LOC110523379 (LOC106568729)


Basic Information

Item Value
gene id LOC110523379
gene name LOC106568729
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19363387 ~ 19375235 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602039.2
GATCAGGTACTGAGTAGGTTTTTGGGAGGAGATTTGCAGATCAGTGATTCTGCGCAGTCCGAGTGCAATGTAGTCGATTTTAAACAAACATTGTTTCATTCTAAACTCTGCCTTAATTGTACCAGTCCCTGTCATAGCCATGggggtctgctctctctcttactacatgaatccatatgtgttatttcatcattttgatgtcttcaatattattctacaaagtagaaaatagtacaaaataaaggaaaaccgtTGAATGATTaggtgcggtagcagagagaacagtctatgactagggtggctggagtctttggcaaaaGTAGGAGCTTCATATGTCTCAGGCAAATCATAATTAAATACATAAATGCTCATAATTAATTAGGGATAAAACAAACATATTACAGGATTTTGTTGTGTCGCTGCGCTGTGCAGCATCTACCGAACTGTTTGGATTGGAACACACCCACATGTAAACAAATAGTGACGTACACTATTTTAGTTCCACCCACAATGCAACGCGGACGAACCTGGGGGATCCTCCGAGAAGACgggacaaaaaaaacaaacagattagAGACAAGTTAAGACAAAGCAGGTCGTTAAAACGATAATTTGTGAATGGTGTAATTTAATAGTGGTAGCTCTAGCTGCCTAATTTTAAGGAAAAAAAATAGTTTAGTAAGTTCCAACTTTGTTAGTGGAGGTTAGCGGTGTGACAGAAGCCAGACTTTGCTTTGGCGACAGAAGAGTTAGCCAGCTtcatagctaatgttagctgtcaGCTATCGTGACAACAAAACAATGCTCCGTTGATAACCATAGTTTGTTATTTAGCTAGCCAGAGTATAGACCTGATCAAAGctatcattaaaacacacatctcTGTGATTTCTTCAACTATCAACAAGACCATTGACGTTGGCTAACTAACGCTAGTTTTCCTTGTCCAAGTGAGCCACAGCCGGTAGTGGCTATTGTTAAATTAACTGAGGCGAGTCGCTGAATCAATTACTGGGTCAAAATGAACAGCGACGAGGCGGCAGCTCCGAAACCTGTCACCGACGATGATGGAATGACATGGTGGTACCGATGGCTCTGTAAAATCGTTGGGGTCCTGGGCGGAGTATCATGTGCCATCTCAGGAGTGTGGATGTGTGTCACTGTCAACCCTTTAAACATCGCTGCTGGAGTATGGATGGTGTTGAATGCCTTTGTGCTGTTCCTGTGTGAAGTTCCATTCTGCTGCCAGTTCATTGAGTTTGCAAATGCAGTGGCAGCTAGAGCTGACAAATTCAAGCCATGGCAGAAAGCCTTCTTCTACTGCGGGATGGCACTGTTTCCCATATTCCTGAGCTTCTCCATCACCACTTTGTTTGGAAATGCCATTGCCTTCGCTACGGGAGTCCTCTATGGTCTCGCCTCACTGGGCAAAAAGGGTGATGCGGTGAGTTACGCCAGGCTGAATCACCAGAAACTGGGGGATGAGGAGAAGCTGACCGGGACGACTGACGGGTCAATATAGTGACATGGCTTATCCCTCCGGTCTCACAGAGGAGGAACACTATCCTTTATCAAGGGATAAAGATGTCAACCCCTCTCCCCCACCATCTCTTCTCTTTtaccccacctctccctctctgttactGAGTTTATGTATCTAAACTGCTGCATCTTTAATGTCTTATTTGATGAAATGTGTCCGTATAGATTTGATGTAATTTGGTCCTTTAATAGTGTGAATTTAGTTTGACATTTTAGTTCATGTAAAGGTTTAGCGGTTGTtttaatacgtttttttttttttttcatttttgtgTGCTGTTTTGTTGTCCTGGTTACTGGGGTATCCATTTTTTGCAAGTAGGAAAAGGAATGTACCATTTTAGCCAATCCGCCTTTCAGGAAACCTGGGCGATAGTGAAAGTGGAATTGTAGTTTTTGTTAAGGATTTTCCCAAgtcatcttcctctgtttgccaCCGGCAATTGGAAATTCGGCCATTGGGACAGTAATCCCAAATGTATATCCATCCAGTGTACCCAAAGATGGGAGTCCTCTTTTATATTGATTACTTGAGATATGAAGTAACCAATATTCAGTTTTCAACTGAACACTTTGAACAAACATTGACAACATTGCATGTTTACAGAGGACATAGGATTCACTGTGACATCATAGTTCTAACAACGGTTAGATGAACTATCTTATCAGCTTTTGGGGCATTCTACAAATTTGCTTGTAATCAAACAGTCACAGGTTGCTATAGGTTGTGTATATCATGAGAAGAAAAACAGATTAAGGGCTCAATTCAATACATCTCTCTGAAGTTCAGCGCTGTAGTGCAATTGAAATTCAAAGGTAATGTTCCCACTTTcgtggagactgcattcacggtaaacgatGCAtgtgtcggctcaatcggaaatgactTTAACATTTAAATCACGCTATAGCGCTGAACCTCTGCGATACAAATTGAATTGGGCACTAAAGAACGGCTATAGTGCTTTAGAACCTATTGTTGTTCCCTTCTGGAACCTGAATTGACCTCGAACCCGGTTGATCTATGCCACTTCAGAATGTTTATTTTCGACTCTACAAATCCTAGTGCGATCTAGCCTTCTGACCCATGGAAGCAGAATGTTAAAGGTTTAAGGACTGTGATGAGATAATGTCTTGATTCAGAGACTAATAGGGTTTAACACAGCACACAAAGCAAATATTAGTCTTTTTCCTTAGTCAGATAGGAGATACAATCTTCTGTCCAACCTCTGATCACAGGTGAAATGTGTTGTTCAGCAACATGCTACTGTTGTTTTTTTGGTCGACTCTTTTGGTGAAAAGTAATGCATTGAGTTAGCTTGTTTGGCCACACCTCTTACAGTAGTGTATCTCGCACATTCTCTCTGGATTGGAAAACATTTCAATCAGTAAAATGGTCGCCCATGATTGGTTCTCAGTTaggcatattttttttttctataTACATCATACAGGGTAACTAGCAAGAACAATATTGCAGGTCACTTTAACCAAAGCATAGGTACTATCCACATACACGTACAAATGAACCAGCTTTTGTTAAAAGGAATCAAACACTACAGGCATACAAGCGATATTATATCACTTAGGAATATATGGAACACTATTTAGGCTCATAGTTCAAAACAATATGCAACATAGGCGTGTTAGCAGCTATCTaattgctagatcgaatccccgagctgacaaggtaaaactgtgtctttctgcccctgaacaaggcagttaacctactgttcctaggctgtcattgtaaataatttgttcttaactgacttgcctagttaaataaaggttcaaaatatatatttcaatagTTTCAGATATTATGCATTTTACCAACATTTTCATTACTGTAACAGAccaaaaaaagttaaacaaatcaatattttattttaacaTTGCTCCCCTAATGAAAAGGCCTGAGTTAAACATAACACtgaaaataaatatttcaaaTGAAATAGCTTTTTCCCAATTTGAGCTCTTCAGCCATTTTGGTAATGAGAAGGCCAAATGGGGTACTCTAGATGATGCATAATGGATGAATAAAACCTGATTGGAGTTTTTACAGGAACTAGAAAGTTTTTGGACACATATCCAGACATTGTATGTAATAAATATAGTTTAATGTAAACTTTGTTTTATTCAAATAAGTTAAGCTTTATAAAATGACCTGAGAATTTAATCCGGGCGCATTTCGGTAATACGATTTTGGGGTGAAAATGTGAAAAATTCGGGTAAATGTAAAATGGGTTTAAAAAAAGACATCTTGGTTCTCGGAATGATAGTCGATTTTGGCAGGTTCATCATGGTTTTGTAACTCAATTTGCTAGACATATTTCAAAAGAGATTTACCCCCATATACAAGAGGGACACTAATCCTTACCTTATGATCTCTGGGCACATACAAGTCCTTAATGGTTACACTATAGCGTTATGGaaaatattttttacttaactgggaaagtcagttaagaacaaattcgtatttacaatgacagctggatgagatacagcctggattttaaCCAGGGACTCTAGTGACACCtcttgcgctgagatgcagtgccttagtgtTTGAGGTTccagagtggtgcagcagtctaacaGCTTGCCCCATGCAATAGGAATGAGTTTTGCAGCACAGACCTCTAGTTTGCTGTAAGGGGTTTCTGTGTATTCTTCTGTTTAGGTATGTTGAATCGAAGTGAATTTAGTTTGTCTTTGTTGCTTTTTTATGATGTAATATACTATAAGGTCAAAATGAGCATACTAACTTGGTTGCTAGTTATATGGgggtgcgtttgtaaattcactctggagtcCCAGAGAACGCTTTGGGCGTTCGTAAATTGAGCGTTTTGCTCTGgccaaggagtagggttgatccgagcgttctgaccttaaCAGCAGTCAAACTATCCGGCTAAAATTAGCTAGCTTGATAGCTACTTCCATACAAAAAttagagaacacctcactctgaccattttactcaccctagcagagctggttaggcttttttcatgttatccagagcattggtgactaacTTTGCTGCTGGCAACACTAATTCGCATTTTTGccgacatttactgacaccggtcatgtCGAACGTTCTTAAATTAATCAGTTATAGTAGATGGCCAGAGCAAATTTACGAACGCGCCCATGGTATTCTCGCCATATGGCTAAACATTTTTCCTCCTAGTTATTACTTGTGATTTAAATATCTTACCTTTAATTCATGAAAAACTCTCAAATACAAAGGCAACACATAATCCAAACACTTGGAATTTAAACTGCAGATATTCAACATCAAGACATGGATGTTAGATCAGAAAAATACCACATTTTAAAACATTCGAACCAGAAAACTGATATAGCAGACAATGAGTGAAAGATCCATGCATAGTTAAAGCGGCACTAGGCTGTTTCTGATGACCAACTTTCTGAATGATTAGGGTTGAGTGGGATTTGAATAAAGTCCATATTAATTTGATCAAACCGCTTTGTGTAATCCTTATGGGTCACCAAGAGATTCCTCAATTCACTAAGACCTCAAAGTGCAAGTTCACTTCCAAAAGAAACAATTGTTAATTCAATCAAGCCTCCTGTCCTGTGCCATCTAGTCAAGGGCGAGTCCTCAGTCCCATTACAGACTGATGCAGTTCAGTCAGTCAGGTTCATTTGTGTTTGGGTGATTTGGGCTTCCTTGGTTCCTTGGTCTTCTTGGTTAACTCCGGGTTGTTATGACTAGCCTTGATCTCTGCCTCCCAATGTTTCTTCACCATCGTGTACAACCTCATGGTCGCCTGGGCGTCTTGGACCTGCAACACATTCTCAGACATTGGCTACGGTTCACAGTTGTACTACTGTATATGTGAGCTACAAAATAAAGATTGATAAAAAGCTGA

