rpl7a (rpl7a)


Basic Information

Item Value
gene id rpl7a
gene name rpl7a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15791511 ~ 15795413 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601906.2
CCAGTCTACTTTTTTAAACAGCCTAAAGGCAAGAAGTCTAAGGGGAAGAAGGTGGCACCAGCCCCTTCTGTGGCCAAAAAGCATGAGGCCAAGAAAGTGGTCAACCCCCTGTTCGAGAAGAGGCCAAAGAACTATGGCATTGGTCAGGACATCCAGCCAAAGCGTGATTTGACACGCTTTGTGAAATGGCCCCGTTACATCCGCCTGCAGAGGCAGCGCTCCATCCTGTACAAGCGTCTGAAGGTCCCCCCAGCGATCAACCAGTTCACCCAGGCACTAGACCGCCAGACTGCCACACAGCTGTTCAAGCTGGCCCACAAGTACAGGCCGGAGACCAAGCAGGAGAAGAAGCAGCGGCTGCTGGCCCGCGCTGAACAGAAGGCCGCTGGAAAGGGAGACACCCCAACAAAGAGGCCACCTGTTCTCCGTGCAGGTGTGAACACTGTCACCACTCTGGTGGAAAGCAAGAAGGCCCAGCTGGTGGTCATTGCCCACGATGTGGACCCTATTGAGCTGGTGGTCTTCCTGCCTGCTCTGTGTCGCAAGATGGGCGTCCCTTACTGCATTGTCAAGGGCAAggccaggctgggaagactggtGCACAGAAAGACCTGTACCTCAGTTGCCTTCACACAGACAAACCCTGAAGACAAAGGTTCCCTTGCCAAGCTGGTGGAAGCCATCAAGACCAACTACAATGACCGATATGAGGAGATCCGTCGTCACTGGGGGTGGTATCATGGGTCCGAAGTCCACAGCCCGTATTGCCAAGCTGGAGAAGGCTAAGGCCAAGGAACTGGCCACCAAGCTCGGATAAACTGTTTGATATCAAAATAAATGTCTCAAGAAATATGCTCTTGTTTTTTGTCCAATGAGAACCCCTATGTTATGCATGTTAGCCTTAAATGGATTTTGTGCTGATCACATGAGTTTCAAATGTCAACGGTAGTGGCACATTTTGTGTATTGAATCTATAAAATAAATGATCATACACCA

Function

symbol description
rpl7a Predicted to enable RNA binding activity. Predicted to be involved in maturation of LSU-rRNA. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in brain; eye; immature eye; neural plate; and presumptive neural plate. Orthologous to human RPL7A (ribosomal protein L7a).

NR:

description
60S ribosomal protein L7a

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0005840 ribosome cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601906.2 True 996 mRNA 0.52 8 15791511 15795413

Neighbor

gene id symbol gene type direction distance location
surf6 surf6 coding downstream 2699 15786468 ~ 15788812 (-)
kyat1 LOC106569847 coding downstream 5380 15775909 ~ 15786131 (-)
spout1 spout1 coding downstream 15722 15770905 ~ 15775789 (-)
miga2 miga2 coding downstream 38758 15740073 ~ 15752753 (-)
dolpp1 dolpp1 coding downstream 56642 15723789 ~ 15734869 (-)
LOC118964750 NA coding upstream 50 15795463 ~ 15795537 (-)
c5h9orf78 cssa01h9orf78 coding upstream 15165 15810578 ~ 15814802 (-)
LOC118964568 LOC106568982 coding upstream 77365 15872778 ~ 15895178 (-)
LOC118964569 LOC106594099 coding upstream 103264 15898677 ~ 15899294 (-)
LOC110523317 LOC106568982 coding upstream 106803 15902216 ~ 15926643 (-)
LOC110523302 NA non-coding downstream 83984 15693396 ~ 15707607 (-)
G372015 NA non-coding downstream 105400 15685898 ~ 15686111 (-)
G371956 NA non-coding downstream 183878 15598237 ~ 15607633 (-)
G371954 NA non-coding downstream 184344 15603974 ~ 15607167 (-)
G371994 NA non-coding downstream 196227 15593717 ~ 15595284 (-)
G372054 NA non-coding upstream 21427 15816840 ~ 15817633 (-)
G372056 NA non-coding upstream 23571 15818984 ~ 15819222 (-)
G372058 NA non-coding upstream 26272 15821685 ~ 15821906 (-)
G372059 NA non-coding upstream 27045 15822458 ~ 15822944 (-)
G372060 NA non-coding upstream 27888 15823301 ~ 15823630 (-)
G371294 LOC106569911 other downstream 666722 15123475 ~ 15124789 (-)
LOC110524957 LOC106569957 other downstream 796352 14988147 ~ 14995197 (-)
G370635 NA other downstream 1362920 14427338 ~ 14428591 (-)
G370333 NA other downstream 1582806 14207190 ~ 14208705 (-)
G372122 NA other upstream 180193 15975606 ~ 15976116 (-)
G372123 NA other upstream 183089 15978502 ~ 15981215 (-)
LOC110523341 LOC106569324 other upstream 1138822 16909582 ~ 16942359 (-)
G373228 LOC106569424 other upstream 1328624 17124037 ~ 17125807 (-)
LOC110523354 LOC106569496 other upstream 1693613 17483696 ~ 17521507 (-)

Expression


Co-expression Network