btf3 (btf3)


Basic Information

Item Value
gene id btf3
gene name btf3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 18040703 ~ 18047631 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601989.2
TCTACTGGCCCATCGGCCCTTCTCGCGGTTGCACCTCTGCCCGCACGTCACTTCCTCCAGCCTCTTTCGCTTCCATCTTGCTCCCCGCGTGTGCGCGCTGCTAGTGTGCAGGTCAGTTAGGAGCTCTAAAATACCTTCTTTCCTGCACTGTTTCTGCCATCCTTCAACGACACAAGATGAAAGAAATAATAATGAATCAAGAAAAACTTGCCAAACTTCAGGCACAAGTCCGCATCGGCGGCAAGGGCACTGCTCGCAGAAAGAAGAAGGTTGTGCACAGAACTGCAACTGCAGATGACAAGAAACTTCAGTTCTCCTTAAAGAAACTAGGAGTCAACAACATCTCTGGCATCGAAGAGGTGAACATGTTCACGAACCAGGGGACAGTGATCCACTTCAACAACCCCAAAGTGCAGGCCTCCCTGGCAGCCAACACCTTCACCATCACTGGCCACGCCGAGACCAAGCAGCTGACAGAGATGCTCCCCAGCATCCTCAACCAGCTGGGAGCAGACAGTTTGACTAGCCTCCGGAGACTGGCTGAGGCTCTGCCCAAACAGGCTGGAGATGGAAAAGCACCAATCGCCCCCATagaggaggaagatgatgatGTTCCAGATCTGGTGGAGAATTTTGACGAGGCTTCCAAGGATGAGGCAAACTAAAGGAAACAACAGACCTTCAGGAGAGTCTCAACAGGACTTGACTAGGCCGTGGGGTGGGCACAAGGCGTTATTTTTCTTTCTTGCCACCCGATTCTCCAAATGCTATTTTGTGCACTGCTGGCCGTGTCCAGTTTGAGAGTCAGTGAGAGATTGTATGTACGttactgtatgttgtctctctggGGTTCGAGGTCTTCAGCAGTTTCCTCCATGTTACTGAACCTTATTTCTTTGCAGTCTGGCTGAAACCATAATATCTGGAATAAACATTTTGCTATTGTCAACTAA
>XM_021601990.2
GCGGTTGCACCTCTGCCCGCACGTCACTTCCTCCAGCCTCTTTCGCTTCCATCTTGCTCCCCGCGTGTGCGCGCTGCTAGTGTGCAGATGAAAGAAATAATAATGAATCAAGAAAAACTTGCCAAACTTCAGGCACAAGTCCGCATCGGCGGCAAGGGCACTGCTCGCAGAAAGAAGAAGGTTGTGCACAGAACTGCAACTGCAGATGACAAGAAACTTCAGTTCTCCTTAAAGAAACTAGGAGTCAACAACATCTCTGGCATCGAAGAGGTGAACATGTTCACGAACCAGGGGACAGTGATCCACTTCAACAACCCCAAAGTGCAGGCCTCCCTGGCAGCCAACACCTTCACCATCACTGGCCACGCCGAGACCAAGCAGCTGACAGAGATGCTCCCCAGCATCCTCAACCAGCTGGGAGCAGACAGTTTGACTAGCCTCCGGAGACTGGCTGAGGCTCTGCCCAAACAGGCTGGAGATGGAAAAGCACCAATCGCCCCCATagaggaggaagatgatgatGTTCCAGATCTGGTGGAGAATTTTGACGAGGCTTCCAAGGATGAGGCAAACTAAAGGAAACAACAGACCTTCAGGAGAGTCTCAACAGGACTTGACTAGGCCGTGGGGTGGGCACAAGGCGTTATTTTTCTTTCTTGCCACCCGATTCTCCAAATGCTATTTTGTGCACTGCTGGCCGTGTCCAGTTTGAGAGTCAGTGAGAGATTGTATGTACGttactgtatgttgtctctctggGGTTCGAGGTCTTCAGCAGTTTCCTCCATGTTACTGAACCTTATTTCTTTGCAGTCTGGCTGAAACCATAATATCTGGAATAAACATTTTGCTATTGTCAACTAA

Function

symbol description
btf3 Predicted to be part of nascent polypeptide-associated complex. Predicted to be active in cytosol and polysomal ribosome. Orthologous to human BTF3 (basic transcription factor 3).

NR:

description
transcription factor BTF3 isoform X1

GO: NA

KEGG:

id description
K01527 EGD1, BTF3; nascent polypeptide-associated complex subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601989.2 False 953 mRNA 0.50 6 18040703 18047631
XM_021601990.2 True 864 mRNA 0.50 6 18040727 18047631

Neighbor

gene id symbol gene type direction distance location
tmem174 LOC106569163 coding upstream 110539 17900493 ~ 17930164 (+)
LOC110523359 LOC106569632 coding upstream 161478 17877617 ~ 17879225 (+)
LOC110523357 LOC106569536 coding upstream 169111 17791860 ~ 17871592 (+)
tnpo1 LOC106569531 coding upstream 261993 17727521 ~ 17778710 (+)
LOC110523353 LOC106569485 coding upstream 797792 17235812 ~ 17242911 (+)
arhgef28a LOC106568988 coding downstream 19719 18067350 ~ 18177035 (+)
LOC110523365 LOC106568911 coding downstream 348697 18396328 ~ 18410126 (+)
LOC110523366 nsa2 coding downstream 368143 18415774 ~ 18422258 (+)
egfl7 LOC106568866 coding downstream 439989 18487620 ~ 18506142 (+)
LOC110523370 fa69b coding downstream 510521 18558152 ~ 18578228 (+)
G374106 LOC106569011 non-coding upstream 6089 18033872 ~ 18034614 (+)
G374095 NA non-coding upstream 30322 18010112 ~ 18010381 (+)
G374094 NA non-coding upstream 37550 18002824 ~ 18003153 (+)
G373848 NA non-coding upstream 85913 17912480 ~ 17954790 (+)
G373833 NA non-coding upstream 153166 17883350 ~ 17887537 (+)
G374105 NA non-coding downstream 1308 18048939 ~ 18049208 (+)
G374157 NA non-coding downstream 73760 18121391 ~ 18122615 (+)
G374120 NA non-coding downstream 131911 18179542 ~ 18181098 (+)
G374291 NA non-coding downstream 134848 18182479 ~ 18182694 (+)
G374292 NA non-coding downstream 135119 18182750 ~ 18183159 (+)
G373726 NA other upstream 332946 17704113 ~ 17707757 (+)
G372618 LOC105030512 other upstream 1158518 16870434 ~ 16882185 (+)
G372373 NA other upstream 1302203 16735642 ~ 16738500 (+)
G372281 LOC106569177 other upstream 1819770 16218328 ~ 16220933 (+)
G371615 LOC100194725 other upstream 2245581 15791559 ~ 15795122 (+)
G376320 NA other downstream 1935630 19983261 ~ 19983848 (+)
G377022 NA other downstream 2543849 20591480 ~ 20596863 (+)
LOC110522816 LOC106568602 other downstream 2695953 20508074 ~ 20759255 (+)
LOC110522817 LOC106568462 other downstream 2783627 20831111 ~ 20842676 (+)

Expression


Co-expression Network