACCAAAACAACCACCACCCAGACCTGAACAAAACCTCCCCCGTCCACCTTGCCTGCCCCTCCGCCCTGTCCAGTACAGCAACACATGTTACACCCCCCAGCCCTCCACCTCCAGGCATGACGCCCCGTTCCGAAGTCAGATACCCAACCCAGAGGTTGGTTTCAGATTTGACAACAACTTCCTAGTTCAACACATCCTGAAATGGACCTTTGATATGTTCAGTAACTACAAGCAGTTTGGTATACCCTCTGAGCTATGTGAGTTACCACTGAAGGAAGTAGGATCCAGCTTCAGCTCTTATGATGAATACTACAAGACCTTTTACCCCCTGCTTCTCACCAACACTTTTGAGGAGCTTGCAGGTGAATGGCTAAAGAACAAGGAATCAGGAAAGGTGGTAACTCAGAATTTAAAAGTTGTCGCACATGAGTACAGCCACAGTGTTTGGAATGTCAGTTTTACAGCGAGCATTACTGCCAGTGATGACTCCCGTCAGATGTTCCCACGGGAGGAGGACCTGGTCATTCTGTGGCTGCCCCAGAATAGAGATGCTTACTCTTGGCATGAGCAGGGCCTCTTGGATCCCCAAGAACAATTTGGATATGTGCAGAGATACAATGTCTGCAACGGAGGCGTGGGCCAGTGCCCAACTCTGAACCTGATGATAAAGACCCTGGGGAATGTGAGGTTGGTGAACAAGCAGACAGTGCGCTGTGATGTGGTGGGCTCCCTGGTCAGCACCTTGAGGGAGTTCAGGGCAATCTGTCTGCTCAATGGCAGCTCTATGCACAAGCCCCTCCTGGCCCCACATGTCTCCTACTTCCAACCTGGCCCGGAGGTCATCCCCAGCCTCAACCTGCCTGATTACAACCTAGACCAGGTGAGGGCGGTGAAAACCGGTTTGTCCGTCATCAGGAACCAGCAACTCGCCCCAAAAATCTGCCTGATACACGGACCCCCAGGAACGGGAAAGAGCAAAACCATCGTGGGTATGCTGCAAAAGCTGTTCTCTGAGGGAGTACGAAGCATGACTCCTCCAGTAAACAGGCATTCTGAACCCCGCCGCATGAGGGTCCTCCTGTGTGCCCCGTCCAACGCCGCCATCGACAACCTGATGAAGAAGATTATCCCGGTCTTCAAGGAGAAGTGCAGGAACATCCAGGGTAACTGTGGGGACATCAATCTGGTGAGGCTGGGGAACGAAAGGACAATCTCcaagaatttaaaaccttttagCCTGGACAGTCAGGTGAAAAACAAAACACAAAGGGCCCAGATGTCACAGGACTCAGACATCCACCGGCGCAGAGCGCAGCTGGACGAGAACATAGACAAGATCTCCAAGATATTGCCAAAACTGCAAAAGAAAGAGGAAATGTACCATGAGCTGGCAGCACAGAAGTCCAGAATgctccaagagagagagacactcagcCTCCAACTCAAAAAATCTCGCATTAGGAAGCAGGAAACCCAGGCCCAGGTACTGCAAGATGCCCATGTGGTCTGCTGCACCTTGAGCACCAGCGGCAGCACCGTCCTGGAGTCGGCGTTCCGGCGCCTGGGACACAAGCCCTTTAGCTGCGTCATTGTGGACGAGGCAGGGCAGGCCACCGAGACGGAGACTCTCATCCCTTTGCTCTACCATTGCAACGCCCTCATCCTGGTGGGAGACCCCCATCAACTGCCCCCTACGGTTATCTCCCAGAAAGCGAAGGAGTTGAAGTACGGCCAGTCCCTGATGGCTCGGCTGGTGAAGAACCTGGATCGCTACTGTAAGGAGAACAAGAAGCCCAGCCCTGTGGTCTTCCTTAGCTGCCAGTACCGCATGCACCCCGAAATCTGCGAGTTCCCCTCCAAGCACATCTATTGCAAGGCCCTTAAAACTGACAGTGAGACtgcagagaggagggggaacattGGCTGGCCTCTCCTGCCCTACCGTGTGTTTGACGTGACCGACGGTCAGGAGGTCAAGGAGGGAGCGTCTTTCAGCAACCTGAAAGAGGTGCAGCTGGTAGTGTTCCTGCTGAGGCTGATGGCTGAGAAGCAGCAGGTCAAGGTGGGGGTCATCACGCCGTACAATGCCCAGAAGGACCGCATCAACCGCGAGATGGCCAAGGTGGTCAACAAGAACCTCACGGTGGACGTTGACACTGTGGAAGGCTTCCAGGGCCGAGAGATGGACTGTGTCATTGTCTCCTGCGTCAGGGCGAGCCACGAGCAGGGCGGCATTGGATTCCTGGGGAATCGCCAGAGGTTGAATGTGACCATCACCCGGGCCAAGTTTAGCCTGTTCATTCTGGGCCATCTACGGACACTCCAGGAAAACCAAGACTGGGGTGCGCTCATCAAGGATGCCGCGACACGAGACGTCATTATATCAACGAATGAGATGACCTTCAAGACGGACGCCAGGAAGATCTTCAAAAAGGAGCTGACCAGGAGCTCGTCTTACCCCCTCAGAGAACCAGGCCCTCCCTCTGCTGCCCCCTGTCCCACCGCCGATCCCCCCAGGCCTGCTCCCTTCCAGCTACGCCGCTCTTCTGAGCCAGCCCTGTTCGCCCAGGGCAGGGACTCCCCCCAGCAGCCCTGGTCGGCATCCCCTCCCCAGGACGCTGATAGGCCCAGAGACCCTCGTCTGGTAGTCCAGACACCCCAGCATAGACCAGACTGGAATCCGCGAGCTGAAAGAATCAGGCTCCCACAAGCCGAGATCAGAAGAGACCCACGAGCTGAGAGGGATCCACGAGGATGCAACAGCCCAGAACAGCGTCACCCAACTGGGTACCAAAACCAGAGATGGGCtgtcagggagagggacagagagcaacACCGTTCACCAATCACCGCGCCATACCCAGGAGATGGAGTCAACAGACCACCGAGGGACCCCAGTCAGAGGGACTATAATCGCTACAGTGCTACAGCCTtcaaccaccacacacacactcacccccggAAACGAGACCCAGACCCCCGATGGATCCCTCCCACCCACtccaagagggggagagagaggactgaccACTGACtctgttttggtttgtttttttATTGGTGTGCTTTCTGATAAATTCAGGGAATGGGAACGAGAGTGGAAGGGCAAGAGATTACGCAGAGTAGTTTGTTCGACAACCAGTCAGTCAAAAACCTCACTGTTCACCATCTCAAGCAGTAATATGATGCTGTTGTATCATTTACAAGTCAGTTAATTGTATTTCTGTAAtaaatgtaattgtttttgtaATAAGCTGTTTAATGACTGTTATGGCTGGAGTATGTGGGTTGGCCACTGGCCTCTCTGTAAAAAACTGCCCTTTGTTTGGACAGTGGGGGCGGGGCCTTTTGAAAGGGCACTTGTACTATAACACTGGTACTTGTGTGTTTCCAGTTTATTACTGAGAGATGTAACCAGGGTAATGCACTGTGCCTGTGACTTTTATTCATTTTCTTTGTTTGGTTCACAATTTTATAATTTCCTAATCTCATTTTCTTACGTGCTCTGCATTTGTATAGAAATGTTCTGGACTTCATAAAAGCGCAAAGACTAATGTCGCTGGTACTCAACGTTTGATACCTGGTTATTTATTAGTAGTATAGCCCACTTAACAGAATGGCTGTTGCATTACAATTTTAAGTACACACTATTTCCGCTTATAGCATATATTAAGTGCAAAAGTATATCTCGTCCACCATAGTTATTTGACTATAGGCAAttattttagtttttattttgCTTTTAAAGTGTCGTCCTTATTTAGCACCAGGATGCTGATTAACTGAGGCAATTAAGGTTACATTTTGTGATTGGAATGGGCCTGGTTGTTACATGTAAGTATCTTTATAGAATTTGTAACATGGACCCATACGTAGTCTAAGTGAATGCTGTAGCTGGAGAATGTGGGACAGATTTTGTATTTCTAAATAGGGAGACATGTACAGTTAAATGTCATTTTATGCCCCGGAGAAGCTTTGACATCTCTGGTCACTTTCTTCTGCTGGTTTGTCTGTACGGTATTGGATGCACTTTTATTTGTTGTATCACACTGTGCATTTACACAAGctcattttcacacacacacacacacacactcacacacacctctaccaACAAAACTCATTTTAGGTTCCCTTTCTTGTCGACAGAGACAAGGTTATGTATTATTCACCGCTGTTGGACTTCAGGCCAGCTACCTCCTCAAATGTTGGAACCAAAGACTTCCTGTGACTCTCAGCAACTGCAGTGAAGTATACATGGCTTTATTCCTTCTGCGTGTCACCTGTCACGATACTGTACAGTGTTTAGAAGGTAATGGTTACAATAATTTCTCCATTTCAATGCAATATAGTTTCTGGGAGAAATCGTTTTTCTAAGACCTGTGCCCCAAAAGAACCACAGTGCCAGTTTAAACCAAATCAAGTATGTAGATATTTTTTAAGTTGATAAATGAATCATCTTATTTGAAATTGAACAATTGTTTACATTGAATTTTAATCTgcaaaattattttatttatttgcaatTGGTGCTTGTTCACCTGGGGCATGTTCAACCGGACTCATTGTTTTGGAACGTTCAGAAAGAAACATactatgtagaacaaacatgcatCTCTGACATGCAGAATAAGGAGTCGCGTCGGCTCTACTTGTGGAATCTCTATCTGCATCTTTCGAGAACGTTTTCGTACTGAATATGGCCTTGTATATTATTGTTCACCAAACCAATCAGCTGATTCCGTCTTAAAGTGTTAGGGAAAGTAAATTGACCATGGTCAACATTGTATGCTTTGTTTTTCTGAACCACTGCTAAAATAGTGGGCAAATAAAAATGTGCATTTTGTTATAGACATCTTTCACTTTACACGGGTAGATGGTACACTAGCATTATTAGTTGGgccttgtttgtgtgtctcacacacacaactcatcaTACCACAATCCTTTCACCAGTTCTGATCGGCATAGGTACAACTTTCCTCTAAGGCCATAGTTTCCATTCTCCTAATGCTTGAGTGTAGGACTGTGTGGTAGGGGaatctggtcctagatcagtgCGGTTCAGCCAGGACAACTCCCACGCTGGTCTCTGATCTGTGCCCCATCTCCCAGAGGATCTCCCCCACACGTGTCAGTTCATCCCACTGCCCTTCATGTTAACAATACAGACTTCTTCTGAAGCGGAGCCCAGAATAGAGATGCCTTACAGACAGACTAGAACAGGATTTTATTTTACCACCGCCTGAATGTCTTTTGTCTTATTGCATGCTGacacccactcacccacccacttattttttttgttgtttgcaTTCCTCCCAGGTGTTCGTGGTGcttttgtctaaatgtgttcatcCTGTTACGGCGTGAGTGCATTTCACCTGTAGTTCTTGTTTACATCCAATGTCACTGACTCCACTAACACGGGGAACTACTTTCTCAATGaagtgtttattttttaataaaatTCTACTCCAAATAAAGGATGCCACACAGTA

