LOC110523353 (LOC106569485)


Basic Information

Item Value
gene id LOC110523353
gene name LOC106569485
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17235812 ~ 17242911 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976967.1
GTAATGCAAAAATCGTTCATGAAAAAAAAATGGACCCGATAACTTTAACAGGATCGGGGGAAAAAAAGCGTCTGGCAACAGTCGATATTAAAACATGCAGAGGCAGACGAGCTTGGGGCCTTACTGAGAGGAATGAGACTGcagcagaggggagaggagagggagagctgcCTACTGCAGCCTGCCTGCcacacagagtcagagacagatgACTACTAGTATTATCACGTTATTTTCCCCCGCTCAGCTACCCGTTGATTTGTGTATGAAAACCTAGCGCTTTTCTTTTACTCCTGCATGCTTGCCCCCCTTCTGGGTTTCTGCTTTTCGAGTGATCAGCTGATGAAGAGGCTAGCAGCTCGCCGCTATGCTGGTTTGCTAATTCTCTCCCCTCCAGCTGCAGCCGCAGCCCATCCAGCTACAACCCATTCTGATCCACAGAGTCAGACTGCAGACTGCAGCCAGAACGGGGCCTTGGAGGACATGGAGGAGGACATCAGCCTAAAGAAACGGAAAGGTGATCACCATGGCGACAAAGACTCTGAGTCCCGAGACTCCGGCCAGGAGGCTGGAGGTGAAAAGGTCAAGAAACGCAGAGGTAGACCTCCGGCAAAGAAACTGCCCCCCAACCCTCCCGAGCTCACCAAGCAGCTTAACACACTGGTGGACATGGTTATCAACTACAAAGACGGGTTGGGCCGTCAGATCAGCAAAGGCTTTGTCCAGCTGCCTTCTAGGAAGGAGGTGCCAGAGTACTACGAGTTGATCCGCAAGcctgtggacttcaggaggatCAGGGAGCGTGTGCGCAATCACAAGTACCGGAGTGTGGGAGATCTGGAGAAGGACATCATACTGCTGTGTCACAATGCCCAGACCTTCAACTTGGAGGGATCTCAGATATTTGAGGACTCAATCGTTCTCAAGTCTGTTTTTGAGAGTGCACGACAGAGGATCGTCATTGACGATGAGGAGAAAAAGGACAGCACTGCCATCTGTGACGATGGAGGTCGAGACAATCAGTTTGGTTCATCAGAAGTGAAAACGGTGACAAAGCAGGTGAAACAGAGGATGAAGAAAGAAGAGCGGAGCAGAAAGATGAAGGTCAAGAAGACAGTCTACAGTGATGTAGACAGCGATGAGGATCTGGAGGACAATACAGCTAAAGATGAGGGTTGACCTGGAGGACCAATGCTAGTTAATttatcctctttctttctctccgcTGTCACTGTTTTTGCAATGCAGCTTATTAGTTCTCACCTTGATAAAGATTTGTCTCATCTCAAGTCAAGAAGGCTACTCAAAGAAGGAATTTACATACCTAATGATGTTGGTCCTCAAGTAATTCATGCAGCCTTAAACTTTCATGTCTCTTTACTATTATTTTGCCTTTTTGTTCTTTGGGATTTTATGGTGTTGCTCTCTTGGTCCTCATATGGAAGCTATTGTGTGTATCCTTAATGCTTAACCAGAGGTTATCTCCTACCTCTTTTTTCAtgaattgtttttgtatttgaaaatgttattactgtatgtgtgaaatGACTTCATACGTCTTGGAGCATGATGATGTATTTCTGCTAAGACGGAGACCGCCCTCAGAGAGTGGCGCATGTTGATGACATCaatatatgttgtgttacagGTGTGGGAGATGGCAGAAAATGGTTGGTCAGTTCTtcaatatgactaggatggacACTACTGGATTGTTTCAAATCTCAAAATGTGTGGATTTAAAATGAAATATGATTCTGTAATAAAACTCCAAATGGGAGAATTGTATTTGAACAA
>XM_036976966.1
ATGCAAAAATCGTTCATGAAAAAAAAATGGACCCGATAACTTTAACAGGATCGGGGGAAAAAAAGCGTCTGGCAACAGTCGATATTAAAACATGCAGAGGCAGACGAGCTTGGGGCCTTACTGAGAGGAATGAGACTGcagcagaggggagaggagagggagagctgcCTACTGCAGCCTGCCTGCcacacagagtcagagacagatgACTACTAGTATTATCACGTTATTTTCCCCCGCTCAGCTACCCGTTGATTTGTGTATGAAAACCTAGCGCTTTTCTTTTACTCCTGCATGCTTGCCCCCCTTCTGGGTTTCTGCTTTTCGAGTGATCAGCTGATGAAGAGGCTAGCAGCTCGCCGCTATGCTGGTTTGCTAATTCTCTCCCCTCCAGCTGCAGCCGCAGCCCATCCAGCTACAACCCATTCTGATCCACAGAGTCAGACTGCAGACTGCAGCCAGGAGAACGGGGCCTTGGAGGACATGGAGGAGGACATCAGCCTAAAGAAACGGAAAGGTGATCACCATGGCGACAAAGACTCTGAGTCCCGAGACTCCGGCCAGGAGGCTGGAGGTGAAAAGGTCAAGAAACGCAGAGGTAGACCTCCGGCAAAGAAACTGCCCCCCAACCCTCCCGAGCTCACCAAGCAGCTTAACACACTGGTGGACATGGTTATCAACTACAAAGACGGGTTGGGCCGTCAGATCAGCAAAGGCTTTGTCCAGCTGCCTTCTAGGAAGGAGGTGCCAGAGTACTACGAGTTGATCCGCAAGcctgtggacttcaggaggatCAGGGAGCGTGTGCGCAATCACAAGTACCGGAGTGTGGGAGATCTGGAGAAGGACATCATACTGCTGTGTCACAATGCCCAGACCTTCAACTTGGAGGGATCTCAGATATTTGAGGACTCAATCGTTCTCAAGTCTGTTTTTGAGAGTGCACGACAGAGGATCGTCATTGACGATGAGGAGAAAAAGGACAGCACTGCCATCTGTGACGATGGAGGTCGAGACAATCAGTTTGGTTCATCAGAAGTGAAAACGGTGACAAAGCAGGTGAAACAGAGGATGAAGAAAGAAGAGCGGAGCAGAAAGATGAAGGTCAAGAAGACAGTCTACAGTGATGTAGACAGCGATGAGGATCTGGAGGACAATACAGCTAAAGATGAGGGTTGACCTGGAGGACCAATGCTAGTTAATttatcctctttctttctctccgcTGTCACTGTTTTTGCAATGCAGCTTATTAGTTCTCACCTTGATAAAGATTTGTCTCATCTCAAGTCAAGAAGGCTACTCAAAGAAGGAATTTACATACCTAATGATGTTGGTCCTCAAGTAATTCATGCAGCCTTAAACTTTCATGTCTCTTTACTATTATTTTGCCTTTTTGTTCTTTGGGATTTTATGGTGTTGCTCTCTTGGTCCTCATATGGAAGCTATTGTGTGTATCCTTAATGCTTAACCAGAGGTTATCTCCTACCTCTTTTTTCAtgaattgtttttgtatttgaaaatgttattactgtatgtgtgaaatGACTTCATACGTCTTGGAGCATGATGATGTATTTCTGCTAAGACGGAGACCGCCCTCAGAGAGTGGCGCATGTTGATGACATCaatatatgttgtgttacagGTGTGGGAGATGGCAGAAAATGGTTGGTCAGTTCTtcaatatgactaggatggacACTACTGGATTGTTTCAAATCTCAAAATGTGTGGATTTAAAATGAAATATGATTCTGTAATAAAACTCCAAATGGGAGAATTGTATTTGAACAA

