LOC110523302


Basic Information

Item Value
gene id LOC110523302
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15693396 ~ 15707607 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473430.2
CCTGGCGGCTATGTTGAAAGACTACTGCATGAATTATTCTGACAACAGCCGAGGGGCTACCCCAAACTGAATGATAAAAGTTACTAGAACTAGTTGATTCATCACAACGGTCATTTTCTGTGGAGTATATGGCTGCTCAAACGAGGCCGGAAACACAAAGGGGGGAAAAGATGTTTACAGATTCCCCGCAATCATGAAACACCATTGGCAATACCAATGAGATAAGACTCAAGAACTCAGAGAAGCGAAGAAACCTTTTTGCCCGTCAAGACCTCAACACAGACAGCTGTCATTACAGGGTTTGCTACGATCATTTCATCATTGcagaccaggacaaggagagtaggaagaagAGAATACTTCAAAATGAGAAGATCCTGCCATGGAAAAGAAGACTGGGTGGACATAAAGTGGAAAGGAGGGGAAATAACTCACAACATGCAGCAGGACACCTTCAGCTGTGGGGTCTTTGTAATGCAGATGGCCATCCCCTTCCAAATTGATATGGAACCTTCAAAAACACATGGCAACTGCGGAAAGAAATGGCTGAGGATAGACAAAAAATGTCTGAGTTCAACAAAGCCAACAACTGCTTCATGTGTGCCACTGATAAAGAACCTGGATGTGGCCCAAAGACTGACTGGTAGGTTCCCCAGCTGACCTAtatcaagacacccatgttgaCTGGATTCCCCCTGTGAAGAGGAGTCATGCTGCAGCAGCATCCGATTCTACTACTTGTTCATCTTTTTCCAGACATGAAAGAAGACTCCCCTCAGTTATATGACATGGTTGTCATATGCTGTGCTTTGGACAATTTGAATGATTGAGTAGAGCACCTTGTCATGACAAAAGTGCCCCCTTAAACTGTATGAATATAATGTATTTGGAACGTTTAAAAGACTTGTTGATATTGTAAACATACTGTACTTTAAGCCATATTGTTGTCCAAGGGTAAAGACAAGTATTTTGTCATCTTTGCTTTGCCTAGCCACATTGAATAAAAAGTATTTCTTATGGCCCAACTATTGCCATGTTCCTTGCTTTTCAGAAATGTGGTTCTCAAACAAGATGCACCCCATGGCTATCCAACTCGATGGATTCTTCATTCACCGGGCAGACAGGTGATATTAATTTGGCGTCACTAAATCAAAAAGATATATAattcacatgcgccaaatacaacaggtatagatagaccttacagtgaaatgcttacttacaagcccttaaccaacaatgcagttaagaaaaataagtgttaaagtatttactgaaataaactgaagaaaataattaattaaaaaaTGAAGGTGCAACAATAAAATGacgttagtcgaggtaatttgtacatgtaggtaaagtgactatgtttgtataataaacagagtagcagaaaaagtttggcatgggctctcaaatcctgaaaaggttctacaactgtaCCTTTGAGAGCTTAtagactggctgcatcactgcttggtatagcTATAGCATCGCCCTCGAtcacatggcgctacagagggttgtgcgggcagcccagtacatcactgaggccgagctccctgccatcctggACCTCCATATCAGGTGAAAGACCCCAACCACCCATGCCATAGATTTTCTTTGCTGCAGCACAGCAAGagcttgaacagcttctatccccaagcaatacgACTGATAATTAGCTAACAAAATTGCTACACGGACCAAGTTTACCTTGCATCTTTATTGACcttttatttcagtgttttacaccgtctatgcacactcacagggccctgtCACTGTCACTCCAAAACAAACACTCCATtttctcactcacacataatatgctgctgttactctgtttatcttatatcctgttgcctaaTCACCTTACCCCtaaacatatctacctccatcactccagtatccctgtcaccttacccc
>XR_002473427.2
