LOC110523327 (LOC105015301)


Basic Information

Item Value
gene id LOC110523327
gene name LOC105015301
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 16454595 ~ 16470342 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601922.2
ggaaggagagaggaggcaagGAAAAGGAATTGTTTCCAATCCTCGCATTCATCAACATTAGCAGCAATTGTAGCTGTAACGGTAATGATGTGTATGACGATACCAAGGCAGGACTTGTGTCCTTAGGATAATAACGACAGATGTATAACAATCAAGCCAAATTGTCTACAGATGCAACCCAGCACAGATGTGagggccagagagagagagagagagaaagaaaaagacagagagagaatagtccAGATGTGAGATGTGACGCGCTGGCGGACGAGCCAGACACGACGATCCAGTGTTATTGATGAAGAATAGAAAATGTTCTACCATCGAGGGAAAGTCTGCGCTGTTGATGGGCTTTCTAATTTATAACGggtgtatgtgtgtgtctggttaACCGTCAGAGGTGAAAGATCAGAGGTCACAGCAAGTCGGAGGcaagaggtcaggggtcatgtCTACAGTGGCATTCCAGAACCTTCCTCTCAACATTTATATGGTCATCTTCGGGACCGGAGTCTTCGTTTTTGTCCTGAGCCTCATCTTCTGCTGCTACTTCATTAGtaAACTGAGGCACCAGGCCCAACGAGAGAGGTTTGGATATAAAGCGGTGGTGTTCAAAGGGGATACAAAGAAACTCAATCTACACGGGCAGACATGTGCGGTCTGCTTGGAGGACTTCAGAGTGAAAGATGAGCTAGGAGTGTTGCCATGCCAACATGCCTTTCACCGGAGATGCCTGGTGAAGTGGCTGGAGGTGCGCTGTGTGTGTCCCATGTGTAACAGGCACATCGCTGGGCCACCTGAACAACGCCACAGCCTGGGCACACTGCTGGATGAACTGGTGTAGTGGGATGCTATGGCGATACAGCTGGAAATGAGTGGTGTAGCAAGTTGATATGACGATGCAGCTGGAAAGGACTAGTGTAGGATGTTGCTATGGTGGTACGACCGGAACAGACTGGTTTAGAGGTCCCGGTACGGACTATACATTGCTGAAGCAAAATGACCTGACAATCTATTATTAGGGACCAGTGACGAAACCACATGACACCATAACTATAGGGAAACAGATCTTCAGACTTCACACCCTCATGTATTGATAAGGAGATGGGACAcacgggcggcaggtagcccatcAGTTACAGCTTTGGGCCAGGTTGCttgtttgaatccccgagctgaccaaGGTGTaaatctgtcgacgtgcccttgaaAAAGGAGCAACCCTAATTACTCCagggttgctgttgataatggcagaccctggctgtgaccccactctctgggGGTGTCCCAGGGAGAGTTGGGATCTgcaaaaaacaaatgaaatatgacaaatataagcacccaccaaattattaccattatgggtactgtagtatGTCATGCTACACCTTATCATGTAGAATCAGTCATTTAATGACTGAATGCCGAGCCTCTACAATACGCACTCCACCAGCATGCCCACTTTTAAACAGACTTCTTCATGAAGAACAGATTCACAAAGCCACAAAATCTGGGACAAAAACTCTGCTCTCAACCCTGTCACTGTCTGGAAGAGGGGCTACCTGTGAAAAGAGAGCTTGAGAACTCAAGGGATGTATTGCTGAATGCCCAGATAGAAATATATGATGTAGAACAGACATGCCTTTCTGAAATCTGGAGTGAGGAATTGTGTCAGCTCTGTTCATGGCATATCTATCTGCAATGTCCAGTATGTTACAGCCTGGGGATGATGACATACAGGTATCAATATTgtgatacatttttttctgactgtgtcacatgtctgtctgtctgtcaggtctgtgtgtgtgtctgtgtgtcaggtcTGCATCCTGCTTATATTAAGTGGGTGTGACATATTATGTTATGAACTGTAGGAGGGACCAACAACTTTTTTTATCCTGACTAGTATTTCCTTGCCAAACAAGCCTTTCCAGTTAATTATATTTAAAGTGAAGGGAGATTTGGAACAATTCCTTTCTGTCTGGGGACGTGTCTGAAGCACAGGCACTGCCCAATGGCAAAGTAAACATTCCCCATGTGTACAATATCTGCTTTTGTAAATATCTGAAAATACAACGTGTCCTGTTTTGATCTATGTC