Function

NR:

description
calcium channel flower homolog isoform X1

GO:

id name namespace
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0030285 integral component of synaptic vesicle membrane cellular_component
GO:0005262 calcium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602039.2 True 5462 mRNA 0.40 5 19363387 19375235

Neighbor

gene id symbol gene type direction distance location
LOC110523375 LOC106568736 coding downstream 28363 19214846 ~ 19335024 (-)
LOC118964778 NA coding downstream 158721 19204538 ~ 19204666 (-)
LOC110522815 LOC106568813 coding downstream 264917 18962511 ~ 19098470 (-)
LOC110523374 LOC106568818 coding downstream 483199 18853417 ~ 18880188 (-)
LOC118964544 LOC106568982 coding downstream 619855 18742518 ~ 18743532 (-)
LOC110523380 LOC106568716 coding upstream 20950 19396185 ~ 19428814 (-)
LOC110523384 LOC106568686 coding upstream 132488 19507723 ~ 19559754 (-)
LOC110523382 prkaa1 coding upstream 186644 19561879 ~ 19580316 (-)
LOC110523387 LOC106562971 coding upstream 214909 19590144 ~ 19618069 (-)
LOC110523381 LOC106568667 coding upstream 245790 19621025 ~ 19825534 (-)
G375589 NA non-coding downstream 7674 19355454 ~ 19355713 (-)
G375588 NA non-coding downstream 8051 19355128 ~ 19355336 (-)
G375584 NA non-coding downstream 13243 19349842 ~ 19350144 (-)
G375583 NA non-coding downstream 13567 19349570 ~ 19349820 (-)
G375534 NA non-coding downstream 58058 19240501 ~ 19305329 (-)
G375554 NA non-coding upstream 1990 19377225 ~ 19377666 (-)
G375601 NA non-coding upstream 6927 19382162 ~ 19382452 (-)
G375678 NA non-coding upstream 87526 19462761 ~ 19463023 (-)
G375683 NA non-coding upstream 91074 19466309 ~ 19466586 (-)
G375711 NA non-coding upstream 109914 19485149 ~ 19485374 (-)
G374786 NA other downstream 804220 18558140 ~ 18559167 (-)
G374189 NA other downstream 1360217 18002820 ~ 18003170 (-)
LOC110523354 LOC106569496 other downstream 1841900 17483696 ~ 17521507 (-)
G373228 LOC106569424 other downstream 2237580 17124037 ~ 17125807 (-)
LOC110523341 LOC106569324 other downstream 2421196 16909582 ~ 16942359 (-)
G377800 NA other upstream 1318861 20694096 ~ 20694708 (-)
G377809 LOC106568602 other upstream 1329378 20704613 ~ 20705140 (-)
G377991 NA other upstream 1654223 21029458 ~ 21029783 (-)
G378359 NA other upstream 2416427 21791662 ~ 21791993 (-)
LOC110523434 LOC106567989 other upstream 2802030 22177265 ~ 22179322 (-)

Expression


Co-expression Network