LOC110522841 (LOC106569125)


Basic Information

Item Value
gene id LOC110522841
gene name LOC106569125
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 16427503 ~ 16430780 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601311.2
ATGATGTTTAAGTAAAGTCATTGTCTTTGGTGCTTTggtccttcacacacacacatttgtgcacaggtactatataacacacagacacaagctcACACATGGTTTCtcgtctctccttctccctcctcctcatcttctccagACTCTCAGGAACGGACGGGATTAGGTTGATGTCTGTGTGGACAGGAGACTCCATCGACATCCCATGTATCTATCATCAGGATTACCTAAACTATGTAAAATACTGGTGTAAAGGGGATTCCTGGACTACATGCTCTTATGTGGTACGCACTGACCATCCCAATAGCAGTGGTAAAACCTCAATATCTGATGCCGTCAATCTGAGAACCTTTACCGTGACTATGAAAAGTCTAGAACAAAGTGATTCTGATATTTACTGGTGTGTAGTGGAGAAGAACGGACCAGATGAATGGCTAGAATTGTTCAAACTAGTCATTACAGACAGTCCTATTGTTGACCAAGAGGAGACTGGAATTGAGGGGGGTAGTGTTTTTACATCAATACCAACTATTCAAGAGATGTTTGCAGTTCAAACCACAACACAGTTTACCACCACCATCACAATGCCAATGCCAACTACCCAAGAGCTCTCAGTTATGACGGGAGAATTTGAACTCTCCTCTTCCACCTCGCAGGCctcagtcaacaacacacaccatGGAGCCCAGCGATGGGAGCGAACATTATTCTACCTGCCGAAAACTGTTAATGCAGTGGTCTTCCTCTTGTGCACCATCATGGCTGTGGTGAAGCATAGGACAAACCGACTCCGAGGTCAAACTGAGGATGAGTAGAAACCTCTGAGGTGCCGCTTGGAGTATCACTTCACACACCACTGTGGACACACTCTCACATTCACTCACTATGGAAAagttattcaatgtgtttaacagacatctcaagtgtgtgtatatgtatatgtttcATGGTTAGCCTATGTGTACTTGTAAAATGGAACTCATGATGACCAAAGTGTTGTTGACAGATAGTTATTAAGTTGATTCATAGTTGATATTTGGTCATTTTGCATCGTAGGGATATTttaaagttacatatcttgaaacttgattgctgacaagcaaaacattttgggacgatgtcaacaatggactaatgaaacaaataccaaaagacagttttttgggtggagttttcctttaacaaATCCTCTCCCTTGAATCAGAGCCTTGGAATACCATTCTGTCTATGTTCTCCAGCTTTATAAATGGAATATGAATGCTTTGCTAATAAACCAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K20395 CD300B_D_F; CO300B/D/F antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601311.2 True 1277 mRNA 0.42 5 16427503 16430780

Neighbor

gene id symbol gene type direction distance location
LOC110523325 LOC106569195 coding downstream 5481 16416981 ~ 16422022 (-)
si:dkey-34e4.1 LOC106569177 coding downstream 17250 16218314 ~ 16410253 (-)
LOC118964745 NA coding downstream 222501 16203690 ~ 16205002 (-)
garnl3 LOC106562762 coding downstream 306193 15938951 ~ 16121310 (-)
LOC110523317 LOC106568982 coding downstream 500860 15902216 ~ 15926643 (-)
ppiab ppia1 coding upstream 43310 16474090 ~ 16479578 (-)
LOC118964764 NA coding upstream 44417 16475197 ~ 16475278 (-)
LOC118964765 NA coding upstream 44997 16475777 ~ 16475856 (-)
LOC118964763 NA coding upstream 45899 16476679 ~ 16476760 (-)
zmiz2 zmiz2 coding upstream 49368 16480148 ~ 16516827 (-)
G372773 NA non-coding downstream 62653 16364644 ~ 16364850 (-)
G372772 NA non-coding downstream 63409 16363875 ~ 16364094 (-)
G372761 NA non-coding downstream 84354 16342844 ~ 16343149 (-)
G372760 NA non-coding downstream 85799 16341502 ~ 16341704 (-)
G372758 NA non-coding downstream 87384 16339767 ~ 16340119 (-)
G372816 NA non-coding upstream 5232 16436012 ~ 16437300 (-)
G372876 NA non-coding upstream 148299 16579079 ~ 16579741 (-)
G372892 NA non-coding upstream 193315 16624095 ~ 16624702 (-)
G372901 NA non-coding upstream 214449 16645229 ~ 16646216 (-)
G372909 NA non-coding upstream 232865 16663645 ~ 16664178 (-)
G372123 NA other downstream 446288 15978502 ~ 15981215 (-)
G372122 NA other downstream 451387 15975606 ~ 15976116 (-)
LOC110523302 NA other downstream 729174 15693396 ~ 15707607 (-)
G371294 LOC106569911 other downstream 1302714 15123475 ~ 15124789 (-)
LOC110524957 LOC106569957 other downstream 1432344 14988147 ~ 14995197 (-)
LOC110523341 LOC106569324 other upstream 503455 16909582 ~ 16942359 (-)
G373228 LOC106569424 other upstream 693257 17124037 ~ 17125807 (-)
LOC110523354 LOC106569496 other upstream 1058246 17483696 ~ 17521507 (-)
G374189 NA other upstream 1572040 18002820 ~ 18003170 (-)
G374786 NA other upstream 2127360 18558140 ~ 18559167 (-)

Expression


Co-expression Network