st6galnac6 (sia7f)


Basic Information

Item Value
gene id st6galnac6
gene name sia7f
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15756259 ~ 15772026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601897.2
AATTTTGATGACGCAAGCGAGTCCCCTCCTACGATGGTTTAGTGAGATGGGGGACTGATCAAACGTCAATGATGCACAGATCTCATATGGATAAAACAACGAATTGGGGTGGTGACCAGAAAAGCACAGAACATGCAATGTAGCTCAGCCTGACTTGGAAGCATGGGGATGAGGCTTGTTGAAAAGCAAGGGCCTAAGAGCCAGAAGATGGTGATCTTCGGGGCCATCTTCCTCCTGAtgaccctcctcatcctctttagCTCTAACAGCGGCAACGACATCAGTCCCTTCTACAGTCCCTTTCGGGCGTCCTCGCCTCATCACCCCATCAAGGTCACTGACCTCAAGAAATGGGCAGGGAAGGAGGGCTATGTGGCTGTCTATGGAAACAAGAGTCTGACCCTGCACTGCCACCACTGTGCCCTGGTGACCAGCTCCAGCCACGTGCTGGGCAGCGGGGCCGGACCAGACATCGACCGCGCCCAGTGTGTTATCCGCATGAATGACGCCCCCCTATCGGGGTTCGAACGTGACGTGGGGAGCCGGACCACCCTCAGGGTGGTGGCTCACTCGAGTGTGTTCAGGGTGGTTCGACGGCCAGCTGAGTTTCTCAACCTCACAGACCACCAGGCAAATTCTGCAGTCATATTCTGGGGACCACCCACCAAGATTGGTAGAGAGGCTAAAGGAACACTGTACCGTCTGATCCAGAGAGTCAGCATGACCTACAGTAACCTGTCCAGCTTTACCATCACGCCTAGCAAGATGCACAAGTTTGATACACTGTTTCAGAAggagacagggcaagacagAGCAAAGTCTCAGTCCTGGTTGAGCACCGGCTGGTTCACAATGGTGATTGCGATAGAGAAGTGTGACAATATTAAAGTGTATGGGATGGTTCCGCCCAGTCACTGTGGAAAAAAGCCCCAGCCCAAGAAGATGCCTTACCACTACTATAAACCCAGAGGCACAGATGAGTGTGTGACCTACCTGCAAAATGAGAGGGGTCGGAAGGGCCCCCACCATCGCTTCATCACAGAGAAACAGGTGTTTGCACGCTGGGCCAAGCAGTATAACATCACCTTCACTCACCCAACATGGTGAGATGACTAGTTCCTTCAACAAAGTTAGACCAAGGTATGAGAGAGGTGACGCACACATCTGGACCAGGGTCCTGGACAGTGCACgaatacccttttcacactactggACCAAACTGAGCTGAGCCTAGCTGGGCATCTACCATACAGTAGTTGCTGGAACTGTGATGTAAAGGACAACGTGAAAAGAAAATATCAGAGCCAGCACGTGTATGGTTCAGGTTGGCCCTATTATGTCAATCGGGCAATAAGTTGAATATACTTTATTATTCTTATAGAACTACACATTTCTGTGTCCCCTTCTCCGAATGGCAGCCATTTCTGTAGCTCTGTGATGGACCTGAGCTTAGTTTGTAAACATTAATATACATTCTGAAtgggcttctttttttttttacagtgcaaAATCTAATTTTATGGGATTTTGTAAATACGCTATTTCCTGTGTTTGGCAAGGAAGTTTGAAGAGGGCAACTGCAAAAATATTTATTGTAAATAAACAAATTAATTGAcatttaaatatgtatttttacatGTTGATAATGCTTTTGTTAAATGTCCTCAAAAGCACTCACATAAGATAATGTCAACTTTACGAATTGAGGGAAGATTGTATTATTCAAGAagttttaaaggggaaatctgcagtaGCTACATCATTTTTTTAACTTGAGGAATATAacttaaatgcctcatgagctttgtTGAACTTTCTTACCCCATCAGAACTGAAAATATAAACAAATACTGTATAACCTCAAAGCAAAAACTACCATTTTTATATCGtgttcagtccttgcatccatagctctatgaatgagtggttacatttctccatccCTTAGTGAAACAGTGGGAGTACACTTGTTTCAACGCTTTAAAGGAATTCATGAGACCTTTATATGCTTACAGACAGTATGGCTAAAGTTAAGTGACATGTTGTTTGTAGCATTACCGTATCCAATCTAACCTTTTATGGCTCAGTGTTAACATACCAACATCAGAACACAAGCTTACATTTATAGCGCTGTAGGTTGGCTCGTGCCAAGCCCATGGATTCACACCATGCCTGTTGAATGTAGGGGTGTGTGAGCTTCTGTAAGGCATTCACACAAATGTGCTGTATTAAATACCAAGTAGTTTTATCCTGTCTAACCACGACATGGACGAACGTTGCCTCGTCATCATGCTTGACCCTTTACCTCTGACATCTTGAGGCATGCAGCGGTCTGAGTTTGAATAATTCTAATTAATGTATTGCGGTATTCATTAGCATCACTGAACAGAATGTATTGCATTATTTATTGTTAGCATTGTGTTCAGCAACTTCTCTTCATGTATGTTCTGTAATGCGTCTTGAGAACAAATTACATAAACTGATGCATATAAATGACTTAATTCACCTGGAATCCTATACAGAGGGGATAGTAGAAACAGAGCAAAGCTAGCGTTAGCTTTAACTAGCAAAATGCTACCAAAGAGAGAGGATATAAATAAGGAAACACCCAGAATGAGGTCTCATGGCCAAGACACTAGGTTCTTCTTCACTTGTGCTGTGATCTCTTActcttgaaaaaataaaaaaaacagca
>XM_036976914.1
GGGGGACTGATCAAACGTCAATGATGCACAGATCTCATATGGATAAAACAACGAATTGCAAGGGCCTAAGAGCCAGAAGATGGTGATCTTCGGGGCCATCTTCCTCCTGAtgaccctcctcatcctctttagCTCTAACAGCGGCAACGACATCAGTCCCTTCTACAGTCCCTTTCGGGCGTCCTCGCCTCATCACCCCATCAAGGTCACTGACCTCAAGAAATGGGCAGGGAAGGAGGGCTATGTGGCTGTCTATGGAAACAAGAGTCTGACCCTGCACTGCCACCACTGTGCCCTGGTGACCAGCTCCAGCCACGTGCTGGGCAGCGGGGCCGGACCAGACATCGACCGCGCCCAGTGTGTTATCCGCATGAATGACGCCCCCCTATCGGGGTTCGAACGTGACGTGGGGAGCCGGACCACCCTCAGGGTGGTGGCTCACTCGAGTGTGTTCAGGGTGGTTCGACGGCCAGCTGAGTTTCTCAACCTCACAGACCACCAGGCAAATTCTGCAGTCATATTCTGGGGACCACCCACCAAGATTGGTAGAGAGGCTAAAGGAACACTGTACCGTCTGATCCAGAGAGTCAGCATGACCTACAGTAACCTGTCCAGCTTTACCATCACGCCTAGCAAGATGCACAAGTTTGATACACTGTTTCAGAAggagacagggcaagacagAGCAAAGTCTCAGTCCTGGTTGAGCACCGGCTGGTTCACAATGGTGATTGCGATAGAGAAGTGTGACAATATTAAAGTGTATGGGATGGTTCCGCCCAGTCACTGTGGAAAAAAGCCCCAGCCCAAGAAGATGCCTTACCACTACTATAAACCCAGAGGCACAGATGAGTGTGTGACCTACCTGCAAAATGAGAGGGGTCGGAAGGGCCCCCACCATCGCTTCATCACAGAGAAACAGGTGTTTGCACGCTGGGCCAAGCAGTATAACATCACCTTCACTCACCCAACATGGTGAGATGACTAGTTCCTTCAACAAAGTTAGACCAAGGTATGAGAGAGGTGACGCACACATCTGGACCAGGGTCCTGGACAGTGCACgaatacccttttcacactactggACCAAACTGAGCTGAGCCTAGCTGGGCATCTACCATACAGTAGTTGCTGGAACTGTGATGTAAAGGACAACGTGAAAAGAAAATATCAGAGCCAGCACGTGTATGGTTCAGGTTGGCCCTATTATGTCAATCGGGCAATAAGTTGAATATACTTTATTATTCTTATAGAACTACACATTTCTGTGTCCCCTTCTCCGAATGGCAGCCATTTCTGTAGCTCTGTGATGGACCTGAGCTTAGTTTGTAAACATTAATATACATTCTGAAtgggcttctttttttttttacagtgcaaAATCTAATTTTATGGGATTTTGTAAATACGCTATTTCCTGTGTTTGGCAAGGAAGTTTGAAGAGGGCAACTGCAAAAATATTTATTGTAAATAAACAAATTAATTGAcatttaaatatgtatttttacatGTTGATAATGCTTTTGTTAAATGTCCTCAAAAGCACTCACATAAGATAATGTCAACTTTACGAATTGAGGGAAGATTGTATTATTCAAGAagttttaaaggggaaatctgcagtaGCTACATCATTTTTTTAACTTGAGGAATATAacttaaatgcctcatgagctttgtTGAACTTTCTTACCCCATCAGAACTGAAAATATAAACAAATACTGTATAACCTCAAAGCAAAAACTACCATTTTTATATCGtgttcagtccttgcatccatagctctatgaatgagtggttacatttctccatccCTTAGTGAAACAGTGGGAGTACACTTGTTTCAACGCTTTAAAGGAATTCATGAGACCTTTATATGCTTACAGACAGTATGGCTAAAGTTAAGTGACATGTTGTTTGTAGCATTACCGTATCCAATCTAACCTTTTATGGCTCAGTGTTAACATACCAACATCAGAACACAAGCTTACATTTATAGCGCTGTAGGTTGGCTCGTGCCAAGCCCATGGATTCACACCATGCCTGTTGAATGTAGGGGTGTGTGAGCTTCTGTAAGGCATTCACACAAATGTGCTGTATTAAATACCAAGTAGTTTTATCCTGTCTAACCACGACATGGACGAACGTTGCCTCGTCATCATGCTTGACCCTTTACCTCTGACATCTTGAGGCATGCAGCGGTCTGAGTTTGAATAATTCTAATTAATGTATTGCGGTATTCATTAGCATCACTGAACAGAATGTATTGCATTATTTATTGTTAGCATTGTGTTCAGCAACTTCTCTTCATGTATGTTCTGTAATGCGTCTTGAGAACAAATTACATAAACTGATGCATATAAATGACTTAATTCACCTGGAATCCTATACAGAGGGGATAGTAGAAACAGAGCAAAGCTAGCGTTAGCTTTAACTAGCAAAATGCTACCAAAGAGAGAGGATATAAATAAGGAAACACCCAGAATGAGGTCTCATGGCCAAGACACTAGGTTCTTCTTCACTTGTGCTGTGATCTCTTActcttgaaaaaataaaaaaaacagca
>XM_021601898.2
CATCTGACACTAGCTACCAGCATGTTTAGCCAACTGTACAAAGTTTCTACCTGCAGTAGCTTGCAAAGTAAACGTCAGCTAACCGTCCCATGGCAAATGCTCCCTTCTGCTGCTTGACAGGCAGACCAAAAAATATGTGGAATTAACCTAAACCATGCATACTTGTCAGGGGTGGTGACCAGAAAAGCACAGAACATGCAATGTAGCTCAGCCTGACTTGGAAGCATGGGGATGAGGCTTGTTGAAAAGCAAGGGCCTAAGAGCCAGAAGATGGTGATCTTCGGGGCCATCTTCCTCCTGAtgaccctcctcatcctctttagCTCTAACAGCGGCAACGACATCAGTCCCTTCTACAGTCCCTTTCGGGCGTCCTCGCCTCATCACCCCATCAAGGTCACTGACCTCAAGAAATGGGCAGGGAAGGAGGGCTATGTGGCTGTCTATGGAAACAAGAGTCTGACCCTGCACTGCCACCACTGTGCCCTGGTGACCAGCTCCAGCCACGTGCTGGGCAGCGGGGCCGGACCAGACATCGACCGCGCCCAGTGTGTTATCCGCATGAATGACGCCCCCCTATCGGGGTTCGAACGTGACGTGGGGAGCCGGACCACCCTCAGGGTGGTGGCTCACTCGAGTGTGTTCAGGGTGGTTCGACGGCCAGCTGAGTTTCTCAACCTCACAGACCACCAGGCAAATTCTGCAGTCATATTCTGGGGACCACCCACCAAGATTGGTAGAGAGGCTAAAGGAACACTGTACCGTCTGATCCAGAGAGTCAGCATGACCTACAGTAACCTGTCCAGCTTTACCATCACGCCTAGCAAGATGCACAAGTTTGATACACTGTTTCAGAAggagacagggcaagacagAGCAAAGTCTCAGTCCTGGTTGAGCACCGGCTGGTTCACAATGGTGATTGCGATAGAGAAGTGTGACAATATTAAAGTGTATGGGATGGTTCCGCCCAGTCACTGTGGAAAAAAGCCCCAGCCCAAGAAGATGCCTTACCACTACTATAAACCCAGAGGCACAGATGAGTGTGTGACCTACCTGCAAAATGAGAGGGGTCGGAAGGGCCCCCACCATCGCTTCATCACAGAGAAACAGGTGTTTGCACGCTGGGCCAAGCAGTATAACATCACCTTCACTCACCCAACATGGTGAGATGACTAGTTCCTTCAACAAAGTTAGACCAAGGTATGAGAGAGGTGACGCACACATCTGGACCAGGGTCCTGGACAGTGCACgaatacccttttcacactactggACCAAACTGAGCTGAGCCTAGCTGGGCATCTACCATACAGTAGTTGCTGGAACTGTGATGTAAAGGACAACGTGAAAAGAAAATATCAGAGCCAGCACGTGTATGGTTCAGGTTGGCCCTATTATGTCAATCGGGCAATAAGTTGAATATACTTTATTATTCTTATAGAACTACACATTTCTGTGTCCCCTTCTCCGAATGGCAGCCATTTCTGTAGCTCTGTGATGGACCTGAGCTTAGTTTGTAAACATTAATATACATTCTGAAtgggcttctttttttttttacagtgcaaAATCTAATTTTATGGGATTTTGTAAATACGCTATTTCCTGTGTTTGGCAAGGAAGTTTGAAGAGGGCAACTGCAAAAATATTTATTGTAAATAAACAAATTAATTGAcatttaaatatgtatttttacatGTTGATAATGCTTTTGTTAAATGTCCTCAAAAGCACTCACATAAGATAATGTCAACTTTACGAATTGAGGGAAGATTGTATTATTCAAGAagttttaaaggggaaatctgcagtaGCTACATCATTTTTTTAACTTGAGGAATATAacttaaatgcctcatgagctttgtTGAACTTTCTTACCCCATCAGAACTGAAAATATAAACAAATACTGTATAACCTCAAAGCAAAAACTACCATTTTTATATCGtgttcagtccttgcatccatagctctatgaatgagtggttacatttctccatccCTTAGTGAAACAGTGGGAGTACACTTGTTTCAACGCTTTAAAGGAATTCATGAGACCTTTATATGCTTACAGACAGTATGGCTAAAGTTAAGTGACATGTTGTTTGTAGCATTACCGTATCCAATCTAACCTTTTATGGCTCAGTGTTAACATACCAACATCAGAACACAAGCTTACATTTATAGCGCTGTAGGTTGGCTCGTGCCAAGCCCATGGATTCACACCATGCCTGTTGAATGTAGGGGTGTGTGAGCTTCTGTAAGGCATTCACACAAATGTGCTGTATTAAATACCAAGTAGTTTTATCCTGTCTAACCACGACATGGACGAACGTTGCCTCGTCATCATGCTTGACCCTTTACCTCTGACATCTTGAGGCATGCAGCGGTCTGAGTTTGAATAATTCTAATTAATGTATTGCGGTATTCATTAGCATCACTGAACAGAATGTATTGCATTATTTATTGTTAGCATTGTGTTCAGCAACTTCTCTTCATGTATGTTCTGTAATGCGTCTTGAGAACAAATTACATAAACTGATGCATATAAATGACTTAATTCACCTGGAATCCTATACAGAGGGGATAGTAGAAACAGAGCAAAGCTAGCGTTAGCTTTAACTAGCAAAATGCTACCAAAGAGAGAGGATATAAATAAGGAAACACCCAGAATGAGGTCTCATGGCCAAGACACTAGGTTCTTCTTCACTTGTGCTGTGATCTCTTActcttgaaaaaataaaaaaaacagca

