med22 (med22)


Basic Information

Item Value
gene id med22
gene name med22
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15796177 ~ 15810502 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601908.2
TGTTGGATCAGACAGAAAGGAAGATCCATGGATTGTGGGTAATTTAAGTACCGCGAGACATTTATGTGACGTCATAAACAATCGACGGCAGTGGTGATTTTGAACGGGATGTGCACCTTTCTATTTTCATAAATAATAGTTTCAACAATGTATTAGGAGGGGTTTGTTTACATTCCTGAATACGATGGCCAATCAAAGAGCGCTCCCTCAAAGCAAGGAGAGTCTTCTTCAGAACTACAACAAAAGACTGAAGGATGATATCAGGTCCATTCTAGATAACCTCACGGAAATCATAAAAACCGCAAAGGTAGAGGACGAGACACAGGTCTCTCGGGCTACTCAGGCTGAGCAGGACCACTATGAGATGCACGTCAGAGCAGCCAACATTGTGCGTGCGGGCGAGTCCCTGATGAAGCTAGTGTCGGACCTGAAACAGTTCCTGATCCTCAACGACTTCCCTTCGGTCAACGAGGCCATCAGCCTGCAGAACCAGCAGCTGCGCTCGCTGCAGGAGGAGTGCGACAAGAAGCTCACCTCGCTCCGTGACGAGATCGCCATCGACCTGTACGAGCTAGAGGAAGAATATTACTCCTCCAGGTACAAGTAGGCTCATACTGCACAGTCAAGGTTCGGTTGATCCACTCTATCTTGACTTATAGCCCCTATTCCCCCTCACTGTCGTGCCTTATGAAGGGTTTATCTTACcccaccacctcagtcatcgccATTAGTCCTTTAGTGTCTCTGTGTATTGCGTCAACTTCAATAGAATATCCAAATGCTGGTTTTAACAGCAAAATAGATGGTTGATCTATGGGCAAAGTTATTTTGCAGTACATTCACCATGATGAATCTAATCTCATTTGGTTGAAAATTAAATTATGTGCCTTGTT
>XM_021601907.2
GTTGGATCAGACAGAAAGGAAGATCCATGGATTGTGGGTAATTTAAGTACCGCGAGACATTTATGTGACGTCATAAACAATCGACGGCAGTGGTGATTTTGAACGGGATGTGCACCTTTCTATTTTCATAAATAATAGTTTCAACAATGTATTAGGAGGGGTTTGTTTACATTCCTGAATACGATGGCCAATCAAAGAGCGCTCCCTCAAAGCAAGGAGAGTCTTCTTCAGAACTACAACAAAAGACTGAAGGATGATATCAGGTCCATTCTAGATAACCTCACGGAAATCATAAAAACCGCAAAGGTAGAGGACGAGACACAGGTCTCTCGGGCTACTCAGGCTGAGCAGGACCACTATGAGATGCACGTCAGAGCAGCCAACATTGTGCGTGCGGGCGAGTCCCTGATGAAGCTAGTGTCGGACCTGAAACAGTTCCTGATCCTCAACGACTTCCCTTCGGTCAACGAGGCCATCAGCCTGCAGAACCAGCAGCTGCGCTCGCTGCAGGAGGAGTGCGACAAGAAGCTCACCTCGCTCCGTGACGAGATCGCCATCGACCTGTACGAGCTAGAGGAAGAATATTACTCCTCCAGCTACGGTCAGTGGGACAGTACCGACCTGCCCCTGTGTGAGGCCTACTGGCGTTGGGACAGTTGGGCGTCCCCGGACGGGGGCGCCACCTCCGGGTCAGCCCAGGGGGTCGAGGAGGACACAGACGGACCTGCCTCCCAGGAGACCACCCCCAAACACCACCTCAACGGACACGGGACCACCGCCGCAGCAGACAAGCCCTAAAGCAGACCACATATAGATGTAGAATGGACCTCTCCCTCCAACACTGTCACTCAGATTCTCAGTGGTACGTAGATTAGTGTTAATGTATCATAGTCTATCCATGTACAGTATGACAAGTCTTCCACTGTCAGTGTGTCTGGTGGAAATGGGGGGCAAGCAAAACTGAAGACCTTTAATGTTTCAAGGGTATTCCTCTGTATACTTTAATATTACAAGGGATCAGTATGATGAACACTGTTGATAAGCTAACGTTACACTCCAACTGCACAAATATCACTCATACTTTAATTAATCAATAATGGTAATCCATCTAAGGTTGCTTCTCCGATAGTTTATAAATGCTGTAAGCTCTGTAGCAAGGTATCCGACCAAATGGATAGAGTATGTAATTTTTTTTTTCCAAGTTAAATTTGGACAAGATTAGAGATAATGCTTAATGCAACTAGTGTGAAGACTTAGCTGGCCCAAACAACTTGTTTTTGCCCTGTCGGTCTAATATCCCCATTACATACACTTGTTGAGATTTAGTTTGAAAGACATTTCAGTTACCCCAGTGGCAGAAACATGGTGCATTACTGATGCCAATTTCTTTATTTTGGTTAATTTGTCTAAATGTATGACCATAAGACTGCATGTCATGCAAATGTATGGATGTTATGTTCTTGGATATCTTTTGTAGCATTGTTTTTGTAATTTTGCAATTTCAGTTAGTAAGCTTTTAATTGCATGAAGAATTTGACAAGTGAATAAAACACCATTATAAACTCAA