AGAACGCCTCCTGGCGGCTATGTTGAAAGACTACTGCATGAATTATTCTGACAACAGCCGAGGGGCTACCCCAAACTGAATGATAAAAGTTACTAGAACTAGTTGATTCATCACAACGGTCATTTTCTGTGGAGTATATGGCTGCTCAAACGAGGCCGGAAACACAAAGGGGGGAAAAGATGTTTACAGATTCCCCGCAATCATGAAACACCATTGGCAATACCAATGAGATAAGACTCAAGAACTCAGAGAAGCGAAGAAACCTTTTTGCCCGTCAAGACCTCAACACAGACAGCTGTCATTACAGGGTTTGCTACGATCATTTCATCATTGaagcagaccaggacaaggagagtaggaagaagAGAATACTTCAAAATGAGAAGATCCTGCCATGGAAAAGAAGACTGGGTGGACATAAAGTGGAAAGGAGGGGAAATAACTCACAACATGCAGCAGGACACCTTCAGCTGTGGGGTCTTTGTAATGCAGATGGCCATCCCCTTCCAAATTGATATGGAACCTTCAAAAACACATGGCAACTGCGGAAAGAAATGGCTGAGGATAGACAAAAAATGTCTGAGTTCAACAAAGCCAACAACTGCTTCATGTGTGCCACTGATAAAGAACCTGGATGTGGCCCAAAGACTGACTGGTAGGTTCCCCAGCTGACCTAtatcaagacacccatgttgaCTGGATTCCCCCTGTGAAGAGGAGTCATGCTGCAGCAGCATCCGATTCTACTACTTGTTCATCTTTTTCCAGACATGAAAGAAGACTCCCCTCAGTTATATGACATGGTTGTCATATGCTGTGCTTTGGACAATTTGAATGATTGAGTAGAGCACCTTGTCATGACAAAAGTGCCCCCTTAAACTGTATGAATATAATGTATTTGGAACGTTTAAAAGACTTGTTGATATTGTAAACATACTGTACTTTAAGCCATATTGTTGTCCAAGGGTAAAGACAAGTATTTTGTCATCTTTGCTTTGCCTAGCCACATTGAATAAAAAGTATTTCTTATGGCCCAACTATTGCCATGTTCCTTGCTTTTCAGAAATGTGGTTCTCAAACAAGATGCACCCCATGGCTATCCAACTCGATGGATTCTTCATTCACCGGGCAGACAGGTGATATTAATTTGGCGTCACTAAATCAAAAAGATATATAattcacatgcgccaaatacaacaggtatagatagaccttacagtgaaatgcttacttacaagcccttaaccaacaatgcagttaagaaaaataagtgttaaagtatttactgaaataaactgaagaaaataattaattaaaaaaTGAAGGTGCAACAATAAAATGacgttagtcgaggtaatttgtacatgtaggtaaagtgactatgtttgtataataaacagagtagcagaaaaagtttggcatgggctctcaaatcctgaaaaggttctacaactgtaCCTTTGAGAGCTTAtagactggctgcatcactgcttggtatagcTATAGCATCGCCCTCGAtcacatggcgctacagagggttgtgcgggcagcccagtacatcactgaggccgagctccctgccatcctggACCTCCATATCAGGTGAAAGACCCCAACCACCCATGCCATAGATTTTCTTTGCTGCAGCACAGCAAGagcttgaacagcttctatccccaagcaatacgACTGATAATTAGCTAACAAAATTGCTACACGGACCAAGTTTACCTTGCATCTTTATTGACcttttatttcagtgttttacaccgtctatgcacactcacagggccctgtCACTGTCACTCCAAAACAAACACTCCATtttctcactcacacataatatgctgctgttactctgtttatcttatatcctgttgcctaaTCACCTTACCCCtaaacatatctacctccatcactccagtatccctgtcaccttacccc
>TU422754
AGACCCCAACCACCCATGCCATAGATTTTCTTTGCTGCAGCACAGCAAGagcttgaacagcttctatccccaagcaatacgACTGATAATTAGCTAACAAAATTGCTACACGGACCAAGTTTACCTTGCATCTTTATTGACcttttatttcagtgttttacaccgtctatgcacactcacagggccctgtCACTGTCACTCCAAAACAAACACTCCATtttctcactcacacataatatgctgctgttactctgtttatcttatatcctgttgcctaaTCACCTTACCCCtaaacatatctacctccatcaccccagtatccctgtcaccttacccctaaacatatctacctccatca
