st6galnac4 (st6galnac4)


Basic Information

Item Value
gene id st6galnac4
gene name st6galnac4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15750191 ~ 15756190 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976915.1
GCCGCGTCTCTTCATGTGGTGGGCGGTGAGAGCCAGGGCTACGCTCCCCAGAGCTGTGGCGAACAGCACCTTCTTCAGACTGGGAGAAAGCTTCAGCTGAGAGAATATGGACTGACGGGGAAAGAGATGGGGTGAGATACCCAACTTATTTCCCACCAATTGTGATGAAATCCATTAGGGGAGGGGCCAGAGGTCTCTAATGGATATGAAGTCTCAGAGGTTCCACTGGATTTGTCTGGTTATTGTAACACTGTCAGTGTTGTTATGGTACGTCCACATGACCAGATCAGATGGGTCCAACAGCATGGTCAACATTGGTCTCCAAGGATACCTCAGGATCACCCCTGGCAGGAGGGATCAGTTTCTGAAGATGCACTGCCGCCAGTGTGCCTTGGTGTCCAGCTCGGGACAGATGCAGGGGGCAAGTCTCAGAGAGGAGATTGACCAAATGGGGTGTGTGATCCGCATGAACAACGCCCCCACGCTGGGCTATGAGAGGGACGTAGGGAGCAGAACCAGTCTGAGGGTGGTATCGCACACCAGTGTTCCCCTGCTGATTAAAAACGAGAGCTATTACTTCAGGCACTCTGCGGACACCACCTACGTGTTCTGGGGTCCTGAGCGGAACATGAGGCAGGATGGGAAAGGGCGTGTTTTTAATGCCTTGATGAAGATGGCCACGAAGTACCCGCAGGTCAAAATATACATGGTGACTCGGGAGAAGATCCAGTACTGTGACAGTGTTTTTCAGAACGAGACAGGGAAAAACAGAATGAATTCAGGTGCTTTTCTCAGCACTGGTTTCTTCACCATGATCCTGGCCATGGACATATGTGACAGTATTCACGTCTATGGGATGATCGACGATAACTTCTGCAGCCGTGCCGATCACAGTGTTGCTCCTTACCACTACTACGAGGGAAGCCGGATGGACGAATGCCGCATGTACCGGATGCACGAGCACGCAAGTCGTGGCGGCCATCGCTTCATCACCGAGAAGGCCATCTATGCCCGATGGGCCTTGCACCACAGGGTGGAGTTCAAACACCCTTCCTGGAACCTGCAGGAGAGGAAACATGACCCCTGAGTGTTGTGCCTGGTGACTTTTTAAAATCTTTGTTGACCTCCGTTGGGGAATTCTGTGCAGTATGAGAGTCAAATGATCTTACTCCTTCATGGGGCTGCAGTATTAATTCTAATATTTATGACAGTCTAAATggtgttcaaaacattgcattcaATAGTCAAGCATCAAACTGCCAACTTTTTTACATTGGTCAAAGTGCTCATATTTTTCATTTTAGACCTTTAGCCTATGTCTAAAGTACAGTATTCTGACCACTAACCACTATTAAATTAAAACTGCTATTGGTAGGTCTAGTGATGCCAAATCAAATAAGATTTTTAGTGTTTGAACAAACTTGATGCCTTCGTTGTTTGTTTGTCATAATTATGTCTTTTCATTTCTGCACTCTTAAAATCCAATGTTTTGTCATTTAATGTAGCTTTTATGATGCACTGACTGAATGTTCACCAACGTATTATGTTTTTTCCTGTTCACTGCTATATGCCCATGTATTTCAATGTAATGAAACATTGTTGGGCTTTCCTATCAGAGTTTAGTCTTAACAACATTTCAATCTTTTACATATATTTATTATGTTATGGTTCAAATGTAACAAGAATCATGAATTTAGTGTCACTGAAATATAATAATGTGCTGGTCATTTACTATCAGAGAAAGTGACTATCTGATAGCAAAGAGAGACTATTTTGCTGATTTGATTGGTTTTTGCAGAGGCCAATGGAACGATTTGACATGTTATGAGTAGAGATTCATCCCCAAAAAGTGTGCCTTTTTCTTTAACTTCCTATTTTTGTCTGACATTATACACTTGTTGACTTTAAACAAAAAATGTTGTTGCTTGACAATGTAAATGGTTTAATGTTACTTTTATATAAGGTCTGATATGCCTTATATTCTGATGGTCTTAATGATATTTACAAAGCTTGACAATCCTACAATCATGTTCAACGGAAAATCCCTATAGTGCTCTCTTTTAGGAAATATGACATGCTCTTTACCTGCCTTTTTAAATTACTTAATGATGTTGTCTGATTCCAAAGAAATGTTTTATAAATGTTTACAGTATTGTGGT
