LOC118964570


Basic Information

Item Value
gene id LOC118964570
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15829533 ~ 15831741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051665.1
ACTGTACTTAACCGACCACAAAAACACACCCTAAACATCAACTACACCTTTCTCTGCCAGCACGGAGGTCAGTACTGTACTGGACCTACCACAAAAACACACCCTAAACATCAACTACACCTTTCTCTGCCAGTACGGAGGTCAGTACTGTACTTAACCGACCACAAAAACACACCCTAAACATCAACTACACCTTTCTCTGCCAGCACGGAGGTCAGTACTGTACTGGACCTACCACAAAAACACACCCTAAACATCAACTACACCTTTCTCTGCTAGTACGGAGATCAGTACTGTACTGGACCTACCACAAAAACACATCCTAAACATCAACTACACCTTTCTCTGCTAGTACGGAGATCAGTACTGTACTGGACCTACCACAAAAACACATCCTAAACATCAACTACACCTTTCTCTGCCAGCACGGAGGTCAGTACTGTACTGGACCTACCACAAAAACACACCCTAAACATCAACTACACCTTTCTCTGCCAGCACGGAGGTCAGAACTGTACTTAACCGACCACAAAAACACACCCTAAACATCAACTACACCTTTCTCTGCCAGCACGGAGGTCAGAACTGTACTTAACCGACCACAAAAACACACCCTAAACATCAACTACACCTTTCTCTGCTAGTACGGAGGTCAGTACTGTACTGGACCTACCACAAAAACACACCCTAAACATCAACTACACCTTTCTCTGCTAGTACGGAGGTCAGTACTGTACTGGACCTACCACAAAAACACACCCTAAACATCAACTACACCTTTCTCTGCTAGCACGGAGGTCAGTACTGTACTGGACCTACCACAAAAACACATCCTAAACATCAACTACACCTTTCTCTGCCAGCATGGAGGTCAGTACTGTACTGGACCTACCACAAAAACACACCCTAAACATCAACTACACCTTTCTCTGCTAGTACGGAGGTCAGTACTGTACTGGACCTACCACAAAAACACACCCTAAACATCAACTACACCTTTCTCTGCTAGTACGGAGGTCAGTACTGTACTGGACCTACCACAAAAACACACCCTAAACATCAACTACACCTTTCTCTGCTAGCACGGAGGTCAGTACTGTACTGGACCTACCACAAAAACACATCCTAAACATCAACTACACCTTTCTCTGCCAGCATGGAGGTCAGTACTGTACTGGACCTACCACAAAAACACACCCTAAACATCAACTACACCTTTCTCTGCCAGCATGGAGATCAGTACTGTACTGGACCTACCACAAAAACACACCCTAAACATCAACTACACCTTTCTCTGCTAGTACGGAGATCAGTACTGTACTGGACCTACCACAAAAACACACCCTAAACATCAACTACACCTTTCTCTGCTAGTACGGAGGTCAGTACTGTACTGGACCTACCACAAAAACACATCCTAAACATCAACTACACCTTTCTCTGCTAGTACGGAGATCAGTACTGTACTGGACCTACCACAAAAACACACCCTAAACATCAACTACACCTTTCTCTGCCAGCACGGAGGTCAGTACTGTACTGGACCTACCACAAAAACACACCCTAAACATCAACTACACCTTTCTCTGCCAGCACGGAGGTCAGAACTGTACTGGACCTACCACAAAAACACACCCTAAACATCAACTACACCTTTCTCTGCCAGCACGGAGGTCAGTACTGTACTGGACCTACCACAAAAACACACCCTAAACATCAACTACACCTTTCTCTGCCAGCACGGAGGTCAGTACTGTACTGGACCTACCACAAAAACACACCCTAAACATCAACTACACCTTTCTCTGCCAGCACGGAGGTCAGAACTGTACTGGACCTACCACAAAAACACACCCTAAACATCAACTACACCTTTCTCTGCCAGCACGGAGGTCAGAACTGTACTGGACCTACCACAAAAACACACCCTAAACATCAACTACACCTTTCTCTGCCAGCACGGAGGTCAGTACTGTACTGGACCTACCACAAAAACACACCCTAAACATCAACTACACCTTTCTCTGCTAGTACGGAGGTCAGAACTGTACTTAACCTACCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051665.1 True 2063 mRNA 0.46 2 15829533 15831741

Neighbor

gene id symbol gene type direction distance location
med22 med22 coding upstream 19031 15796177 ~ 15810502 (+)
LOC110523312 surf1 coding upstream 38505 15788795 ~ 15791028 (+)
st6galnac6 sia7f coding upstream 57507 15756259 ~ 15772026 (+)
st6galnac4 st6galnac4 coding upstream 73343 15750191 ~ 15756190 (+)
LOC110523300 LOC105028392 coding upstream 238090 15464555 ~ 15591443 (+)
ptges ptges coding downstream 20828 15852569 ~ 15858360 (+)
LOC110523326 dusp26 coding downstream 602522 16434263 ~ 16437732 (+)
LOC110523327 LOC105015301 coding downstream 622854 16454595 ~ 16470342 (+)
pargl LOC106569224 coding downstream 685059 16516800 ~ 16557705 (+)
LOC110523336 NA coding downstream 859164 16690905 ~ 16694551 (+)
G371632 NA non-coding upstream 13784 15815205 ~ 15815749 (+)
G371615 LOC100194725 non-coding upstream 35909 15791559 ~ 15795122 (+)
G371612 NA non-coding upstream 114938 15714329 ~ 15714595 (+)
G371610 NA non-coding upstream 116332 15712970 ~ 15713201 (+)
G371598 NA non-coding upstream 130842 15690051 ~ 15698691 (+)
G371639 NA non-coding downstream 19629 15851370 ~ 15851721 (+)
G371653 NA non-coding downstream 38032 15869773 ~ 15870026 (+)
G371656 NA non-coding downstream 55497 15887238 ~ 15916078 (+)
G371661 LOC106594099 non-coding downstream 62634 15894375 ~ 15899296 (+)
G371672 NA non-coding downstream 95025 15926766 ~ 15939264 (+)
G371182 NA other upstream 700716 15124290 ~ 15128817 (+)
LOC110519479 LOC106596183 other upstream 775977 15047739 ~ 15054353 (+)
LOC118964542 LOC106569496 other upstream 1024062 14798616 ~ 14805526 (+)
G370414 NA other upstream 1461372 14367672 ~ 14368161 (+)
G372281 LOC106569177 other downstream 387865 16218328 ~ 16220933 (+)
G372373 NA other downstream 903901 16735642 ~ 16738500 (+)
G372618 LOC105030512 other downstream 1038693 16870434 ~ 16882185 (+)
G373726 NA other downstream 1872372 17704113 ~ 17707757 (+)
arhgef28a LOC106568988 other downstream 2235702 18067350 ~ 18177035 (+)

Expression


Co-expression Network