>XM_021601924.2
ggaaggagagaggaggcaagGAAAAGGAATTGTTTCCAATCCTCGCATTCATCAACATTAGCAGCAATTGTAGCTGTAACGGTAATGATGTGTATGACGATACCAAGGCAGGACTTGTGTCCTTAGGATAATAACGACAGATGTATAACAATCAAGCCAAATTGTCTACAGATGCAACCCAGCACAGATGTGggtgtatgtgtgtgtctggttaACCGTCAGAGGTGAAAGATCAGAGGTCACAGCAAGTCGGAGGcaagaggtcaggggtcatgtCTACAGTGGCATTCCAGAACCTTCCTCTCAACATTTATATGGTCATCTTCGGGACCGGAGTCTTCGTTTTTGTCCTGAGCCTCATCTTCTGCTGCTACTTCATTAGtaAACTGAGGCACCAGGCCCAACGAGAGAGGTTTGGATATAAAGCGGTGGTGTTCAAAGGGGATACAAAGAAACTCAATCTACACGGGCAGACATGTGCGGTCTGCTTGGAGGACTTCAGAGTGAAAGATGAGCTAGGAGTGTTGCCATGCCAACATGCCTTTCACCGGAGATGCCTGGTGAAGTGGCTGGAGGTGCGCTGTGTGTGTCCCATGTGTAACAGGCACATCGCTGGGCCACCTGAACAACGCCACAGCCTGGGCACACTGCTGGATGAACTGGTGTAGTGGGATGCTATGGCGATACAGCTGGAAATGAGTGGTGTAGCAAGTTGATATGACGATGCAGCTGGAAAGGACTAGTGTAGGATGTTGCTATGGTGGTACGACCGGAACAGACTGGTTTAGAGGTCCCGGTACGGACTATACATTGCTGAAGCAAAATGACCTGACAATCTATTATTAGGGACCAGTGACGAAACCACATGACACCATAACTATAGGGAAACAGATCTTCAGACTTCACACCCTCATGTATTGATAAGGAGATGGGACAcacgggcggcaggtagcccatcAGTTACAGCTTTGGGCCAGGTTGCttgtttgaatccccgagctgaccaaGGTGTaaatctgtcgacgtgcccttgaaAAAGGAGCAACCCTAATTACTCCagggttgctgttgataatggcagaccctggctgtgaccccactctctgggGGTGTCCCAGGGAGAGTTGGGATCTgcaaaaaacaaatgaaatatgacaaatataagcacccaccaaattattaccattatgggtactgtagtatGTCATGCTACACCTTATCATGTAGAATCAGTCATTTAATGACTGAATGCCGAGCCTCTACAATACGCACTCCACCAGCATGCCCACTTTTAAACAGACTTCTTCATGAAGAACAGATTCACAAAGCCACAAAATCTGGGACAAAAACTCTGCTCTCAACCCTGTCACTGTCTGGAAGAGGGGCTACCTGTGAAAAGAGAGCTTGAGAACTCAAGGGATGTATTGCTGAATGCCCAGATAGAAATATATGATGTAGAACAGACATGCCTTTCTGAAATCTGGAGTGAGGAATTGTGTCAGCTCTGTTCATGGCATATCTATCTGCAATGTCCAGTATGTTACAGCCTGGGGATGATGACATACAGGTATCAATATTgtgatacatttttttctgactgtgtcacatgtctgtctgtctgtcaggtctgtgtgtgtgtctgtgtgtcaggtcTGCATCCTGCTTATATTAAGTGGGTGTGACATATTATGTTATGAACTGTAGGAGGGACCAACAACTTTTTTTATCCTGACTAGTATTTCCTTGCCAAACAAGCCTTTCCAGTTAATTATATTTAAAGTGAAGGGAGATTTGGAACAATTCCTTTCTGTCTGGGGACGTGTCTGAAGCACAGGCACTGCCCAATGGCAAAGTAAACATTCCCCATGTGTACAATATCTGCTTTTGTAAATATCTGAAAATACAACGTGTCCTGTTTTGATCTATGTC
>XM_021601925.2