>XM_021601899.2
TTCGTTACATCTTTCATTCCCTGAAATATCTTTCCAGTAATAGAATGTGTCCAATATCAGGAACTAAGCTATCCAGGTTCTGTTCACTGTCGGAACATAAATGGGTAACACCATCACTCACAACAAGGAAAACTAGGTGAGATACCCAACTTATTTCCCACCAATTGTGATGAAATCCATTAGGGGAGGGGCCAGAGGTCTCTAATGGATATGAAGTCTCAGAGGTTCCACTGGATTTGTCTGGTTATTGTAACACTGTCAGTGTTGTTATGGTACGTCCACATGACCAGATCAGATGGGTCCAACAGCATGGTCAACATTGGTCTCCAAGGATACCTCAGGATCACCCCTGGCAGGAGGGATCAGTTTCTGAAGATGCACTGCCGCCAGTGTGCCTTGGTGTCCAGCTCGGGACAGATGCAGGGGGCAAGTCTCAGAGAGGAGATTGACCAAATGGGGTGTGTGATCCGCATGAACAACGCCCCCACGCTGGGCTATGAGAGGGACGTAGGGAGCAGAACCAGTCTGAGGGTGGTATCGCACACCAGTGTTCCCCTGCTGATTAAAAACGAGAGCTATTACTTCAGGCACTCTGCGGACACCACCTACGTGTTCTGGGGTCCTGAGCGGAACATGAGGCAGGATGGGAAAGGGCGTGTTTTTAATGCCTTGATGAAGATGGCCACGAAGTACCCGCAGGTCAAAATATACATGGTGACTCGGGAGAAGATCCAGTACTGTGACAGTGTTTTTCAGAACGAGACAGGGAAAAACAGAATGAATTCAGGTGCTTTTCTCAGCACTGGTTTCTTCACCATGATCCTGGCCATGGACATATGTGACAGTATTCACGTCTATGGGATGATCGACGATAACTTCTGCAGCCGTGCCGATCACAGTGTTGCTCCTTACCACTACTACGAGGGAAGCCGGATGGACGAATGCCGCATGTACCGGATGCACGAGCACGCAAGTCGTGGCGGCCATCGCTTCATCACCGAGAAGGCCATCTATGCCCGATGGGCCTTGCACCACAGGGTGGAGTTCAAACACCCTTCCTGGAACCTGCAGGAGAGGAAACATGACCCCTGAGTGTTGTGCCTGGTGACTTTTTAAAATCTTTGTTGACCTCCGTTGGGGAATTCTGTGCAGTATGAGAGTCAAATGATCTTACTCCTTCATGGGGCTGCAGTATTAATTCTAATATTTATGACAGTCTAAATggtgttcaaaacattgcattcaATAGTCAAGCATCAAACTGCCAACTTTTTTACATTGGTCAAAGTGCTCATATTTTTCATTTTAGACCTTTAGCCTATGTCTAAAGTACAGTATTCTGACCACTAACCACTATTAAATTAAAACTGCTATTGGTAGGTCTAGTGATGCCAAATCAAATAAGATTTTTAGTGTTTGAACAAACTTGATGCCTTCGTTGTTTGTTTGTCATAATTATGTCTTTTCATTTCTGCACTCTTAAAATCCAATGTTTTGTCATTTAATGTAGCTTTTATGATGCACTGACTGAATGTTCACCAACGTATTATGTTTTTTCCTGTTCACTGCTATATGCCCATGTATTTCAATGTAATGAAACATTGTTGGGCTTTCCTATCAGAGTTTAGTCTTAACAACATTTCAATCTTTTACATATATTTATTATGTTATGGTTCAAATGTAACAAGAATCATGAATTTAGTGTCACTGAAATATAATAATGTGCTGGTCATTTACTATCAGAGAAAGTGACTATCTGATAGCAAAGAGAGACTATTTTGCTGATTTGATTGGTTTTTGCAGAGGCCAATGGAACGATTTGACATGTTATGAGTAGAGATTCATCCCCAAAAAGTGTGCCTTTTTCTTTAACTTCCTATTTTTGTCTGACATTATACACTTGTTGACTTTAAACAAAAAATGTTGTTGCTTGACAATGTAAATGGTTTAATGTTACTTTTATATAAGGTCTGATATGCCTTATATTCTGATGGTCTTAATGATATTTACAAAGCTTGACAATCCTACAATCATGTTCAACGGAAAATCCCTATAGTGCTCTCTTTTAGGAAATATGACATGCTCTTTACCTGCCTTTTTAAATTACTTAATGATGTTGTCTGATTCCAAAGAAATGTTTTATAAATGTTTACAGTATTGTGGTGTTTATCTAGTTTATTCTGAAGGTGTCTGGTTTTCACAACACTGAAATTAACTATGTCCATTTTCAAA
