Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110523353 |
| gene name | LOC106569485 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 17235812 ~ 17242911 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| probable global transcription activator SNF2L2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036976967.1 | False | 1797 | mRNA | 0.46 | 6 | 17235812 | 17242911 |
| XM_036976966.1 | True | 1797 | mRNA | 0.46 | 6 | 17235815 | 17242911 |
17,231,000
17,232,000
17,233,000
17,234,000
17,235,000
17,236,000
17,237,000
17,238,000
17,239,000
17,240,000
17,240,000
17,241,000
17,242,000
17,243,000
17,244,000
17,245,000
17,246,000
17,247,000
17,248,000
17,249,000
NC_048569.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110523352 | LOC106569472 | coding | upstream | 18626 | 17191416 ~ 17217186 (+) |
| LOC100136246 | LOC106569430 | coding | upstream | 88034 | 17126356 ~ 17147778 (+) |
| atp5fa1 | LOC106569424 | coding | upstream | 110035 | 17119787 ~ 17125777 (+) |
| LOC110522812 | loxhd1 | coding | upstream | 164273 | 17019587 ~ 17071539 (+) |
| st8sia5 | st8sia5 | coding | upstream | 223801 | 16995394 ~ 17012011 (+) |
| tnpo1 | LOC106569531 | coding | downstream | 484610 | 17727521 ~ 17778710 (+) |
| LOC110523357 | LOC106569536 | coding | downstream | 548949 | 17791860 ~ 17871592 (+) |
| LOC110523359 | LOC106569632 | coding | downstream | 634706 | 17877617 ~ 17879225 (+) |
| tmem174 | LOC106569163 | coding | downstream | 657582 | 17900493 ~ 17930164 (+) |
| btf3 | btf3 | coding | downstream | 797792 | 18040703 ~ 18047631 (+) |
| G373144 | NA | non-coding | upstream | 5532 | 17172353 ~ 17230280 (+) |
| G373143 | NA | non-coding | upstream | 64195 | 17171400 ~ 17171617 (+) |
| G373137 | NA | non-coding | upstream | 73754 | 17161620 ~ 17162058 (+) |
| G373135 | NA | non-coding | upstream | 74319 | 17161267 ~ 17161493 (+) |
| G373133 | NA | non-coding | upstream | 76849 | 17158706 ~ 17158963 (+) |
| G373293 | NA | non-coding | downstream | 2474 | 17245385 ~ 17245802 (+) |
| G373294 | NA | non-coding | downstream | 3001 | 17245912 ~ 17246427 (+) |
| G373317 | NA | non-coding | downstream | 22255 | 17265166 ~ 17265396 (+) |
| G373353 | NA | non-coding | downstream | 47624 | 17290535 ~ 17290797 (+) |
| G373364 | NA | non-coding | downstream | 56052 | 17298963 ~ 17299314 (+) |
| G372618 | LOC105030512 | other | upstream | 353627 | 16870434 ~ 16882185 (+) |
| G372373 | NA | other | upstream | 497312 | 16735642 ~ 16738500 (+) |
| G372281 | LOC106569177 | other | upstream | 1014879 | 16218328 ~ 16220933 (+) |
| G371615 | LOC100194725 | other | upstream | 1440690 | 15791559 ~ 15795122 (+) |
| G371182 | NA | other | upstream | 2106995 | 15124290 ~ 15128817 (+) |
| G373726 | NA | other | downstream | 461202 | 17704113 ~ 17707757 (+) |
| arhgef28a | LOC106568988 | other | downstream | 824532 | 18067350 ~ 18177035 (+) |
| G376320 | NA | other | downstream | 2740350 | 19983261 ~ 19983848 (+) |
| G377022 | NA | other | downstream | 3348569 | 20591480 ~ 20596863 (+) |
| LOC110522816 | LOC106568602 | other | downstream | 3500673 | 20508074 ~ 20759255 (+) |
