LOC110523336


Basic Information

Item Value
gene id LOC110523336
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 16690905 ~ 16694551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051667.1
TTCCCACAAACCCTTTCATCAGTCAAAATGTCTGCTTCCTTGAGTTGTCAGAGTGTGATATCGGTGACAAACATGTTGACATTAGTTCAATAACTGTTTGAGATTATTCTACTTTAAAAAGTGTTGTGATATATTCTAACCATGACCAGTTATTTTGATACGTGGGCGAGGCTTTGACAAACAGCGTGTTTCTGGCTAGCCAATTATATAGCAGCCAATGTTACTTGGCAGTTGCTCTCGTCTTTGTTTTCACACCTTTGCCCCACAGAACGCGCTTGCCAGAGTCGGCACTTCGATATACAATAACTCTGCAACACGAGCACTTCATGTCACTGCAGCATGCTGCAAGAATCGCTTGTATTCGGGTGGGGAAAGGAGACCGACCACTAACCTATGAGCAAGCACTCCACCCCCACCACATAGGACACCGCAAGGGCTGGCTCTCCCAGCACACTAGTaacctacagggagagggaggagcatcAGATCGTACTGTGGAAGACGACGTTTGTACGACGTTTCCTCTTCGGGAACTTTCAATAACTGCCTGGCCAATGAGATTGTGATAAAGCGACGAGGCAACATGCTGGTGGGGTGTACCCTGATGCTGCAGAAATTCCCTTCACAGAAGTTCTACTTCCTGATTGGCTACACGGAGACACTGCTCTCACTTCTACAAGTGTCCTGTTAAGATGGAGGTACAGACCCTGGAGGATAAGGCTGTCTACAAGTACCTCAGACAGGAATTGCTAACAGATTTGACTTTCAAGACTTGTCATACAGGACTATTTTGGGGAAACTCACCACCGTAcagttgtaaaaaataaatggtaTTTGAATGAGTCTATTCATCTCTATCTACAGTGTGTGGAAACCAACTATTGAGTGTGTGCCTTGGAGTTGGCTCTTCACAGTAGGAATAGACAGACTACCAGATAGTGTTATCTTCAGGTTAACAGCAGTACACCTGTGTATTCAGTCAGGTGAAACGTCAACTGGGTGAAAATAAATCTAATGTATACAAGTGACACGCGTCTATCCTACACGGCAGACAATCTGTTCCAACATAGTACATTttaaggagaaggaaggagaaaggTAGGAAAGCGTGTCACAAATAGGCATTGTGTCAGATTCAAACCCACGTAGTTAGTGGTAGGTATGTGCTCCATAGGTGCTGGTATTGACAGCCAGACCTTACATTTTCCAGAGCATTCTGTAACACATTGCACCCTCCTGAACAGGCCCCATTGTTTTTCCCATCTCCTCTTTGAATTGGATTCCATTCCAGTCTAGAACTATTCACTACTTGTAAATCATGTGTTGGAGTTAAATGGACTTATGAAAAACTCAGTGGAATGCTTTTTCGTTTATTGATTTCTCATGACGCGGTCACATTGAACAAAGCATTAAAAAGCTGCTTCAGTGCAAAAAGACAAGGCACACAGATTACATCATCTTCGTCCATATCAAAGGTTAGAGTATGAACAATTCCCTTAAATATCAGTGATATATTCCTGTCTGTAAGGCCACATTGATTTTTCAAAACAATTAAAACGATTCCACACGAATAACATTTGTCTGATCTACATCTAGGAAAATGTCCCTCTTGATTTATTTTGGAAAAAAAGGGTCTCATGGCTATAATGGTTAATACTCAGACTGTATCACTCATTGTAGAACATTTTGTTTACACAGACAGTAAACTTCACATTCTCAGACACCTTGCCTGTGTCCCAATCTGTTCTTTCttctaaagtgtgcacttgtacaCTCCTTCCCATACATTTAATACCATTGGATCAGTATAGACATGGACTAAAGGGAGTTAATGTCTTATAATACCAGTAATTTACTTTGAAATCCACGAAGTCAACAAGTGCACACTAAATGGAAGAAAGTACAGCTTATTGTGAGGCAGGTTGGGAGGCACACAAACAGCAAAGATAGGACAAATACCACTTGTCCTCTGGGCTCACATTCTGAAGGAACAGGCTCGTTCAGTTTTCCCTTCTTTCACCTCTCTTTCCCTGGAAAAGTGCTCATAGACTAAAATGTAAAACACAGCTCTCGTCTTccttatgctccatacatacagcGAGTGGCAAACAGGGAAATCATTCCATTGGGCGAGAAGTAGCCACTTCGCCACCCACAGTGTGAACAAGACCATAAAGCAAGGGGAAAGGCAGGTTGGCTAAATGGGATTGATGGT
>TU423248