ACACATCACTCATCACTTGCCTGTCAACTTTTTTTCGAAATCTTTTTTTGTCTCACATTTAATACCTCATGGCAAGCCACTTGCACAAACGtaagttcaacatctagtttcgATTTACATTTgcttgagttgtcaactaacgtgaattgaACGTGAAATCAACGGGAGAAAATAAATTCCCTTACGTTGTTGGCGTTTTGCAAAccttgaaatgacgtggaaaccacGTTGATTCATCCAGTTGTTGCCCAGTGGGAAGATTCTTTTTTTTAATCGTTTGTCTTTTTGGGGTGGGACATTGTAaaagagggccagagagagagagagagagaaagaaaaagacagagagagaatagtccAGATGTGAGATGTGACGCGCTGGCGGACGAGCCAGACACGACGATCCAGTGTTATTGATGAAGAATAGAAAATGTTCTACCATCGAGGGAAAGTCTGCGCTGTTGATGGGCTTTCTAATTTATAACGggtgtatgtgtgtgtctggttaACCGTCAGAGGTGAAAGATCAGAGGTCACAGCAAGTCGGAGGcaagaggtcaggggtcatgtCTACAGTGGCATTCCAGAACCTTCCTCTCAACATTTATATGGTCATCTTCGGGACCGGAGTCTTCGTTTTTGTCCTGAGCCTCATCTTCTGCTGCTACTTCATTAGtaAACTGAGGCACCAGGCCCAACGAGAGAGGTTTGGATATAAAGCGGTGGTGTTCAAAGGGGATACAAAGAAACTCAATCTACACGGGACATGTGCGGTCTGCTTGGAGGACTTCAGAGTGAAAGATGAGCTAGGAGTGTTGCCATGCCAACATGCCTTTCACCGGAGATGCCTGGTGAAGTGGCTGGAGGTGCGCTGTGTGTGTCCCATGTGTAACAGGCACATCGCTGGGCCACCTGAACAACGCCACAGCCTGGGCACACTGCTGGATGAACTGGTGTAGTGGGATGCTATGGCGATACAGCTGGAAATGAGTGGTGTAGCAAGTTGATATGACGATGCAGCTGGAAAGGACTAGTGTAGGATGTTGCTATGGTGGTACGACCGGAACAGACTGGTTTAGAGGTCCCGGTACGGACTATACATTGCTGAAGCAAAATGACCTGACAATCTATTATTAGGGACCAGTGACGAAACCACATGACACCATAACTATAGGGAAACAGATCTTCAGACTTCACACCCTCATGTATTGATAAGGAGATGGGACAcacgggcggcaggtagcccatcAGTTACAGCTTTGGGCCAGGTTGCttgtttgaatccccgagctgaccaaGGTGTaaatctgtcgacgtgcccttgaaAAAGGAGCAACCCTAATTACTCCagggttgctgttgataatggcagaccctggctgtgaccccactctctgggGGTGTCCCAGGGAGAGTTGGGATCTgcaaaaaacaaatgaaatatgacaaatataagcacccaccaaattattaccattatgggtactgtagtatGTCATGCTACACCTTATCATGTAGAATCAGTCATTTAATGACTGAATGCCGAGCCTCTACAATACGCACTCCACCAGCATGCCCACTTTTAAACAGACTTCTTCATGAAGAACAGATTCACAAAGCCACAAAATCTGGGACAAAAACTCTGCTCTCAACCCTGTCACTGTCTGGAAGAGGGGCTACCTGTGAAAAGAGAGCTTGAGAACTCAAGGGATGTATTGCTGAATGCCCAGATAGAAATATATGATGTAGAACAGACATGCCTTTCTGAAATCTGGAGTGAGGAATTGTGTCAGCTCTGTTCATGGCATATCTATCTGCAATGTCCAGTATGTTACAGCCTGGGGATGATGACATACAGGTATCAATATTgtgatacatttttttctgactgtgtcacatgtctgtctgtctgtcaggtctgtgtgtgtgtctgtgtgtcaggtcTGCATCCTGCTTATATTAAGTGGGTGTGACATATTATGTTATGAACTGTAGGAGGGACCAACAACTTTTTTTATCCTGACTAGTATTTCCTTGCCAAACAAGCCTTTCCAGTTAATTATATTTAAAGTGAAGGGAGATTTGGAACAATTCCTTTCTGTCTGGGGACGTGTCTGAAGCACAGGCACTGCCCAATGGCAAAGTAAACATTCCCCATGTGTACAATATCTGCTTTTGTAAATATCTGAAAATACAACGTGTCCTGTTTTGATCTATGTC
>XM_021601921.2
