surf6 (surf6)


Basic Information

Item Value
gene id surf6
gene name surf6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15786468 ~ 15788812 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601903.2
GATTGGGTTTGATGTAACTACATCCGGTCCAACCAGACTTCAATGTGACGCCCATTTCAGTCTGTACACGTGCATTTGTAGCTAGCTAGTACTTTTAATGCTGTCTGTCTTTGGTTGTCATTTTAACagcaaatgttgcaattttatTTTGATCATCATAAGTAAAGTTATTTATTCACCATTGGTTAAGGTATCAGAAAGATGACCTGCAACATCTCACTCATACTTTCTGTTTGAAGAGGGACTTTACATTAGCTAGTGGCTATTTATTGTTAGCAGATTCGTGGTTGTCGATTTTTTTTTTGTTCGAGAAATGGCAAGTCTTGCTTCAAAGGACTCATACCTTCAGAAATTGGCGAGTAAAGTATGTGCTCAACAGCAAGAACCAAGGAATAGGCCATTTGTCCCTTTTCAAGGTGGACGTGTGGCTGGCCCTCCAAAGAAGAGGAACAAAACCAATCACAAACAGATAAGTGTAAACAGCAATGTAGCGAAACACCAGAAGTTACCTTTGAAGCCAAACAAGAAGCTTGCCATCACCCCAGCACAGAGAGCACCTGGTGTAGTAGAACAGAAGATCTCAAAAGCTACAGTTCCAAATGGGGTGGTGGTTGAGACTAAACAGAAGCCCAAAGGTGGAAAGCCAGGTACTAAATTCTCCACGGTAGATATTCTACGGCAGAGACTTCATGAGAAGATTGAGGAGTCTCGTGGCCAGGGAACCCCTAAGGACCCATCCTCTGAGGAGGTGCAGAAGAAGCGAGAGAAGAGAAAGCAGGAGAGGGAGCGCAAGAAGAGGAAGCGTAAAGAGTTCCTCATTAAGAAGCTCGCTGAGAAAGCTGGCTTAGAGTATGAGCCTGAGATCAAAAGGGAAGAGGCCCCTCCTCCCACCGCACCAGCTGCGGGCAAGCGGGACGAGACAGCCATCGTCTTCAACAAGGTGGAGCTGGGCGATGGTGGGTTCTTGGACAAAGagcagaagaagaaggagaagaagaaccGGATAAAAGGCGGCCTGACACCGCTGGTAGGCAAGAACTACAAGCAGTTGCTGGGGCGCGTGGAGGCTCGCAAGGCTAAGCTGGAGGAGCTGCGGGAGAAGGATGAGGGCAAGGCCAAGGTGCAGGAGGAGAAGATGAAGTGGACCAATGTGCTGTACAAGGCAGAGGGTCTGAAGATCAAGGATGATGAGAACTTGCTGAGAGCCTCGCTCAAGAGGAAAGAGAAGATGCGCTCGCAGCGGAAGAAGAAGTGGACGGAGCGCAGCGAGACGGTGGTGGAGAAGATGCAAAGGCGACAGGACAAGAGACGCAGGAACATCCAGAAGAACAACAAGGGCAAAGTGGAGAAGAAAAAGGACCGGGCCAGGAAGAGGGGCCGCGTGCTGCCTGAAGACCTGAAGAAGGCTCAGGTGTAGGTGGATGGGGAGGAGGGTCAAGCTGAGGGTTGTGGAAAATGGCTGGATTAATTGATGAACATGTCTTTTTGATTGAGCTCTACTGCTTTTTTGTGGTATGGTGCTTTGTCCAGTGTCCACATAATATTCACAATGCTTTGGACTTATGTTAAAAGCCACTGGACAGAGCAAAGACCCAATACAGGGTTCCTCAAGGTTTGAATAACCCGAGCTCTTTGTCAAATCAATGCTTGCTTTTTTACTTTTTATTCTGTTGGTCGCAATGTTTGACACATGCCATGGATGTCCTGTATTGAAAGTGTAAGCTTCAGTTTAAAATACTTAACTTCATCTGATTTCTCTATATTGAATGTCAATGTTTTGCTAAATGTAATTGAACTTAAGAAATATGCCCATATTAACTA

Function

symbol description
surf6 Acts upstream of or within heart development. Predicted to be located in nucleus. Is expressed in several structures, including alar plate midbrain region; immature eye; midbrain; retina; and segmental plate. Orthologous to human SURF6 (surfeit 6).

NR:

description
surfeit locus protein 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601903.2 True 1821 mRNA 0.46 4 15786468 15788812

Neighbor

gene id symbol gene type direction distance location
kyat1 LOC106569847 coding downstream 337 15775909 ~ 15786131 (-)
spout1 spout1 coding downstream 10679 15770905 ~ 15775789 (-)
miga2 miga2 coding downstream 33715 15740073 ~ 15752753 (-)
dolpp1 dolpp1 coding downstream 51599 15723789 ~ 15734869 (-)
LOC110523302 NA coding downstream 78861 15693396 ~ 15707607 (-)
rpl7a rpl7a coding upstream 2699 15791511 ~ 15795413 (-)
LOC118964749 NA coding upstream 4832 15793644 ~ 15793713 (-)
LOC118964748 NA coding upstream 5215 15794027 ~ 15794103 (-)
LOC118964747 NA coding upstream 5532 15794344 ~ 15794415 (-)
LOC118964756 NA coding upstream 5927 15794739 ~ 15794807 (-)
G372015 NA non-coding downstream 100357 15685898 ~ 15686111 (-)
G371956 NA non-coding downstream 178835 15598237 ~ 15607633 (-)
G371954 NA non-coding downstream 179301 15603974 ~ 15607167 (-)
G371994 NA non-coding downstream 191184 15593717 ~ 15595284 (-)
G372054 NA non-coding upstream 28028 15816840 ~ 15817633 (-)
G372056 NA non-coding upstream 30172 15818984 ~ 15819222 (-)
G372058 NA non-coding upstream 32873 15821685 ~ 15821906 (-)
G372059 NA non-coding upstream 33646 15822458 ~ 15822944 (-)
G372060 NA non-coding upstream 34489 15823301 ~ 15823630 (-)
G371294 LOC106569911 other downstream 661679 15123475 ~ 15124789 (-)
LOC110524957 LOC106569957 other downstream 791309 14988147 ~ 14995197 (-)
G370635 NA other downstream 1357877 14427338 ~ 14428591 (-)
G370333 NA other downstream 1577763 14207190 ~ 14208705 (-)
G372122 NA other upstream 186794 15975606 ~ 15976116 (-)
G372123 NA other upstream 189690 15978502 ~ 15981215 (-)
LOC110523341 LOC106569324 other upstream 1145423 16909582 ~ 16942359 (-)
G373228 LOC106569424 other upstream 1335225 17124037 ~ 17125807 (-)
LOC110523354 LOC106569496 other upstream 1700214 17483696 ~ 17521507 (-)

Expression


Co-expression Network