LOC110523365 (LOC106568911)


Basic Information

Item Value
gene id LOC110523365
gene name LOC106568911
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 18396328 ~ 18410126 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473438.2
GCTGCTTGACCATTAACCAAACAAATGCTCGATTTTCAGTGATTTACTGTCTCATGGCTCAATATATAAATAAAGACACGTTTTATATGATTTGCTAGATTAGATTTCGTCCtatttccacattgattcaagcCCCACCCGCTCGAGGCTAATGCAGTCTTGCCAGTTGTCAGTCGACTGGCAACACCATAGCATATCATGTTTGCAACGCTGAAGTTTGCAGCGTTGTTGCTCGCGGTTGTTGTCTGCTGGGCAACGCAAGATTATGATTATAATGACGCTGAAATAGACGAGGAGCCTACTCTGGGTGATTCTCCATATGGATCTCTTTGGCCGTTGCCTCAGAAAGTCAAAATATCCACGGTAGTATTCAAACTCAGCGGTGCTAGCTTCCATATATTCGACGCTAAAGAATCGTCTTCTGGTGCGAGCTGCAGACTTCTTCAAAATGCATATCGAAGGTATGATGAGTACATCTTTACCAGTTCCAGAAAACAAGGGCAAAACAAGAGCAAAAAGGCATTGGCCTCTGACATGTCTGAATTACAGGTGTGGATCACATCAGCTGACTCTGAGTGTGACAGCTACCCCAGTGTGACATCTGACGAGTCATACAAACTGTCAGTGGACTCTCCTGTTGCTGTGCTGAAAGCACCTAAGGTGTGGGGAGCTCTGAGAGGTCTGGAGACTTTTAGCCAGTTGGTGTATAAGGATGAATATGGAGCAaAAAGCATCAATAGGACAGACATTCACGACTTCCCACGGTTTGCACATCGAGGCCTCTTATTGGACACCTCTCGTCACTTCCTGCCCATCAAAGTAATTTTAGCCAATCTGGAAGCCATGGCGTGGAACAAATTCAATGTTTTCCACTGGCACATAGTAGATGACCCCTCCTTCCCTTACCTGAGCCGTACCTTCCCCCAGCTGAGTCAACATGGAGCATACCACCCGTACACACATGTGTACACGCCTTCTGATGTGAAGATGATCATCGAGTTTGCTCGCCTAAGGGGCATTCGGGTTGTCcctgagtttgacacccctgggcaCACTCAGTCATGGGGCAAAGGGCAGAAGGACCTGCTGACCCCCTGTTACTCTGGAGCCAGCCCCTCTGGTTCGTTCGGACCGGTCAACCCCATGCTCAACACCACCTATGACTTCATGAGCATGTTCTTCAAGGAAGTCAACACAGTGTTCCCTGATGCCTACGTCCATCTGGGAGGAGATGAGGTCGACTTCAGCTGCTGGAAGTCCAACCCTGACATCCAGAAGTTCATGGAGCAGCAAGGCTTTGGGATGGACTACAGCAAGCTGGAGTCTTTCTACATCCAGAGGCTCTTGGAtatcatcaccactaccaacAAGGGCTACATGATCTGGCAGGAGGTCTTTGACAACGGTGTTAAGttgaagtcggacacgGTAGTGCATGTGTGGATGGGGAACAAGGTGGAGGAGGAGCTTCAGAAGGTGACGGAGGCAGGCTTCACCACCATCCTCTCCGCCCCCTGGTACCTAGACTACATTAGCTATGGACAGGACTGGCAGAAGTTCTACAGAGCCGAGCCGCTCAGTTTCAAGGGCCCCGTGCCAGTGCTGTGGGGGAGCGGTTGTGGAGTGACAGGGATGTGAGGGACCTAAACGATGCCTACAGTCGTCTAGCCAAGCACCGTTGTCGCATGGTCCAgcgTGGTATCCCAGCTGAGCCTCTCTTTACAGGTTACTGTGCACATGAGTGAATGAATGAAAAGTGAAGACCACTGTGATCGTCTTCATGACTTCATTGATGCACTGATACGAGCCAAAATGTGTTTAAAAACAATCCTCATTCCATGTAATGTCACATTGATCTTGTTTTTAGAAAACCATTTGTTTTTATATGAATGTATGATTCAAATTATTaataattacattttagtcaATTCGCAGATGCTCTTACAGTGACTTGCAGTAgttagtgcatacattttcatattttttttatactggtcccccgtgggattCAAACTCTGAAATTGCAAGctccgtgctctaccaactgagccacatgggacttaataataataataaacctttGCAAGGTCA