ACATCACTCATCACTTGCCTGTCAACTTTTTTTCGAAATCTTTTTTTGTCTCACATTTAATACCTCATGGCAAGCCACTTGCACAAACGtaagttcaacatctagtttcgATTTACATTTgcttgagttgtcaactaacgtgaattgaACGTGAAATCAACGGGAGAAAATAAATTCCCTTACGTTGTTGGCGTTTTGCAAAccttgaaatgacgtggaaaccacGTTGATTCATCCAGTTGTTGCCCAGTGGGAAGATTCTTTTTTTTAATCGTTTGTCTTTTTGGGGTGGGACATTGTAaaagagggccagagagagagagagagagaaagaaaaagacagagagagaatagtccAGATGTGAGATGTGACGCGCTGGCGGACGAGCCAGACACGACGATCCAGTGTTATTGATGAAGAATAGAAAATGTTCTACCATCGAGGGAAAGTCTGCGCTGTTGATGGGCTTTCTAATTTATAACGggtgtatgtgtgtgtctggttaACCGTCAGAGGTGAAAGATCAGAGGTCACAGCAAGTCGGAGGcaagaggtcaggggtcatgtCTACAGTGGCATTCCAGAACCTTCCTCTCAACATTTATATGGTCATCTTCGGGACCGGAGTCTTCGTTTTTGTCCTGAGCCTCATCTTCTGCTGCTACTTCATTAGtaAACTGAGGCACCAGGCCCAACGAGAGAGGTTTGGATATAAAGCGGTGGTGTTCAAAGGGGATACAAAGAAACTCAATCTACACGGGCAGACATGTGCGGTCTGCTTGGAGGACTTCAGAGTGAAAGATGAGCTAGGAGTGTTGCCATGCCAACATGCCTTTCACCGGAGATGCCTGGTGAAGTGGCTGGAGGTGCGCTGTGTGTGTCCCATGTGTAACAGGCACATCGCTGGGCCACCTGAACAACGCCACAGCCTGGGCACACTGCTGGATGAACTGGTGTAGTGGGATGCTATGGCGATACAGCTGGAAATGAGTGGTGTAGCAAGTTGATATGACGATGCAGCTGGAAAGGACTAGTGTAGGATGTTGCTATGGTGGTACGACCGGAACAGACTGGTTTAGAGGTCCCGGTACGGACTATACATTGCTGAAGCAAAATGACCTGACAATCTATTATTAGGGACCAGTGACGAAACCACATGACACCATAACTATAGGGAAACAGATCTTCAGACTTCACACCCTCATGTATTGATAAGGAGATGGGACAcacgggcggcaggtagcccatcAGTTACAGCTTTGGGCCAGGTTGCttgtttgaatccccgagctgaccaaGGTGTaaatctgtcgacgtgcccttgaaAAAGGAGCAACCCTAATTACTCCagggttgctgttgataatggcagaccctggctgtgaccccactctctgggGGTGTCCCAGGGAGAGTTGGGATCTgcaaaaaacaaatgaaatatgacaaatataagcacccaccaaattattaccattatgggtactgtagtatGTCATGCTACACCTTATCATGTAGAATCAGTCATTTAATGACTGAATGCCGAGCCTCTACAATACGCACTCCACCAGCATGCCCACTTTTAAACAGACTTCTTCATGAAGAACAGATTCACAAAGCCACAAAATCTGGGACAAAAACTCTGCTCTCAACCCTGTCACTGTCTGGAAGAGGGGCTACCTGTGAAAAGAGAGCTTGAGAACTCAAGGGATGTATTGCTGAATGCCCAGATAGAAATATATGATGTAGAACAGACATGCCTTTCTGAAATCTGGAGTGAGGAATTGTGTCAGCTCTGTTCATGGCATATCTATCTGCAATGTCCAGTATGTTACAGCCTGGGGATGATGACATACAGGTATCAATATTgtgatacatttttttctgactgtgtcacatgtctgtctgtctgtcaggtctgtgtgtgtgtctgtgtgtcaggtcTGCATCCTGCTTATATTAAGTGGGTGTGACATATTATGTTATGAACTGTAGGAGGGACCAACAACTTTTTTTATCCTGACTAGTATTTCCTTGCCAAACAAGCCTTTCCAGTTAATTATATTTAAAGTGAAGGGAGATTTGGAACAATTCCTTTCTGTCTGGGGACGTGTCTGAAGCACAGGCACTGCCCAATGGCAAAGTAAACATTCCCCATGTGTACAATATCTGCTTTTGTAAATATCTGAAAATACAACGTGTCCTGTTTTGATCTATGTC