TGTGATATCGGTGACAAACATGTTGACATTAGTTCAATAACTGTTTGAGATTATTCTACTTTAAAAAGTGTTGTGATATATTCTAACCATGACCAGTTATTTTGATACGTGGGCGAGGCTTTGACAAACAGCGTGTTTCTGGCTAGCCAATTATATAGCAGCCAATGTTACTTGGCAGTTGCTCTCGTCTTTGTTTTCACACCTTTGCCCCACAGAACGCGCTTGCCAGAGTCGGCACTTCGATATACAATAACTCTGCAACACGAGCACTTCATGTCACTGCAGCATGCTGCAAGGTaacctacagggagagggaggagcatcAGATCGTACTGTGGAAGACGACGTTTGTACGACGTTTCCTCTTCGGGAACTTTCAATAACTGCCTGGCCAATGAGATTGTGATAAAGCGACGAGGCAACATGCTGGTGGGGTGTACCCTGATGCTGCAGAAATTCCCTTCACAGAAGTTCTACTTCCTGATTGGCTACACGGAGACACTGCTCTCACTTCTACAAGTGTCCTGTTAAGATGGAGGTACAGACCCTGGAGGATAAGGCTGTCTACAAGTACCTCAGACAGGAATTGCTAACAGATTTGACTTTCAAGACTTGTCATACAGGACTATTTTGGGGAAACTCACCACCGTAcagttgtaaaaaataaatggtaTTTGAATGAGTCTATTCATCTCTATCTACAGTGTGTGGAAACCAACTATTGAGTGTGTGCCTTGGAGTTGGCTCTTCACAGTAGGAATAGACAGACTACCAGATAGTGTTATCTTCAGGTTAACAGCAGTACACCTGTGTATTCAGTCAGGTGAAACGTCAACTGGGTGAAAATAAATCTAATGTATACAAGTGACACGCGTCTATCCTACACGGCAGACAATCTGTTCCAACATAGTACATTttaaggagaaggaaggagaaaggTAGGAAAGCGTGTCACAAATAGGCATTGTGTCAGATTCAAACCCACGTAGTTAGTGGTAGGTATGTGCTCCATAGGTGCTGGTATTGACAGCCAGACCTTACATTTTCCAGAGCATTCTGTAACACATTGCACCCTCCTGAACAGGCCCCATTGTTTTTCCCATCTCCTCTTTGAATTGGATTCCATTCCAGTCTAGAACTATTCACTACTTGTAAATCATGTGTTGGAGTTAAATGGACTTATGAAAAACTCAGTGGAATGCTTTTTCGTTTATTGATTTCTCATGACGCGGTCACATTGAACAAAGCATTAAAAAGCTGCTTCAGTGCAAAAAGACAAGGCACACAGATTACATCATCTTCGTCCATATCAAAGGTTAGAGTATGAACAATTCCCTTAAATATCAGTGATATATTCCTGTCTGTAAGGCCACATTGATTTTTCAAAACAATTAAAACGATTCCACACGAATAACATTTGTCTGATCTACATCTAGGAAAATGTCCCTCTTGATTTATTTTGGAAAAAAAGGGTCTCATGGCTATAATGGTTAATACTCAGACTGTATCACTCATTGTAGAACATTTTGTTTACACAGACAGTAAACTTCACATTCTCAGACACCTTGCCTGTGTCCCAATCTGTTCTTTCttctaaagtgtgcacttgtacaCTCCTTCCCATACATTTAATACCATTGGATCAGTATAGACATGGACTAAAGGGAGTTAATGTCTTATAATACCAGTAATTTACTTTGAAATCCACGAAGTCAACAAGTGCACACTAAATGGAAGAAAGTACAGCTTATTGTGAGGCAGGTTGGGAGGCACACAAACAGCAAAGATAGGACAAATACCACTTGTCCTCTGGGCTCACATTCTGAAGGAACAGGCTCGTTCAGTTTTCCCTTCTTTCACCTCTCTTTCCCTGGAAAAGTGCTCATAGACTAAAATGTAAAACACAGCTCTCGTCTTccttatgctccatacatacagcGAGTGGCAAACAGGGAAATCATTCCATTGGGCGAGAAGTAGCCACTTCGCCACCCACAGTGTGAACAAGACCATAAAGCAAGGGGAAAGGCAGGTTGGCTAAATGGGATTGATGGTGAAAAgcattgaggggggggggggataacagATCGGTGTCTAGGGACTTCATCATCCTACTCCGGGAAACCTTGGGCTAAATTGGGTCAAAACCTCTACATTGCTATTGCAACCGCTTCCTTTCGGTGGTAATGACACTGACTTCTGATTGGCTCTGGCTAGTGAGAAAAAGGTTGATTGGATGCCAGACCCTGTACTCAGATATAAAGAACATAATCATGAtaaacagtgtgttccagttacATTTTCTGCATATATTTTCTTATTAGAACATACTGATGTGGTTCCTTAaattccaattcacacatgcgtaTAATACAATgagtgaaataggacaaatataagcacccaccaaattatcatcatcatctgcaTGTAAAATGTGTCTCTGGAACACACCCAAGGAGTCTGTCTATACAGTGCAACATGCCTGCCAACACAATAACATCACAGTATGTGGATGGACTGAGGGTAGGTAGAGTTTGGGTTAGTCCATCCACAGAGTGAAACATCAGCACAGTTCAGGTGGAACAGTGCTCACTATGCTAATTATACTCAGACAGCATTTGTCCAATCCCAAATCGACCTCTCTAGCCCTCGCTCCTAAGCACTTGTGTAGATCTAAAAAGGAGCATTACGCCACAAGCAATCTGGTGAATATCATGCCAAATATATCCATGTGGACCTTATTTTCATATTCTATTGGGATTTTCTAAACATTGACAGCCATATTGATATGAGCCGTGCTTTGGGAAAACCTCTGATGGTGTCCAACATTGTGGTCACAGATGTACCTCCCAACCGTCACCTACTGCTTTCGAGGCGTTTTGTATGTTCTCAAACAAGCTCATCGCCATATTGTTAATACCTTTCAGATCTACATTTGGTTGCATATGGATAAGGGGCTATGGGGTAAATTTGGGATTGGACGTTGGCACTAGGCTATGGTCCCACCCTGCTTGCAGTGTGACTGGTTATATCTTGGTGGCACGGCAGCTGTCGCCCTCGCATGACTGCAGCTTGATCAGCCGTTGGTTCATGGCCTGGAGGAGGGTGGGGTCAACCTTCTTAACAATGTTCTCCAATTGGTGTGGGTCAGAGGTCAAGTTATATACCTCAAC

Function

NR:

description
PREDICTED: 28S ribosomal protein S24, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051667.1 False 2215 mRNA 0.42 3 16690905 16693430
TU423248 True 3176 lncRNA 0.43 2 16690958 16694551

Neighbor

gene id symbol gene type direction distance location
pargl LOC106569224 coding upstream 133200 16516800 ~ 16557705 (+)
LOC110523327 LOC105015301 coding upstream 220563 16454595 ~ 16470342 (+)
LOC110523326 dusp26 coding upstream 253173 16434263 ~ 16437732 (+)
ptges ptges coding upstream 832545 15852569 ~ 15858360 (+)
usp20 LOC106569850 coding upstream 851446 15816800 ~ 15839459 (+)
polm LOC106569276 coding downstream 18752 16712182 ~ 16726009 (+)
ved LOC106569620 coding downstream 39206 16732636 ~ 16735129 (+)
purbb LOC106562912 coding downstream 47923 16741353 ~ 16744067 (+)
LOC110523342 LOC106569363 coding downstream 255972 16949402 ~ 16967809 (+)
st8sia5 st8sia5 coding downstream 301964 16995394 ~ 17012011 (+)
G372513 NA non-coding upstream 1920 16624136 ~ 16688985 (+)
G372507 LOC106569240 non-coding upstream 28409 16609896 ~ 16662496 (+)
G372518 NA non-coding upstream 51010 16637303 ~ 16639895 (+)
G372506 NA non-coding upstream 81128 16609502 ~ 16609777 (+)
G372505 NA non-coding upstream 83168 16607332 ~ 16607737 (+)
G372373 NA non-coding downstream 42212 16735642 ~ 16738500 (+)
G372560 NA non-coding downstream 57814 16751244 ~ 16752267 (+)
G372570 NA non-coding downstream 77980 16771410 ~ 16773528 (+)
G372589 NA non-coding downstream 116501 16809931 ~ 16810186 (+)
G372597 NA non-coding downstream 129598 16823028 ~ 16823918 (+)
G372281 LOC106569177 other upstream 469972 16218328 ~ 16220933 (+)
G371615 LOC100194725 other upstream 895783 15791559 ~ 15795122 (+)
G371182 NA other upstream 1562088 15124290 ~ 15128817 (+)
LOC110519479 LOC106596183 other upstream 1637349 15047739 ~ 15054353 (+)
LOC118964542 LOC106569496 other upstream 1885434 14798616 ~ 14805526 (+)
G372618 LOC105030512 other downstream 177004 16870434 ~ 16882185 (+)
G373726 NA other downstream 1010683 17704113 ~ 17707757 (+)
arhgef28a LOC106568988 other downstream 1374013 18067350 ~ 18177035 (+)
G376320 NA other downstream 3289831 19983261 ~ 19983848 (+)
LOC118964570 NA coding upstream 859217 15829533 ~ 15831741 (+)

Expression


Co-expression Network