Function

NR:

description
probable global transcription activator SNF2L2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976967.1 False 1797 mRNA 0.46 6 17235812 17242911
XM_036976966.1 True 1797 mRNA 0.46 6 17235815 17242911

Neighbor

gene id symbol gene type direction distance location
LOC110523352 LOC106569472 coding upstream 18626 17191416 ~ 17217186 (+)
LOC100136246 LOC106569430 coding upstream 88034 17126356 ~ 17147778 (+)
atp5fa1 LOC106569424 coding upstream 110035 17119787 ~ 17125777 (+)
LOC110522812 loxhd1 coding upstream 164273 17019587 ~ 17071539 (+)
st8sia5 st8sia5 coding upstream 223801 16995394 ~ 17012011 (+)
tnpo1 LOC106569531 coding downstream 484610 17727521 ~ 17778710 (+)
LOC110523357 LOC106569536 coding downstream 548949 17791860 ~ 17871592 (+)
LOC110523359 LOC106569632 coding downstream 634706 17877617 ~ 17879225 (+)
tmem174 LOC106569163 coding downstream 657582 17900493 ~ 17930164 (+)
btf3 btf3 coding downstream 797792 18040703 ~ 18047631 (+)
G373144 NA non-coding upstream 5532 17172353 ~ 17230280 (+)
G373143 NA non-coding upstream 64195 17171400 ~ 17171617 (+)
G373137 NA non-coding upstream 73754 17161620 ~ 17162058 (+)
G373135 NA non-coding upstream 74319 17161267 ~ 17161493 (+)
G373133 NA non-coding upstream 76849 17158706 ~ 17158963 (+)
G373293 NA non-coding downstream 2474 17245385 ~ 17245802 (+)
G373294 NA non-coding downstream 3001 17245912 ~ 17246427 (+)
G373317 NA non-coding downstream 22255 17265166 ~ 17265396 (+)
G373353 NA non-coding downstream 47624 17290535 ~ 17290797 (+)
G373364 NA non-coding downstream 56052 17298963 ~ 17299314 (+)
G372618 LOC105030512 other upstream 353627 16870434 ~ 16882185 (+)
G372373 NA other upstream 497312 16735642 ~ 16738500 (+)
G372281 LOC106569177 other upstream 1014879 16218328 ~ 16220933 (+)
G371615 LOC100194725 other upstream 1440690 15791559 ~ 15795122 (+)
G371182 NA other upstream 2106995 15124290 ~ 15128817 (+)
G373726 NA other downstream 461202 17704113 ~ 17707757 (+)
arhgef28a LOC106568988 other downstream 824532 18067350 ~ 18177035 (+)
G376320 NA other downstream 2740350 19983261 ~ 19983848 (+)
G377022 NA other downstream 3348569 20591480 ~ 20596863 (+)
LOC110522816 LOC106568602 other downstream 3500673 20508074 ~ 20759255 (+)

Expression


Co-expression Network