Function

NR:

description
PREDICTED: alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 isoform X1

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008373 sialyltransferase activity molecular_function

KEGG:

id description
K03376 SIAT7F, ST6GalNAc VI; N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7F)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601897.2 False 2695 mRNA 0.44 6 15756259 15772026
XM_036976914.1 False 2567 mRNA 0.44 5 15756307 15772026
XM_021601898.2 True 2758 mRNA 0.44 6 15757527 15772026

Neighbor

gene id symbol gene type direction distance location
st6galnac4 st6galnac4 coding upstream 69 15750191 ~ 15756190 (+)
LOC110523300 LOC105028392 coding upstream 164816 15464555 ~ 15591443 (+)
uck1 LOC106569943 coding upstream 610739 15117198 ~ 15187954 (+)
LOC110519478 LOC106596183 coding upstream 659502 15086878 ~ 15096757 (+)
LOC110518158 LOC106596183 coding upstream 680701 15065627 ~ 15075700 (+)
LOC110523312 surf1 coding downstream 16769 15788795 ~ 15791028 (+)
med22 med22 coding downstream 24151 15796177 ~ 15810502 (+)
usp20 LOC106569850 coding downstream 44774 15816800 ~ 15839459 (+)
LOC118964570 NA coding downstream 57507 15829533 ~ 15831741 (+)
ptges ptges coding downstream 80543 15852569 ~ 15858360 (+)
G371612 NA non-coding upstream 41664 15714329 ~ 15714595 (+)
G371610 NA non-coding upstream 43058 15712970 ~ 15713201 (+)
G371598 NA non-coding upstream 57568 15690051 ~ 15698691 (+)
G371597 NA non-coding upstream 67812 15688226 ~ 15688447 (+)
G371567 LOC106569805 non-coding upstream 104823 15650978 ~ 15651436 (+)
G371615 LOC100194725 non-coding downstream 19533 15791559 ~ 15795122 (+)
G371632 NA non-coding downstream 43179 15815205 ~ 15815749 (+)
G371639 NA non-coding downstream 79344 15851370 ~ 15851721 (+)
G371653 NA non-coding downstream 97747 15869773 ~ 15870026 (+)
G371656 NA non-coding downstream 115212 15887238 ~ 15916078 (+)
G371182 NA other upstream 627442 15124290 ~ 15128817 (+)
LOC110519479 LOC106596183 other upstream 702703 15047739 ~ 15054353 (+)
LOC118964542 LOC106569496 other upstream 950788 14798616 ~ 14805526 (+)
G370414 NA other upstream 1388098 14367672 ~ 14368161 (+)
G370382 smarcb1 other upstream 1430364 14321104 ~ 14325895 (+)
G372281 LOC106569177 other downstream 447580 16218328 ~ 16220933 (+)
G372373 NA other downstream 963616 16735642 ~ 16738500 (+)
G372618 LOC105030512 other downstream 1098408 16870434 ~ 16882185 (+)
G373726 NA other downstream 1932087 17704113 ~ 17707757 (+)

Expression


Co-expression Network