Function

symbol description
med22 Predicted to enable transcription coregulator activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED22 (mediator complex subunit 22).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 22 isoform X1

GO: NA

KEGG:

id description
K15139 MED22; mediator of RNA polymerase II transcription subunit 22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601908.2 False 893 mRNA 0.46 4 15796177 15802214
XM_021601907.2 True 1567 mRNA 0.45 5 15796178 15810502

Neighbor

gene id symbol gene type direction distance location
LOC110523312 surf1 coding upstream 5149 15788795 ~ 15791028 (+)
st6galnac6 sia7f coding upstream 24151 15756259 ~ 15772026 (+)
st6galnac4 st6galnac4 coding upstream 39987 15750191 ~ 15756190 (+)
LOC110523300 LOC105028392 coding upstream 204734 15464555 ~ 15591443 (+)
uck1 LOC106569943 coding upstream 650657 15117198 ~ 15187954 (+)
usp20 LOC106569850 coding downstream 6298 15816800 ~ 15839459 (+)
LOC118964570 NA coding downstream 19031 15829533 ~ 15831741 (+)
ptges ptges coding downstream 42067 15852569 ~ 15858360 (+)
LOC110523326 dusp26 coding downstream 623761 16434263 ~ 16437732 (+)
LOC110523327 LOC105015301 coding downstream 644093 16454595 ~ 16470342 (+)
G371615 LOC100194725 non-coding upstream 2553 15791559 ~ 15795122 (+)
G371612 NA non-coding upstream 81582 15714329 ~ 15714595 (+)
G371610 NA non-coding upstream 82976 15712970 ~ 15713201 (+)
G371598 NA non-coding upstream 97486 15690051 ~ 15698691 (+)
G371597 NA non-coding upstream 107730 15688226 ~ 15688447 (+)
G371632 NA non-coding downstream 4703 15815205 ~ 15815749 (+)
G371639 NA non-coding downstream 40868 15851370 ~ 15851721 (+)
G371653 NA non-coding downstream 59271 15869773 ~ 15870026 (+)
G371656 NA non-coding downstream 76736 15887238 ~ 15916078 (+)
G371661 LOC106594099 non-coding downstream 83873 15894375 ~ 15899296 (+)
G371182 NA other upstream 667360 15124290 ~ 15128817 (+)
LOC110519479 LOC106596183 other upstream 742621 15047739 ~ 15054353 (+)
LOC118964542 LOC106569496 other upstream 990706 14798616 ~ 14805526 (+)
G370414 NA other upstream 1428016 14367672 ~ 14368161 (+)
G372281 LOC106569177 other downstream 409104 16218328 ~ 16220933 (+)
G372373 NA other downstream 925140 16735642 ~ 16738500 (+)
G372618 LOC105030512 other downstream 1059932 16870434 ~ 16882185 (+)
G373726 NA other downstream 1893611 17704113 ~ 17707757 (+)
arhgef28a LOC106568988 other downstream 2256941 18067350 ~ 18177035 (+)

Expression


Co-expression Network