LOC110523377 (LOC106568724)


Basic Information

Item Value
gene id LOC110523377
gene name LOC106568724
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19358271 ~ 19364089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602038.2
CTCTTTTGTGTGCTTGTCACCTTACTGGATATTATGTATAGATTTTTAGCCAACATCCTTGATTACAGTTTTTATTGGTAGAGTAGTTTATATTAAGCAACATAATTCAGGATGAACGGAATGAACTCCTTTATCTAGGAACCAAGTACAACCGTGGACGTGTTTACTTTCGGACATTCACACTTGTGACAAATTTCCGAAGTACACATTTCAGCATGGCGTTTAGAAAAATGTGTAACGTTGGATCTCTAATTGTGTACAGCATAACGATTGTTGCGGCGTTGTAATTATTCATTTAGCTCTTTATAGAGGTGAAATATTCCTGTTTAAACCACGAGTACCGATTAGTTATGTTATTGTTACTTAGCAAATGTAGCGAATTCGTTCATGTTTGAGCTTCTGATCACATGTTAGCAGAGCTAGCGAACTTATAGCAAGTAGCTAACTTACTGAGCTACAGAACGTTTGAAGTATATTGGGCTGTCAAAAGCTAGTCATTTAGCAAGGTTAACTTTTTTTAATGAGATATTAAGAGTATAAAGTGGAAGTCCTGGCTGTCATTACTCTCACACTGCTTCCCACCAAGAAATCAACCGAGTTGACAGCAAGATTTTCAAAAGCTAAGCTCACAGCCATCGAGACATGATGTGTAAAGTCAAACCAGAGAAAACGGACTCTGCTGCTTCTAAAGTGCCAAAATCCAGTCAGAGCCAAACGAAAAAGAAACCTCGAAAGAAAACGTTTTATCAACACACCAAGAAAAAAGAGCCCATTTCAAAAGATCAAGGTAAAACCAAGGCGTTGCTTCCCCCGAAAGATGCCCAACAGTTTTCAACCAACTGGAAAACGTTACTAGAGGTGTTCAAATCCAACCCCCCTCCTGTGAAAAGGCAACTGTTTCAGCAAAACTCAAAGAAGGAAGTCCCTAAGAAACCCACTAAAGACATTTCAAAGGACGAGACTCATAAGAAACCAACTAAAGACGTTTCGAAGGAGGTGGCTGTGGTGCATAAGAAGCCTGCTAAGAACGTATCAAAGACAGTGACTGATGCCAAGGCAACTAAGCCCAAGCAGGTGAACAGTGGGAAAGCATGGAAGGACAGTTCTGTTCCTAGTAAAACTCAGGTGAATGGGATAGATCCAGGACAATCGGGGACAGAACAGCCCAAAGCCAAGAAGAGGAAACAGAGCAGTGTCCAGATAGACAGCAATGCACAGTTGAAGAAGAAGAAAGTAGAAGTGGAGGAAAAGAAACCCACTGAATTGGACATGTGGTTTGATGATGTGGACCCTGACGACATTGAGGCCACAGTGGGAACAGAGGCAGCCGATATCATGAGGAAGATCCAAGGCACTCAGAAGACAGACGCCCAGACCACAGAGAGCGCGCTGGTCAAGGACAGGGCATTTGAGGGCCTGACCAAGGCGGTGGCTATGGACTGTGAGATGGTGGGTGTGGGGCCAGATGGAGAGGACAGCATCGTAGCCCGGGTCTCCCTTGTCAACCATTTTGGAAAGTGCATCTATGACAAATTCGTCAAACCCACAGAGAAGGTGACGGACTACAGGACAGCTGTCAGTGGCATCCGACCAGATGACATCAAAAACGGTGAGAATGTGAAGACCGTACAGAAAGAGGTGGCTGAGATCCTCCAGGGGAGAACGCTTGTGGGACACGCCATTCACAATGACCTCAAGATTTTGTTCTTGGATCACCCAAAAAAGAGAATCAGAGACACCCAGAAGTATAAATCTTTCAAGAAAATTGTGAAGagTGGTCGGCCCTCTCTGAAACTCCTGTGTAGAGAAATACTCGGTGTCAAAGTACAACAGGGAGAACATTCATCCGTCCAAGACGCCCAGGCGACCATGAGGTTGTACACGATGGTGAAGAAACATTGGGAGGCAGAGATCAAGGCTAGTCATAACAACCCGGAGTTAACCAAGAAGACCAAGGAACCAAGGAAGCCCAAATCACCCAAACACAAATGAACCTGACTGACTGAACTGCATCAGTCTGTAATGGGACTGAGGACTCGCCCTTGACTAGATGGCACAGGACAGGAGGCTTGATTGAATTAACAATTGTTTCTTTTGGAAGTGAACTTGCACTTTGAGGTCTTAGTGAATTGAGGAATCTCTTGGTGACCCATAAGGATTACACAAAGCGGTTTGATCAAATTAATATGGACTTTATTCAAATCCCACTCAACCCTAATCATTCAGAAAGTTGGTCATCAGAAACAGCCTAGTGCCGCTTTAACTATGCATGGATCTTTCACTCATTGTCTGCTATATCAGTTTTCTGGTTCGAATGTTTTAAAATGTGGTATTTTTCTGATCTAACATCCATGTCTTGATGTTGAATATCTGCAGTTTAAATTCCAAGTGTTTGGATTATGTGTTGCCTTTGTATTTGAGAGTTTTTCATGAATTAAAGGTAAGATATTTAAATCACAAGTAA