>XM_036976916.1
ACACCATCACTCACAACAAGGAAAACTAGGTGAGATACCCAACTTATTTCCCACCAATTGTGATGAAATCCATTAGGGGAGGGGCCAGAGGTCTCTAATGGATATGAAGTCTCAGATCAGATGGGTCCAACAGCATGGTCAACATTGGTCTCCAAGGATACCTCAGGATCACCCCTGGCAGGAGGGATCAGTTTCTGAAGATGCACTGCCGCCAGTGTGCCTTGGTGTCCAGCTCGGGACAGATGCAGGGGGCAAGTCTCAGAGAGGAGATTGACCAAATGGGGTGTGTGATCCGCATGAACAACGCCCCCACGCTGGGCTATGAGAGGGACGTAGGGAGCAGAACCAGTCTGAGGGTGGTATCGCACACCAGTGTTCCCCTGCTGATTAAAAACGAGAGCTATTACTTCAGGCACTCTGCGGACACCACCTACGTGTTCTGGGGTCCTGAGCGGAACATGAGGCAGGATGGGAAAGGGCGTGTTTTTAATGCCTTGATGAAGATGGCCACGAAGTACCCGCAGGTCAAAATATACATGGTGACTCGGGAGAAGATCCAGTACTGTGACAGTGTTTTTCAGAACGAGACAGGGAAAAACAGAATGAATTCAGGTGCTTTTCTCAGCACTGGTTTCTTCACCATGATCCTGGCCATGGACATATGTGACAGTATTCACGTCTATGGGATGATCGACGATAACTTCTGCAGCCGTGCCGATCACAGTGTTGCTCCTTACCACTACTACGAGGGAAGCCGGATGGACGAATGCCGCATGTACCGGATGCACGAGCACGCAAGTCGTGGCGGCCATCGCTTCATCACCGAGAAGGCCATCTATGCCCGATGGGCCTTGCACCACAGGGTGGAGTTCAAACACCCTTCCTGGAACCTGCAGGAGAGGAAACATGACCCCTGAGTGTTGTGCCTGGTGACTTTTTAAAATCTTTGTTGACCTCCGTTGGGGAATTCTGTGCAGTATGAGAGTCAAATGATCTTACTCCTTCATGGGGCTGCAGTATTAATTCTAATATTTATGACAGTCTAAATggtgttcaaaacattgcattcaATAGTCAAGCATCAAACTGCCAACTTTTTTACATTGGTCAAAGTGCTCATATTTTTCATTTTAGACCTTTAGCCTATGTCTAAAGTACAGTATTCTGACCACTAACCACTATTAAATTAAAACTGCTATTGGTAGGTCTAGTGATGCCAAATCAAATAAGATTTTTAGTGTTTGAACAAACTTGATGCCTTCGTTGTTTGTTTGTCATAATTATGTCTTTTCATTTCTGCACTCTTAAAATCCAATGTTTTGTCATTTAATGTAGCTTTTATGATGCACTGACTGAATGTTCACCAACGTATTATGTTTTTTCCTGTTCACTGCTATATGCCCATGTATTTCAATGTAATGAAACATTGTTGGGCTTTCCTATCAGAGTTTAGTCTTAACAACATTTCAATCTTTTACATATATTTATTATGTTATGGTTCAAATGTAACAAGAATCATGAATTTAGTGTCACTGAAATATAATAATGTGCTGGTCATTTACTATCAGAGAAAGTGACTATCTGATAGCAAAGAGAGACTATTTTGCTGATTTGATTGGTTTTTGCAGAGGCCAATGGAACGATTTGACATGTTATGAGTAGAGATTCATCCCCAAAAAGTGTGCCTTTTTCTTTAACTTCCTATTTTTGTCTGACATTATACACTTGTTGACTTTAAACAAAAAATGTTGTTGCTTGACAATGTAAATGGTTTAATGTTACTTTTATATAAGGTCTGATATGCCTTATATTCTGATGGTCTTAATGATATTTACAAAGCTTGACAATCCTACAATCATGTTCAACGGAAAATCCCTATAGTGCTCTCTTTTAGGAAATATGACATGCTCTTTACCTGCCTTTTTAAATTACTTAATGATGTTGTCTGATTCCAAAGAAATGTTTTATAAATGTTTACAGTATTGTGGT

