Gene
RNA
| Item | Value |
|---|---|
| gene id | atp5fa1 |
| gene name | LOC106569424 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 17119787 ~ 17125777 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| ATP synthase subunit alpha, mitochondrial |
| id | description |
|---|---|
| K02132 | ATPeF1A, ATP5A1, ATP1; F-type H+-transporting ATPase subunit alpha |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021601970.2 | True | 1892 | mRNA | 0.53 | 11 | 17119787 | 17125777 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110522812 | loxhd1 | coding | upstream | 48248 | 17019587 ~ 17071539 (+) |
| st8sia5 | st8sia5 | coding | upstream | 107776 | 16995394 ~ 17012011 (+) |
| LOC110523342 | LOC106569363 | coding | upstream | 151978 | 16949402 ~ 16967809 (+) |
| purbb | LOC106562912 | coding | upstream | 375720 | 16741353 ~ 16744067 (+) |
| ved | LOC106569620 | coding | upstream | 384658 | 16732636 ~ 16735129 (+) |
| LOC100136246 | LOC106569430 | coding | downstream | 579 | 17126356 ~ 17147778 (+) |
| LOC110523352 | LOC106569472 | coding | downstream | 65639 | 17191416 ~ 17217186 (+) |
| LOC110523353 | LOC106569485 | coding | downstream | 110035 | 17235812 ~ 17242911 (+) |
| tnpo1 | LOC106569531 | coding | downstream | 601744 | 17727521 ~ 17778710 (+) |
| LOC110523357 | LOC106569536 | coding | downstream | 666083 | 17791860 ~ 17871592 (+) |
| G373109 | NA | non-coding | upstream | 7114 | 17112458 ~ 17112673 (+) |
| G373075 | NA | non-coding | upstream | 9294 | 17071632 ~ 17110493 (+) |
| G373090 | NA | non-coding | upstream | 50362 | 17069181 ~ 17069425 (+) |
| G373073 | NA | non-coding | upstream | 74550 | 17045014 ~ 17045237 (+) |
| G373125 | NA | non-coding | downstream | 23279 | 17149056 ~ 17149268 (+) |
| G373128 | NA | non-coding | downstream | 26168 | 17151945 ~ 17152244 (+) |
| G373132 | NA | non-coding | downstream | 32533 | 17158310 ~ 17158643 (+) |
| G373133 | NA | non-coding | downstream | 32929 | 17158706 ~ 17158963 (+) |
| G373135 | NA | non-coding | downstream | 35490 | 17161267 ~ 17161493 (+) |
| G372618 | LOC105030512 | other | upstream | 237602 | 16870434 ~ 16882185 (+) |
| G372373 | NA | other | upstream | 381287 | 16735642 ~ 16738500 (+) |
| G372281 | LOC106569177 | other | upstream | 898854 | 16218328 ~ 16220933 (+) |
| G371615 | LOC100194725 | other | upstream | 1324665 | 15791559 ~ 15795122 (+) |
| G371182 | NA | other | upstream | 1990970 | 15124290 ~ 15128817 (+) |
| G373726 | NA | other | downstream | 578336 | 17704113 ~ 17707757 (+) |
| arhgef28a | LOC106568988 | other | downstream | 941666 | 18067350 ~ 18177035 (+) |
| G376320 | NA | other | downstream | 2857484 | 19983261 ~ 19983848 (+) |
| G377022 | NA | other | downstream | 3465703 | 20591480 ~ 20596863 (+) |
| LOC110522816 | LOC106568602 | other | downstream | 3617807 | 20508074 ~ 20759255 (+) |
