LOC118964568 (LOC106568982)


Basic Information

Item Value
gene id LOC118964568
gene name LOC106568982
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15872778 ~ 15895178 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976901.1
CCCTTCCACAAATTCTCTTCTGGGGAAACGAAACTGATCtgagtttctctgtctgtctgtctgtctgtgtgagagtgaaCAACAACAGTCTAAATGGCTGAccagttctgttgttctgtctgtctggatctacTGAAGGAGCCGGTGGCTATTCCCTGTGGACATAGTTACTGTAGAAGTTGTATTGAGGGCTACTGTGATCAGGACGATCAGGGCATCTACAGTTGTCCTCAGTGCAGACAGACGTTCACTCCAAGGCCTACTCTGAGGAAAAATAACATGTTGGCTGAGGTGGTGGAGACACTGAAGAAGACAGGACTCCAGGCTGCTCCCCCTGCTCTGTGCTATGTTGGACCTGGAGATGTGGCGTGTGATTTCTGCACTGGgaccagaaagcagaaagccctcatgtcctgtctggtgtgtctggtgtcttactgtgagactcacctcCAGCCTCACTATGATGTTCCTGGACTAAAGAAACACAAGCTGGTCAAAGCCACCGCACAACTACAGGAGAAGATCTGCTCTCATCATGACAAAGTGCTGGAGGTTTACTGTCGTACCGATCAACAGTGCATCTGCTATCATTGGGTGATGGATAAACATAAAGGCCATGATACAGTGTCAGCTGCAACAGAGAGGACTGAGATACAGAGTCAGCTGGGGATGAGTCAGCAGAatgtccaggagagagagaaggtgctgAAGGAGATCCAACAGGCTGTGGAGTCTCTTAAGCGTTCTGCAAATGCAGCAGTGGATGACAGTGAGAGGATCTTTACTGAACTGATCCGCTCCATGGAGGAAAGGCGCTCTgaggtgaaggagctgatcaGAGCTCAGGAGAAGGCTGAAGTGAGTCGTGCTGAAGGTCTACTTGAGCCACTGAAACAGGAGATAGTTGAGTTGAGGAGGAGAGATGCTGAGCTGGAgaaactctcacacacagaggatcacatCCATTTCCTTCAGagtTATCAATCTCTCTCCAGTCCCAGTGTATCTTCAGACTTGCCCAGCATCATTGTCTGTCCTCTTCAGTACTTTGGAGATGTGAATAAGTCCGTGTCTGAGCTGAGAGTGAAAGTAGAAGACCTCCTTAAAGGAGAATGGACCAAGATCTCCACTACAGggaTAGCATGTCATAACAACCACAGCTCCCAGACGAAAGCTGCTCTGCAGCAAGACGACCCCATGGAGGACAAGGACAGGGGTCAGGAGGTCAAACGCCGCGAGATCCCTGTTGGAAACTTGGTCGACGTTGACAACACTCCGGTCGCCAAATCACTGCacggagacagtgagagagaaagggatggagaaaggaagaaagaggaagaaagacagaaacATAAGGAAATGGAAAGTGAGAAAAAGAGGGATGGCGGGAGGGAAGTTGAAATGGATGGAGcaagggtaggagagagggatggaacaactgaaagagagatggagggggtgagggaagaagCGATGGATATAGGGTGGGAAAGCAAGAGGGATGGAACAAGAggagtgaggggtgaggaggagaagaggtcgTGCTGCTATCTCTCTCAGCTGAAGAAAGTCCCTGAGTGTCACAAGGAGCTGGAGCCACTGTCCTTCAGCAGAACTCACAACGTCCTCATAGATGTGAATGAGTTCCACCATAAAAGGACATTGAAACCTCATTTTGGACGTCATGTGTGGCACAGTGACTTTGTTAAGATGCCCTGCTCACCAGAAAGCCTCATGAAGACTGGATGGGTAACCAGCTCTGAGCGAAGTCGGTGGGAGGTGGTCTCTAAACAGCTGGAGAGTCTGGCCAAGAAGACCACTGCATCAGTGGGTGACGTAGagAAAGCCATAAAGAAATACAACCCAAAATATGAAGATCAATGGTCCTTTGATGCCCTGCATACCTTTGTTAAGaaaTCACCCAAAGAAGAGAAATACTACACGTCTGTTTTTCCTAAGATAGCAGAGCTGGCCTCCAGCCTGCCTCGCTATATCAAGAAGgctatccCTCTACTCAAGAAGGGCCAGACTCAGGCCATCACGTTGTCCCAGAGTCAGATAGCTTGTCTGCTGGCCAACGCCTTCTACTGCACCTTCCCCCACCGCAACTCTCCCAACCCCAGAGCAGAGTACCACAACTACCCCACCATCAACTTTAACAGtCTGTTTGAAAAGTGgtctgagaggaagagagagaagctgAGAGCCCTCCTTCATTACTTCCACACTGTCACAGACCCAGCGACCAGGCCCTGTGGACTGGTGACCTTTGAGAGGCGCTacatcagagacagagacatgcccAACTGggggagttGTAAGGAGACTGTTCCTAAACTCCACGTCACCTCAGCAGGCTGCATAGAGGAACAGGGAGCAGGGATGTTACAGgtggACTTTGGCTGTAACATGATAGGAGATGGAGTGTTGGGCTCAGGCCTGGAGGCGATTCTGTTCCTGATGAACCCTGAACTCATCGTATCTCGACTTTTCACTGAAAAACTAGGAGACAATGAGTGTCTTTTcatcacaggtTCTCAACAGTTCAGTCAGTACAGTGGCTACAGTGACACTTTTACGTGGGAAGGGCCTCACAGAGACGACAttgagagGGATGAGTGGCAGAGGCTACACAGACAGATTGTGGCCATGGATGCTCTCCACTTCAGACACCTGAGAGAACAGTACAACATGAAACAGGTCACCAGGGAACTCAACAAGGCGTACTGTGGCTTTAATGCAGATGACAACACTTACCCAGACTTCCTTCCTGACATCGCCACAGGAAACTGGGGCTGCGGAGCCTTCAATGGAGACCCCAAACTTAAAGCTCTGGTCCAGCTGATGGCTGCAGCCAGGGCTAAGAGGGGCGTGGCCTTCTTCACATTCAATAACTTCATCTTGGAGAGAGAGCTGCAGGACATGCACCACCTACTGGTCACACACAGAACTACAGTGGgTGAGCTGTATGAGTTGCTGGTTGACTACTGTGCTGTGATACAGTTGGCTCACACACATGCGGACCTGTTTGACTGGATCAGGAATACCCTGAAACACAGGAGTCAGCTGTGAGGACACATCTACATACTCTAAAGgagcttcctttccttgtctcctttcctttttTAACattattgagatgcaccccagaGATAGAGTGGCTCTATGAATGATCTGTGGATAGAAACATGGTACAGTTCCAAGTAATGGTTGATTATGAATGTGTTAGTCTTTTCAATAGTTACACTGTTCCTAAATCAAACTGATACATTTGTAACTACTGCATACTGAACTATTTAGAAAATGACTAAATGTGATGATAAAACGAAGCTAATGAAATGATGTCAACAAAATCAGGGTTCCTGCTTTTTGATTTCTCCCTTGGTCATAGCCAACAACTTCACAAAACACTGGAAATATGCACataacaggaggttggtggcaccttcattttggagaacgggctcgtggtcaTGGCTAGAGTGGAATCAGTGgattggtatcaaatacatcaaacatatggtttctatgtgtttgatgccattccaattTCTCCTtcccggccattattatgagcagttctcctctcagcagcctgcTGTGATGCACAAGAAGTGTACTGTAAAATACtctagaattattattatttttaaatgattAATAAATTCCTCTTTATAATCCA