>XM_021601996.2
GCTTGACCATTAACCAAACAAATGCTCGATTTTCAGTGATTTACTGTCTCATGGCTCAATATATAAATAAAGACACGTTTTATATGATTTGCTAGATTAGATTTCGTCCtatttccacattgattcaagcCCCACCCGCTCGAGGCTAATGCAGTCTTGCCAGTTGTCAGTCGACTGGCAACACCATAGCATATCATGTTTGCAACGCTGAAGTTTGCAGCGTTGTTGCTCGCGGTTGTTGTCTGCTGGGCAACGCAAGATTATGATTATAATGACGCTGAAATAGACGAGGAGCCTACTCTGGGTGATTCTCCATATGGATCTCTTTGGCCGTTGCCTCAGAAAGTCAAAATATCCACGGTAGTATTCAAACTCAGCGGTGCTAGCTTCCATATATTCGACGCTAAAGAATCGTCTTCTGGTGCGAGCTGCAGACTTCTTCAAAATGCATATCGAAGGTATGATGAGTACATCTTTACCAGTTCCAGAAAACAAGGGCAAAACAAGAGCAAAAAGGCATTGGCCTCTGACATGTCTGAATTACAGGTGTGGATCACATCAGCTGACTCTGAGTGTGACAGCTACCCCAGTGTGACATCTGACGAGTCATACAAACTGTCAGTGGACTCTCCTGTTGCTGTGCTGAAAGCACCTAAGGTGTGGGGAGCTCTGAGAGGTCTGGAGACTTTTAGCCAGTTGGTGTATAAGGATGAATATGGAGCAaAAAGCATCAATAGGACAGACATTCACGACTTCCCACGGTTTGCACATCGAGGCCTCTTATTGGACACCTCTCGTCACTTCCTGCCCATCAAAGTAATTTTAGCCAATCTGGAAGCCATGGCGTGGAACAAATTCAATGTTTTCCACTGGCACATAGTAGATGACCCCTCCTTCCCTTACCTGAGCCGTACCTTCCCCCAGCTGAGTCAACATGGAGCATACCACCCGTACACACATGTGTACACGCCTTCTGATGTGAAGATGATCATCGAGTTTGCTCGCCTAAGGGGCATTCGGGTTGTCcctgagtttgacacccctgggcaCACTCAGTCATGGGGCAAAGGGCAGAAGGACCTGCTGACCCCCTGTTACTCTGGAGCCAGCCCCTCTGGTTCGTTCGGACCGGTCAACCCCATGCTCAACACCACCTATGACTTCATGAGCATGTTCTTCAAGGAAGTCAACACAGTGTTCCCTGATGCCTACGTCCATCTGGGAGGAGATGAGGTCGACTTCAGCTGCTGGAAGTCCAACCCTGACATCCAGAAGTTCATGGAGCAGCAAGGCTTTGGGATGGACTACAGCAAGCTGGAGTCTTTCTACATCCAGAGGCTCTTGGAtatcatcaccactaccaacAAGGGCTACATGATCTGGCAGGAGGTCTTTGACAACGGTGTTAAGttgaagtcggacacgGTAGTGCATGTGTGGATGGGGAACAAGGTGGAGGAGGAGCTTCAGAAGGTGACGGAGGCAGGCTTCACCACCATCCTCTCCGCCCCCTGGTACCTAGACTACATTAGCTATGGACAGGACTGGCAGAAGTTCTACAGAGCCGAGCCGCTCAGTTTCAAGGGCACAGATGCTCAGAAAAAGCTGGTGATTGGAGGAGAGGCATGTCTGTGGGGAGAATATGTGGATGCTACCAACCTGACCCCTAGACTCTGGCCCCGTGCCAGTGCTGTGGGGGAGCGGTTGTGGAGTGACAGGGATGTGAGGGACCTAAACGATGCCTACAGTCGTCTAGCCAAGCACCGTTGTCGCATGGTCCAgcgTGGTATCCCAGCTGAGCCTCTCTTTACAGGTTACTGTGCACATGAGTGAATGAATGAAAAGTGAAGACCACTGTGATCGTCTTCATGACTTCATTGATGCACTGATACGAGCCAAAATGTGTTTAAAAACAATCCTCATTCCATGTAATGTCACATTGATCTTGTTTTTAGAAAACCATTTGTTTTTATATGAATGTATGATTCAAATTATTaataattacattttagtcaATTCGCAGATGCTCTTACAGTGACTTGCAGTAgttagtgcatacattttcatattttttttatactggtcccccgtgggattCAAACTCTGAAATTGCAAGctccgtgctctaccaactgagccacatgggacttaataataataataaacctttGCAAGGTCA
>XM_036976990.1
CTTTGGCCGTTGCCTCAGAAAGTCAAAATATCCACGGTAGTATTCAAACTCAGCGGTGCTAGCTTCCATATATTCGACGCTAAAGAATCGTCTTCTGGTGCGAGCTGCAGACTTCTTCAAAATGCATATCGAAGGTGTGGATCACATCAGCTGACTCTGAGTGTGACAGCTACCCCAGTGTGACATCTGACGAGTCATACAAACTGTCAGTGGACTCTCCTGTTGCTGTGCTGAAAGCACCTAAGGTGTGGGGAGCTCTGAGAGGTCTGGAGACTTTTAGCCAGTTGGTGTATAAGGATGAATATGGAGCAaAAAGCATCAATAGGACAGACATTCACGACTTCCCACGGTTTGCACATCGAGGCCTCTTATTGGACACCTCTCGTCACTTCCTGCCCATCAAAGTAATTTTAGCCAATCTGGAAGCCATGGCGTGGAACAAATTCAATGTTTTCCACTGGCACATAGTAGATGACCCCTCCTTCCCTTACCTGAGCCGTACCTTCCCCCAGCTGAGTCAACATGGAGCATACCACCCGTACACACATGTGTACACGCCTTCTGATGTGAAGATGATCATCGAGTTTGCTCGCCTAAGGGGCATTCGGGTTGTCcctgagtttgacacccctgggcaCACTCAGTCATGGGGCAAAGGGCAGAAGGACCTGCTGACCCCCTGTTACTCTGGAGCCAGCCCCTCTGGTTCGTTCGGACCGGTCAACCCCATGCTCAACACCACCTATGACTTCATGAGCATGTTCTTCAAGGAAGTCAACACAGTGTTCCCTGATGCCTACGTCCATCTGGGAGGAGATGAGGTCGACTTCAGCTGCTGGAAGTCCAACCCTGACATCCAGAAGTTCATGGAGCAGCAAGGCTTTGGGATGGACTACAGCAAGCTGGAGTCTTTCTACATCCAGAGGCTCTTGGAtatcatcaccactaccaacAAGGGCTACATGATCTGGCAGGAGGTCTTTGACAACGGTGTTAAGttgaagtcggacacgGTAGTGCATGTGTGGATGGGGAACAAGGTGGAGGAGGAGCTTCAGAAGGTGACGGAGGCAGGCTTCACCACCATCCTCTCCGCCCCCTGGTACCTAGACTACATTAGCTATGGACAGGACTGGCAGAAGTTCTACAGAGCCGAGCCGCTCAGTTTCAAGGGCACAGATGCTCAGAAAAAGCTGGTGATTGGAGGAGAGGCATGTCTGTGGGGAGAATATGTGGATGCTACCAACCTGACCCCTAGACTCTGGCCCCGTGCCAGTGCTGTGGGGGAGCGGTTGTGGAGTGACAGGGATGTGAGGGACCTAAACGATGCCTACAGTCGTCTAGCCAAGCACCGTTGTCGCATGGTCCAgcgTGGTATCCCAGCTGAGCCTCTCTTTACAGGTTACTGTGCACATGAGTGAATGAATGAAAAGTGAAGACCACTGTGATCGTCTTCATGACTTCATTGATGCACTGATACGAGCCAAAATGTGTTTAAAAACAATCCTCATTCCATGTAATGTCACATTGATCTTGTTTTTAGAAAACCATTTGTTTTTATATGAATGTATGATTCAAATTATTaataattacattttagtcaATTCGCAGATGCTCTTACAGTGACTTGCAGTAgttagtgcatacattttcatattttttttatactggtcccccgtgggattCAAACTCTGAAATTGCAAGctccgtgctctaccaactgagccacatgggacttaataataataataaacctttGCAAGGTCA