Function

NR:

description
RING finger protein 122-like isoform X1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601922.2 False 2108 mRNA 0.46 7 16454595 16470342
XM_021601924.2 False 1929 mRNA 0.46 6 16454595 16470342
XM_021601925.2 False 2220 mRNA 0.45 6 16454799 16470342
XM_021601921.2 True 2221 mRNA 0.45 6 16454801 16470342

Neighbor

gene id symbol gene type direction distance location
LOC110523326 dusp26 coding upstream 16863 16434263 ~ 16437732 (+)
ptges ptges coding upstream 596235 15852569 ~ 15858360 (+)
usp20 LOC106569850 coding upstream 615136 15816800 ~ 15839459 (+)
LOC118964570 NA coding upstream 622854 15829533 ~ 15831741 (+)
med22 med22 coding upstream 644093 15796177 ~ 15810502 (+)
pargl LOC106569224 coding downstream 46458 16516800 ~ 16557705 (+)
LOC110523336 NA coding downstream 220563 16690905 ~ 16694551 (+)
polm LOC106569276 coding downstream 241840 16712182 ~ 16726009 (+)
ved LOC106569620 coding downstream 262294 16732636 ~ 16735129 (+)
purbb LOC106562912 coding downstream 271011 16741353 ~ 16744067 (+)
G372345 NA non-coding upstream 99283 16355092 ~ 16355312 (+)
G372342 NA non-coding upstream 101355 16353024 ~ 16353240 (+)
G372333 NA non-coding upstream 119042 16335185 ~ 16335553 (+)
G372331 NA non-coding upstream 123248 16331091 ~ 16331347 (+)
G372329 NA non-coding upstream 124937 16329408 ~ 16329658 (+)
G372374 NA non-coding downstream 6184 16476526 ~ 16479402 (+)
G372381 NA non-coding downstream 88314 16558656 ~ 16559057 (+)
G372480 NA non-coding downstream 102502 16572844 ~ 16573465 (+)
G372505 NA non-coding downstream 136990 16607332 ~ 16607737 (+)
G372506 NA non-coding downstream 139160 16609502 ~ 16609777 (+)
G372281 LOC106569177 other upstream 233662 16218328 ~ 16220933 (+)
G371615 LOC100194725 other upstream 659473 15791559 ~ 15795122 (+)
G371182 NA other upstream 1325778 15124290 ~ 15128817 (+)
LOC110519479 LOC106596183 other upstream 1401039 15047739 ~ 15054353 (+)
LOC118964542 LOC106569496 other upstream 1649124 14798616 ~ 14805526 (+)
G372373 NA other downstream 265300 16735642 ~ 16738500 (+)
G372618 LOC105030512 other downstream 400092 16870434 ~ 16882185 (+)
G373726 NA other downstream 1233771 17704113 ~ 17707757 (+)
arhgef28a LOC106568988 other downstream 1597101 18067350 ~ 18177035 (+)
G376320 NA other downstream 3512919 19983261 ~ 19983848 (+)

Expression


Co-expression Network