Function

NR:

description
RNA exonuclease 4-like

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0004527 exonuclease activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K18327 REXO4, REX4; RNA exonuclease 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602038.2 True 2464 mRNA 0.43 8 19358271 19364089

Neighbor

gene id symbol gene type direction distance location
LOC110523370 fa69b coding upstream 780043 18558152 ~ 18578228 (+)
egfl7 LOC106568866 coding upstream 852129 18487620 ~ 18506142 (+)
LOC110523366 nsa2 coding upstream 936013 18415774 ~ 18422258 (+)
LOC110523365 LOC106568911 coding upstream 948145 18396328 ~ 18410126 (+)
arhgef28a LOC106568988 coding upstream 1181236 18067350 ~ 18177035 (+)
LOC110523383 LOC106568686 coding downstream 135515 19499604 ~ 19512291 (+)
LOC110523391 LOC106568645 coding downstream 687304 20051393 ~ 20381619 (+)
LOC110523393 LOC106568920 coding downstream 1026441 20390530 ~ 20414156 (+)
LOC110522816 LOC106568602 coding downstream 1143985 20508074 ~ 20759255 (+)
LOC110522817 LOC106568462 coding downstream 1467022 20831111 ~ 20842676 (+)
G375481 NA non-coding upstream 2153 19355874 ~ 19356118 (+)
G375477 NA non-coding upstream 4683 19353291 ~ 19353588 (+)
G375445 NA non-coding upstream 47978 19309904 ~ 19310293 (+)
G375444 NA non-coding upstream 48963 19308826 ~ 19309308 (+)
G375421 NA non-coding upstream 105027 19252927 ~ 19253244 (+)
G375485 NA non-coding downstream 12200 19376289 ~ 19376554 (+)
G375486 NA non-coding downstream 13357 19377446 ~ 19377709 (+)
G375488 NA non-coding downstream 15060 19379149 ~ 19379375 (+)
G375491 NA non-coding downstream 19520 19383609 ~ 19383849 (+)
G375494 NA non-coding downstream 24274 19388363 ~ 19388589 (+)
G373726 NA other upstream 1650514 17704113 ~ 17707757 (+)
G372618 LOC105030512 other upstream 2476086 16870434 ~ 16882185 (+)
G372373 NA other upstream 2619771 16735642 ~ 16738500 (+)
G372281 LOC106569177 other upstream 3137338 16218328 ~ 16220933 (+)
G376320 NA other downstream 619172 19983261 ~ 19983848 (+)
G377022 NA other downstream 1227391 20591480 ~ 20596863 (+)
LOC110523400 LOC106568542 other downstream 1744080 21108129 ~ 21160149 (+)

Expression


Co-expression Network