Gene
RNA
| Item | Value |
|---|---|
| gene id | tnpo1 |
| gene name | LOC106569531 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 17727521 ~ 17778710 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: transportin-1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005051669.1 | False | 2849 | mRNA | 0.52 | 22 | 17727521 | 17775607 |
| XM_036976968.1 | False | 5405 | mRNA | 0.46 | 25 | 17727836 | 17778710 |
| TU424885 | True | 1990 | lncRNA | 0.39 | 1 | 17776214 | 17778203 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110523353 | LOC106569485 | coding | upstream | 484610 | 17235812 ~ 17242911 (+) |
| LOC110523352 | LOC106569472 | coding | upstream | 510335 | 17191416 ~ 17217186 (+) |
| LOC100136246 | LOC106569430 | coding | upstream | 579743 | 17126356 ~ 17147778 (+) |
| atp5fa1 | LOC106569424 | coding | upstream | 601744 | 17119787 ~ 17125777 (+) |
| LOC110522812 | loxhd1 | coding | upstream | 655982 | 17019587 ~ 17071539 (+) |
| LOC110523357 | LOC106569536 | coding | downstream | 13150 | 17791860 ~ 17871592 (+) |
| LOC110523359 | LOC106569632 | coding | downstream | 98907 | 17877617 ~ 17879225 (+) |
| tmem174 | LOC106569163 | coding | downstream | 121783 | 17900493 ~ 17930164 (+) |
| btf3 | btf3 | coding | downstream | 261993 | 18040703 ~ 18047631 (+) |
| arhgef28a | LOC106568988 | coding | downstream | 288640 | 18067350 ~ 18177035 (+) |
| G373775 | NA | non-coding | upstream | 742 | 17726572 ~ 17726779 (+) |
| G373774 | NA | non-coding | upstream | 1034 | 17726245 ~ 17726487 (+) |
| G373727 | NA | non-coding | upstream | 5112 | 17718833 ~ 17722409 (+) |
| G373730 | mol1a | non-coding | upstream | 9254 | 17717315 ~ 17718267 (+) |
| G373725 | NA | non-coding | upstream | 10480 | 17714652 ~ 17717041 (+) |
| G373790 | NA | non-coding | downstream | 198 | 17778908 ~ 17780141 (+) |
| G373792 | NA | non-coding | downstream | 7827 | 17786537 ~ 17786751 (+) |
| G373796 | NA | non-coding | downstream | 10422 | 17789132 ~ 17789428 (+) |
| G373797 | NA | non-coding | downstream | 10806 | 17789516 ~ 17789847 (+) |
| G373833 | NA | non-coding | downstream | 104640 | 17883350 ~ 17887537 (+) |
| G373726 | NA | other | upstream | 19764 | 17704113 ~ 17707757 (+) |
| G372618 | LOC105030512 | other | upstream | 845336 | 16870434 ~ 16882185 (+) |
| G372373 | NA | other | upstream | 989021 | 16735642 ~ 16738500 (+) |
| G372281 | LOC106569177 | other | upstream | 1506588 | 16218328 ~ 16220933 (+) |
| G371615 | LOC100194725 | other | upstream | 1932399 | 15791559 ~ 15795122 (+) |
| G376320 | NA | other | downstream | 2204551 | 19983261 ~ 19983848 (+) |
| G377022 | NA | other | downstream | 2812770 | 20591480 ~ 20596863 (+) |
| LOC110522816 | LOC106568602 | other | downstream | 2964874 | 20508074 ~ 20759255 (+) |
| LOC110522817 | LOC106568462 | other | downstream | 3052548 | 20831111 ~ 20842676 (+) |
| G373788 | NA | non-coding | upstream | 10757 | 17764702 ~ 17765457 (+) |
| G373786 | NA | non-coding | upstream | 20631 | 17755140 ~ 17755583 (+) |