Function

NR:

description
beta-hexosaminidase subunit beta-like isoform X2

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004563 beta-N-acetylhexosaminidase activity molecular_function

KEGG:

id description
K12373 HEXA_B; hexosaminidase

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473438.2 False 2091 mRNA 0.47 13 18396328 18410126
XM_021601996.2 False 2179 mRNA 0.47 14 18396331 18410126
XM_036976990.1 True 1767 mRNA 0.49 14 18396655 18410126

Neighbor

gene id symbol gene type direction distance location
arhgef28a LOC106568988 coding upstream 219293 18067350 ~ 18177035 (+)
btf3 btf3 coding upstream 348697 18040703 ~ 18047631 (+)
tmem174 LOC106569163 coding upstream 466164 17900493 ~ 17930164 (+)
LOC110523359 LOC106569632 coding upstream 517103 17877617 ~ 17879225 (+)
LOC110523357 LOC106569536 coding upstream 524736 17791860 ~ 17871592 (+)
LOC110523366 nsa2 coding downstream 5648 18415774 ~ 18422258 (+)
egfl7 LOC106568866 coding downstream 77494 18487620 ~ 18506142 (+)
LOC110523370 fa69b coding downstream 148026 18558152 ~ 18578228 (+)
LOC110523377 LOC106568724 coding downstream 948145 19358271 ~ 19364089 (+)
LOC110523383 LOC106568686 coding downstream 1089478 19499604 ~ 19512291 (+)
G374438 NA non-coding upstream 9565 18383114 ~ 18386763 (+)
G374389 NA non-coding upstream 111856 18283987 ~ 18284472 (+)
G374372 NA non-coding upstream 135797 18260273 ~ 18260531 (+)
G374367 NA non-coding upstream 139379 18256524 ~ 18256949 (+)
G374361 NA non-coding upstream 148040 18248052 ~ 18248288 (+)
G374463 NA non-coding downstream 32094 18442220 ~ 18442478 (+)
G374488 NA non-coding downstream 71205 18481331 ~ 18481568 (+)
G374490 NA non-coding downstream 74142 18484268 ~ 18484500 (+)
G374491 NA non-coding downstream 76259 18486385 ~ 18486613 (+)
G374492 NA non-coding downstream 76910 18487036 ~ 18487244 (+)
G373726 NA other upstream 688571 17704113 ~ 17707757 (+)
G372618 LOC105030512 other upstream 1514143 16870434 ~ 16882185 (+)
G372373 NA other upstream 1657828 16735642 ~ 16738500 (+)
G372281 LOC106569177 other upstream 2175395 16218328 ~ 16220933 (+)
G376320 NA other downstream 1573135 19983261 ~ 19983848 (+)
G377022 NA other downstream 2181354 20591480 ~ 20596863 (+)
LOC110522816 LOC106568602 other downstream 2333458 20508074 ~ 20759255 (+)
LOC110522817 LOC106568462 other downstream 2421132 20831111 ~ 20842676 (+)
LOC110523400 LOC106568542 other downstream 2698043 21108129 ~ 21160149 (+)

Expression


Co-expression Network