Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110523366 |
| gene name | nsa2 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 18415774 ~ 18422258 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| nsa2 | Predicted to be involved in maturation of 5.8S rRNA and maturation of LSU-rRNA. Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleolus. Predicted to be part of preribosome, large subunit precursor. Orthologous to human NSA2 (NSA2 ribosome biogenesis factor). |
| description |
|---|
| ribosome biogenesis protein NSA2 homolog |
| id | description |
|---|---|
| K14842 | NSA2; ribosome biogenesis protein NSA2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021601997.2 | True | 1278 | mRNA | 0.49 | 6 | 18415774 | 18422258 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110523365 | LOC106568911 | coding | upstream | 5648 | 18396328 ~ 18410126 (+) |
| arhgef28a | LOC106568988 | coding | upstream | 238739 | 18067350 ~ 18177035 (+) |
| btf3 | btf3 | coding | upstream | 368143 | 18040703 ~ 18047631 (+) |
| tmem174 | LOC106569163 | coding | upstream | 485610 | 17900493 ~ 17930164 (+) |
| LOC110523359 | LOC106569632 | coding | upstream | 536549 | 17877617 ~ 17879225 (+) |
| egfl7 | LOC106568866 | coding | downstream | 65362 | 18487620 ~ 18506142 (+) |
| LOC110523370 | fa69b | coding | downstream | 135894 | 18558152 ~ 18578228 (+) |
| LOC110523377 | LOC106568724 | coding | downstream | 936013 | 19358271 ~ 19364089 (+) |
| LOC110523383 | LOC106568686 | coding | downstream | 1077346 | 19499604 ~ 19512291 (+) |
| LOC110523391 | LOC106568645 | coding | downstream | 1629135 | 20051393 ~ 20381619 (+) |
| G374438 | NA | non-coding | upstream | 29011 | 18383114 ~ 18386763 (+) |
| G374389 | NA | non-coding | upstream | 131302 | 18283987 ~ 18284472 (+) |
| G374372 | NA | non-coding | upstream | 155243 | 18260273 ~ 18260531 (+) |
| G374367 | NA | non-coding | upstream | 158825 | 18256524 ~ 18256949 (+) |
| G374361 | NA | non-coding | upstream | 167486 | 18248052 ~ 18248288 (+) |
| G374463 | NA | non-coding | downstream | 19962 | 18442220 ~ 18442478 (+) |
| G374488 | NA | non-coding | downstream | 59073 | 18481331 ~ 18481568 (+) |
| G374490 | NA | non-coding | downstream | 62010 | 18484268 ~ 18484500 (+) |
| G374491 | NA | non-coding | downstream | 64127 | 18486385 ~ 18486613 (+) |
| G374492 | NA | non-coding | downstream | 64778 | 18487036 ~ 18487244 (+) |
| G373726 | NA | other | upstream | 708017 | 17704113 ~ 17707757 (+) |
| G372618 | LOC105030512 | other | upstream | 1533589 | 16870434 ~ 16882185 (+) |
| G372373 | NA | other | upstream | 1677274 | 16735642 ~ 16738500 (+) |
| G372281 | LOC106569177 | other | upstream | 2194841 | 16218328 ~ 16220933 (+) |
| G376320 | NA | other | downstream | 1561003 | 19983261 ~ 19983848 (+) |
| G377022 | NA | other | downstream | 2169222 | 20591480 ~ 20596863 (+) |
| LOC110522816 | LOC106568602 | other | downstream | 2321326 | 20508074 ~ 20759255 (+) |
| LOC110522817 | LOC106568462 | other | downstream | 2409000 | 20831111 ~ 20842676 (+) |
| LOC110523400 | LOC106568542 | other | downstream | 2685911 | 21108129 ~ 21160149 (+) |