>TU422751
TGATAAAAGTTACTAGAACTAGTTGATTCATCACAACGGTCATTTTCTGTGGAGTATATGGCTGCTCAAACGAGGCCGGAAACACAAAGGGGGGAAAAGATGTTTACAGATTCCCCGCAATCATGAAACACCATTGGCAATACCAATGAGATAAGACTCAAGAACTCAGAGAAGCGAAGAAACCTTTTTGCCCGTCAAGACCTCAACACAGACAGCTGTCATTACAGGGTTTGCTACGATCATTTCATCATTGGTTCCCCAGCTGACCTAtatcaagacacccatgttgaCTGGATTCCCCCTGTGAAGAGGAGTCATGCTGCAGCAGCATCCGATTCTACTACTTGTTCATCTTTTTCCAGACATGAAAGAAGACTCCCCTCAGTTATATGACATGGTTGTCATATGCTGTGCTTTGGACAATTTGAATGATTGAGTAGAGCACCTTGTCATGACAAAAGTGCCCCCTTAAACTGTATGAATATAATGTATTTGGAACGTTTAAAAGACTTGTTGATATTGTAAACATACTGTACTTTAAGCCATATTGTTGTCCAAGGGTAAAGACAAGTATTTTGTCATCTTTGCTTTGCCTAGCCACATTGAATAAAAAGTATTTCTTATGGCCC
>TU422760
ttcgcccggcaaccagacagggtgcgttccaggacaccggaaacacactccaggacagaaacacaggcaaacacagactcGGGAAGCGAGATTCGTgacacactgctttgctttatcttggcaaggtcgcagttgtaaatgagaacttgttctcaactggcttacctcgttgaataaagAGAATACTTCAAAATGAGAAGATCCTGCCATGGAAAAGAAGACTGGGTGGACATAAAGTGGAAAGGAGGGGAAATAACTCACAACATGCAGCAGGACACCTTCAGCTGTGGGGTCTTTGTAATGCAGATGGCCATCCCCTTCCAAATTGATATGGAACCTTCAAAAACACATGGCAACTGCGGAAAGAAATGGCTGAGGATAGACAAAAAATGTCTGAGTTCAACAAAGCCAACAACTGCTTCATGTGTGCCACTGATAAAGAACCTGGATGTGGCCCAAAGACTGACTGGGAATGAAGACAAACGAGTTCAACAGAGTAAAGAACACAAACTGGAAGTGCTGTCTTTGTTGTTAAAAATGTATGCTATaccccatccacactgaagaggctctgaaatgtacatcaaccagggataaagagaaagTTAACACTATGAAATGTTTCATACTTAACTTCAATTAAGTGTCTGACATGTTGGAAAAGATGAAAGGCCTACAATTTATGTTTAATTTGtcaatattacatttttattcattGATTTACTGGCCACCATTAGTGTGGTTacatgttcagtatatgtattgaccagcaaacccactgcagcctacctcaccagctcactctccatccctgctttggACAAGTAATAGCATGACTCTCGTACTATGCCCTTTTCCTTTATGGTTAATATTAACGACGAAAGGAGATATTATCTGTCTCTCCTATTGTGTACCGCTGTTAAATACTGTggacaaataaaaaaacaggggAAATAGGTACTTAGAACTACCAGTTATTGTAGATACATATTAAAGAAAAGGGtaaacacaacactggactgaacCCCCTAATTGTCAAACTAATATTAATGTACAACAATATAGAAGATACATGACTAGAAATTAGCAACATGGGTGTACATCCACTGCATGCTTCTTAGGGGTGTAattgacatgaccaaggagctattgcaaATTTGAAACTATGAAAAATGTACGTTACACTGCGTGAttttacagtacacaaacaaGAGAGTGCAATATAGAAGGGCAGTCATTGGAcgttaggtcacatgaccaagtaGCTATTGAAattttacattttgaaaaatgCATGTAAAACCATGTGAGATAAATGGc