Function

NR:

description
uncharacterized protein LOC110523317

GO: NA

KEGG:

id description
K07759 PARG; poly(ADP-ribose) glycohydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976901.1 True 3688 mRNA 0.48 19 15872778 15895178

Neighbor

gene id symbol gene type direction distance location
c5h9orf78 cssa01h9orf78 coding downstream 57976 15810578 ~ 15814802 (-)
LOC118964750 NA coding downstream 77241 15795463 ~ 15795537 (-)
LOC118964755 NA coding downstream 77569 15795141 ~ 15795209 (-)
LOC118964756 NA coding downstream 77971 15794739 ~ 15794807 (-)
LOC118964747 NA coding downstream 78363 15794344 ~ 15794415 (-)
LOC118964569 LOC106594099 coding upstream 3499 15898677 ~ 15899294 (-)
LOC110523317 LOC106568982 coding upstream 7038 15902216 ~ 15926643 (-)
garnl3 LOC106562762 coding upstream 43773 15938951 ~ 16121310 (-)
LOC118964745 NA coding upstream 308512 16203690 ~ 16205002 (-)
si:dkey-34e4.1 LOC106569177 coding upstream 323136 16218314 ~ 16410253 (-)
G372093 NA non-coding downstream 2898 15869563 ~ 15869880 (-)
G372087 NA non-coding downstream 12300 15860270 ~ 15860478 (-)
G372085 ptges non-coding downstream 14425 15855720 ~ 15858353 (-)
G372077 NA non-coding downstream 27513 15843200 ~ 15845265 (-)
G372074 NA non-coding downstream 31647 15840903 ~ 15841131 (-)
G372102 NA non-coding upstream 21372 15916550 ~ 15917045 (-)
G372113 NA non-coding upstream 44553 15939731 ~ 15940557 (-)
G372115 NA non-coding upstream 57424 15952602 ~ 15957597 (-)
G372130 NA non-coding upstream 95472 15990650 ~ 15995471 (-)
G372139 NA non-coding upstream 114110 16009288 ~ 16009780 (-)
LOC110523302 NA other downstream 174449 15693396 ~ 15707607 (-)
G371294 LOC106569911 other downstream 747989 15123475 ~ 15124789 (-)
LOC110524957 LOC106569957 other downstream 877619 14988147 ~ 14995197 (-)
G370635 NA other downstream 1444187 14427338 ~ 14428591 (-)
G370333 NA other downstream 1664073 14207190 ~ 14208705 (-)
G372122 NA other upstream 80428 15975606 ~ 15976116 (-)
G372123 NA other upstream 83324 15978502 ~ 15981215 (-)
LOC110523341 LOC106569324 other upstream 1039057 16909582 ~ 16942359 (-)
G373228 LOC106569424 other upstream 1228859 17124037 ~ 17125807 (-)
LOC110523354 LOC106569496 other upstream 1593848 17483696 ~ 17521507 (-)

Expression


Co-expression Network