Function

symbol description
st6galnac4 Predicted to enable alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity. Predicted to be involved in ganglioside biosynthetic process and oligosaccharide metabolic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region. Orthologous to human ST6GALNAC4 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4).

NR:

description
alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3-like

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008373 sialyltransferase activity molecular_function

KEGG:

id description
K03373 SIAT7C, ST6GalNAc III; N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7C)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976915.1 False 2159 mRNA 0.43 6 15750191 15756122
XM_021601899.2 False 2232 mRNA 0.41 6 15752904 15756190
XM_036976916.1 True 1989 mRNA 0.42 6 15753011 15756122

Neighbor

gene id symbol gene type direction distance location
LOC110523300 LOC105028392 coding upstream 158748 15464555 ~ 15591443 (+)
uck1 LOC106569943 coding upstream 604671 15117198 ~ 15187954 (+)
LOC110519478 LOC106596183 coding upstream 653434 15086878 ~ 15096757 (+)
LOC110518158 LOC106596183 coding upstream 674633 15065627 ~ 15075700 (+)
LOC110519479 LOC106596183 coding upstream 695838 15047739 ~ 15054353 (+)
st6galnac6 sia7f coding downstream 69 15756259 ~ 15772026 (+)
LOC110523312 surf1 coding downstream 32605 15788795 ~ 15791028 (+)
med22 med22 coding downstream 39987 15796177 ~ 15810502 (+)
usp20 LOC106569850 coding downstream 60610 15816800 ~ 15839459 (+)
LOC118964570 NA coding downstream 73343 15829533 ~ 15831741 (+)
G371612 NA non-coding upstream 35596 15714329 ~ 15714595 (+)
G371610 NA non-coding upstream 36990 15712970 ~ 15713201 (+)
G371598 NA non-coding upstream 51500 15690051 ~ 15698691 (+)
G371597 NA non-coding upstream 61744 15688226 ~ 15688447 (+)
G371567 LOC106569805 non-coding upstream 98755 15650978 ~ 15651436 (+)
G371615 LOC100194725 non-coding downstream 35369 15791559 ~ 15795122 (+)
G371632 NA non-coding downstream 59015 15815205 ~ 15815749 (+)
G371639 NA non-coding downstream 95180 15851370 ~ 15851721 (+)
G371653 NA non-coding downstream 113583 15869773 ~ 15870026 (+)
G371656 NA non-coding downstream 131048 15887238 ~ 15916078 (+)
G371182 NA other upstream 621374 15124290 ~ 15128817 (+)
LOC118964542 LOC106569496 other upstream 944720 14798616 ~ 14805526 (+)
G370414 NA other upstream 1382030 14367672 ~ 14368161 (+)
G370382 smarcb1 other upstream 1424296 14321104 ~ 14325895 (+)
G372281 LOC106569177 other downstream 463416 16218328 ~ 16220933 (+)
G372373 NA other downstream 979452 16735642 ~ 16738500 (+)
G372618 LOC105030512 other downstream 1114244 16870434 ~ 16882185 (+)
G373726 NA other downstream 1947923 17704113 ~ 17707757 (+)

Expression


Co-expression Network