Function

NR:

description
uncharacterized protein LOC110503783

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473430.2 False 1932 mRNA 0.42 6 15693605 15707598
XR_002473427.2 False 1944 mRNA 0.42 6 15693605 15707607
TU422754 False 358 lncRNA 0.43 2 15693396 15693941
TU422751 False 629 lncRNA 0.41 2 15694514 15707527
TU422760 True 1320 TUCP 0.40 5 15696092 15698329

Neighbor

gene id symbol gene type direction distance location
setx LOC106569805 coding downstream 14026 15610346 ~ 15679579 (-)
rapgef1b LOC106569917 coding downstream 468273 15149438 ~ 15225332 (-)
LOC110523287 LOC106569911 coding downstream 555578 15135601 ~ 15138027 (-)
LOC118964537 LOC106569911 coding downstream 558126 15134692 ~ 15135479 (-)
LOC118964536 LOC106596987 coding downstream 559100 15133867 ~ 15134505 (-)
dolpp1 dolpp1 coding upstream 16182 15723789 ~ 15734869 (-)
miga2 miga2 coding upstream 32466 15740073 ~ 15752753 (-)
spout1 spout1 coding upstream 63298 15770905 ~ 15775789 (-)
kyat1 LOC106569847 coding upstream 68302 15775909 ~ 15786131 (-)
surf6 surf6 coding upstream 78861 15786468 ~ 15788812 (-)
G372015 NA non-coding downstream 7494 15685898 ~ 15686111 (-)
G371956 NA non-coding downstream 85972 15598237 ~ 15607633 (-)
G371954 NA non-coding downstream 86438 15603974 ~ 15607167 (-)
G371994 NA non-coding downstream 98321 15593717 ~ 15595284 (-)
G371988 LOC106562870 non-coding downstream 105496 15581704 ~ 15588109 (-)
G372054 NA non-coding upstream 109233 15816840 ~ 15817633 (-)
G372056 NA non-coding upstream 111377 15818984 ~ 15819222 (-)
G372058 NA non-coding upstream 114078 15821685 ~ 15821906 (-)
G372059 NA non-coding upstream 114851 15822458 ~ 15822944 (-)
G372060 NA non-coding upstream 115694 15823301 ~ 15823630 (-)
G371294 LOC106569911 other downstream 568816 15123475 ~ 15124789 (-)
LOC110524957 LOC106569957 other downstream 698446 14988147 ~ 14995197 (-)
G370635 NA other downstream 1265014 14427338 ~ 14428591 (-)
G370333 NA other downstream 1484900 14207190 ~ 14208705 (-)
G368921 NA other downstream 2987513 12705566 ~ 12706092 (-)
G372122 NA other upstream 267999 15975606 ~ 15976116 (-)
G372123 NA other upstream 270895 15978502 ~ 15981215 (-)
LOC110523341 LOC106569324 other upstream 1226628 16909582 ~ 16942359 (-)
G373228 LOC106569424 other upstream 1416430 17124037 ~ 17125807 (-)
LOC110523354 LOC106569496 other upstream 1781419 17483696 ~ 17521507 (-)

Expression


Co-expression Network