Function

NR:

description
probable helicase senataxin

GO: NA

KEGG:

id description
K10706 SETX, ALS4; senataxin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601888.2 True 10022 mRNA 0.49 25 15610346 15679579

Neighbor

gene id symbol gene type direction distance location
rapgef1b LOC106569917 coding downstream 385014 15149438 ~ 15225332 (-)
LOC110523287 LOC106569911 coding downstream 472319 15135601 ~ 15138027 (-)
LOC118964537 LOC106569911 coding downstream 474867 15134692 ~ 15135479 (-)
LOC118964536 LOC106596987 coding downstream 475841 15133867 ~ 15134505 (-)
LOC118936652 LOC106569911 coding downstream 476887 15081830 ~ 15136742 (-)
LOC110523302 NA coding upstream 14026 15693396 ~ 15707607 (-)
dolpp1 dolpp1 coding upstream 44210 15723789 ~ 15734869 (-)
miga2 miga2 coding upstream 60494 15740073 ~ 15752753 (-)
spout1 spout1 coding upstream 91326 15770905 ~ 15775789 (-)
kyat1 LOC106569847 coding upstream 96330 15775909 ~ 15786131 (-)
G371956 NA non-coding downstream 2713 15598237 ~ 15607633 (-)
G371954 NA non-coding downstream 3179 15603974 ~ 15607167 (-)
G371994 NA non-coding downstream 15062 15593717 ~ 15595284 (-)
G371988 LOC106562870 non-coding downstream 22237 15581704 ~ 15588109 (-)
G371986 NA non-coding downstream 28941 15578091 ~ 15581405 (-)
G372015 NA non-coding upstream 6319 15685898 ~ 15686111 (-)
G372054 NA non-coding upstream 137261 15816840 ~ 15817633 (-)
G372056 NA non-coding upstream 139405 15818984 ~ 15819222 (-)
G372058 NA non-coding upstream 142106 15821685 ~ 15821906 (-)
G371294 LOC106569911 other downstream 485557 15123475 ~ 15124789 (-)
LOC110524957 LOC106569957 other downstream 615187 14988147 ~ 14995197 (-)
G370635 NA other downstream 1181755 14427338 ~ 14428591 (-)
G370333 NA other downstream 1401641 14207190 ~ 14208705 (-)
G368921 NA other downstream 2904254 12705566 ~ 12706092 (-)
G372122 NA other upstream 296027 15975606 ~ 15976116 (-)
G372123 NA other upstream 298923 15978502 ~ 15981215 (-)
LOC110523341 LOC106569324 other upstream 1254656 16909582 ~ 16942359 (-)
G373228 LOC106569424 other upstream 1444458 17124037 ~ 17125807 (-)

Expression


Co-expression Network