LOC110523380 (LOC106568716)


Basic Information

Item Value
gene id LOC110523380
gene name LOC106568716
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19396185 ~ 19428814 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602041.2
GGCTGTTAGCCCTCTCCTCCCCTGGTTACTGATCATGGCACAATGTCTAGGAGTATAAAACGCAGGACCACTCCTTTCACGGCGTCTGGTGACTTCCTCTCATTTCCGTAGCTGGACAGGGGTGTGTGTTGCCCCGTGTAAGCGAGGATGGCGACGCTTGTGGAATCTGCAGACATTGAGACTTTAAGCAGTTCGAGCAACGTTATGGCATCCCCAATGTCCGCGAGTCTCTCGCACCGTTTTGACGACAACAAATTTTACCTGCTTGTGGTTATTGGAGAAATAGTCACGGAGGATCATTTGAAGTGTGCCATTGCGGATATAGAAAAAGGGATTCGCTCATGGGACACCAACCTCATTGACTGTAACCTGGATCAGGAACTAAAGCTCTTTGTCTCCAGACATTCAGCCCGTTTCTCTGCAGATGTACGAGGGCAGAGAATTCTTCACCACAAAAGCAGCGTTCTCGAGACAGTAGTGCTTATCAACCCCTCAGATGAAGCTGTCAGCACTGAGGTTTGTCAGATGATCTCAGACACAGCCAGAAACAAGCTGCTGGTGCTTTCAGGACAAAGCTTTGAAAACACAGGAGCACTGATTTTGCAGTCtggctccttctctttcttcaaCTTCATAGAAATATTCACAGACCAAGAGATTGGTGAATTACTTAGCACTATTCGCCCAGCAAACAAGGCAAGCCTAACCCTCTATTGCCCTGAGCAAGGTGACTGGAAAAACTCAAACTTGGACAAACACAACCTACAAGACTTCATCAACATGAAGCTCAATTCACCACTGATACTCCCAGAGATGGAAGGTCTCTCAGAGTTCACAGAATACCTGTCGGAGTCAGTAGAAATCCCATCGCCATTTGACATGCTGGAGCCTCCGACCTCTGGCGGTTTCCTGAAGCTCTCAAAACCATGCTGCTACATTTTCCCCGGCGGCCACGGCGACTCTGCCCTCTTTGCGGTGAATGGGTTCAACATGCTCATCAACGGGGGCTCAGACCGCAAGTCCTGTTTCTGGAAGCTGGTGAGACACCTAGACCGGGTAGACTCCATCCTCCTGACCCACATCGGGGACGACAACCTGCCAGGCATCAACAGTATGCTTCAGAGGAAGATGGCTGAGCTGGAGGAAGAGCAGTCACAGGGCTCCCAAGCTACTGGCGACTGGTTGAAGAACCTCATATCCCCAGACATTGGGGTTGTGTTCTTGAACACCCCTGATAATCTGGGGAACCCTGCTGAACCCAACTTCAGGGTGAGGAGGAACATTGAAGAGGCAGCACACACACTCCATTACCTGAGCAAGTTGAATCTGAGGCCCGAGCCTTTGCAGAGGCCGGTCGGGAACACTATCGAACCCATCATTCTGTTTCAGAAGATGGGCGTGGGGAAGCTTGAGATGTATGTGCTGAACCCGTCGAAGAACAGCAAGGAGCTGCAACATTTTATGAAGCAGTGGACAGGCAGCGAGAAAGACAAAGCCACTGTTATTCTGCCCAATGGAAAAGAATCTGAGCTCCCAATTTCTTATATGACCTCAATCTCTTCCTTGATTGTGTGGCACCCATCAAACCCTTCAGAGAAGATAGTACGTGTCCTGTTTCCAGGCAATGCCTCACAGTATCACATTCTTGAAGGTTTGGAAAAACTAAAACACTTGGACTTCTTGAAGCAGCCAGTTGTCACCCAGAAGGAGCTATCTTCAAACTTGGCACCAGCTCTAAAGCAAGCAAAGCTGAAACATAAAACTGACAGCAAGGAGAGTTTGAAGTCAGTCTCTAGGCCATCACCAAGCAAAAGTTTCAAAAAGGAGTCAAAGGAGGAGGCTCCAGAGAAGGCAAAGACAGATGCAGAATCGGCTCAAGAAAAGACTAACAAATTTGAGAAAAAAGACAAACCTTTGGTGAAAAAAGAAAAAGCGAAAGCCCCGGAAAAAGAAGTGAAGGTGAAAGCAGAGCCAACTACCGAAACTCCAGAAAAGAAGAAGGCTGAAATGAAACCAAAAGCTCTTAAGGAGAAGATTATCAAAAAAGAACCCAGGAAGTCTGTAGATAAGAAAAATGATGAAAAGGAGGTAAAGAAAGAAGTAGTGAAGAAAGATGATAAGCTAACATCTAAAAAGGAAGAAACACCCAAAACGGAACAGAAGCAAGAAACACCCAAAAAGGAACAGAAGGTGAAGAAAGACATTTTAAAGAAAGACAGAGATTTCAGGAGGGATTCCCCCATGAAGGTGAGGAAGGAAGAGAATAAGGAGCAAAAGAAAGACGATCTAAAGAAAGACATAAAGAAGCCATCCAAGGATTTAAAAAATACTCCATCTGCTTTAGGCGAAGGGAAAAAACTTGCAGCAAAACCAAAACCTCTGAAAAAAGATGACACTACAAAGAAAGACTTTGGAAGCCCTTCCAAGTCCAAGGCAAAACTGAAAGTCACCAAGAAGGACCTCAAGGCCACAGATGCTAAATCTGCTGTTGCAGGAGCTGCAGCTGTCACAGCAGGAGTGGTAGCCACTGCCACTTGTGCTGCAGAGGTCCTTGAGACAGATAGAGCCATGATGTCTTCTCCAGAGGACCTCACTAAGGACTTTGAAGAGCTCAAAGAAGAGGAGATCTTTCAGGAAGAAGAGCCGGTGGTGATCCACAGAGAGGACCTCATGCACTCTAAGGAGTCCCCTGAAGCAGCAGAGTCTCTGGATGAGGGGATCACAACCACTGAGCATGAAGGAGAAAGCGGGGAGACTCCAGAGGAACAAGAGCATAAAGGGAAGTTGAGCGGCAGCGGCAGTGAGAAGTTTGAAGATGAGGGAACTGGGCTAGATTatgaagagaagggagagacagaagaggtCCATGAGCCAATGAGAAGGGAAATGGACAACCATAAACATGCTgatgacagtgaagatgaggacTCTGAAGACGAGGATGCAGAGCCAGACCAATGTGGAAAAGATCTTAACAGAAATGAAAGAGAAGTACAGAAGTGGGGCCTGTCGGTGACACCCCCTCCCAAAACTTCTGagcctctctctccgtctgcatCTATTCATGATGAGACCCTTCCAGCTGGCTCTGATGACGAAGCAGCCTCAGATGATGAGAACCGTGACGAGGCATACACTGCTACATCTGGCCACACCCAGTCAACTATTGAGATCTCCAGTGTGCCAACTCCAATGGACGAAATGTCCACTCCAAGGGACATTATGAGTGACGAGACTACTAACGATGAGACAGAGGATTCTCCCTCTCAGGACTTTGCCAGGTTTGGAGGAACAATGTTAGGAGACCTTGAGAGGAAGCGGCTGTCTCCACTACACGACGGCCCAGAGTCAGACCATTCAAAGAGCGATGCCACCGAAGGAAGGGACTACAACGCTTCTGCATCCACAATATCTCCACCATCGTCACTGGAAGAGGACAAAGAGGAAGGGTTCAAGTCCGACAAATTTGGTCTTGATTCAGCAAGCTCTATACTCACCACTACTTCACCTCTCATCCGCTCCCCTTCAGCTCCCAAAGGAACCTTTGACTCATACTTATCTGGATTCGCGGCACCAATTGAACTGTGCACAACACTTTCAGGATCATCAAAGGCAGCAGCTGGGTCTTCTACTAGCCCAGATGACAAGACATTGGAAGGTACCACCTCACCTCATTCCTCTGGTCACACCCCTTACTTTCAGTCTCCCGTGGATGAGAAGGCTGGCTCTATAGCACCTGCAAATGACCATGGGCCTGTAATTGTAGAAGTTACAAGTGATAAAGAAGATTCCAACAGGGTCAGCCCCATGGATGACCCAATTCCTGACCACACCTCGACTGTAGAGAAGGTGCTGTCCCCAATCAAGAGCCCGCCGCCTGTAGTAGAAGGAAAGTTACACTTTGATTTAGATCATATGTCAACAATGCACTCGAGTCAAGATGAGAAGAAAAATGGGGCTAGCGACAATACCTCATTCTCATCCACAAACCCATTCGCAGGTTTCAAAGAGGAGAGTAAAATGTCGATCTTGGAGGCAACCACGTCTGATAAATCGGGTAGCCCTGTAGATGAGGCTGTAGCAGAGGACACTTTTTCACACATCGCCTCGGCTTCCACTGCCTCACTGGCCACCAGCTCATTCCCAGAGCCTATGACAGATGACGTTTCCCCTGCTCTCCATGGTGAAGCCGGTTCCCCTCTATCAACAGAGGTGGAGGACTCCCTATCTGTCTCTGTGGTTCAGACTCCAACCCCTTTTCAGGAGGCAGAGGTCTCTCCTAAGGGGGAGAGCCCCAGGCCCATGTCAATATCTCCAGACATCTCACCAAAGACAGCCAAATTAAGGACACCAGTGCAGGAGCCTAAATCCCCAGAGCATTCCACCATGTCATTTGGCCAGGAGTCCCCTGATCACTCATTAGCCCTAGATTTCAGCAAACAGTCTCCAGAGCACCCTTCTGCAGGCAGCCTGCGCGCCACAGAGAACGGACCAACAGAGGTGGACTACAGCCCCTCAGAGGGGAATGATCTGAGATCCTCCGAGCAGTACAGACCCACTGTAGACAAGCCTATGCTTTTCAAAGACAATGACTCAGGTCGCGCCACTTCTGCGTCCCCATCAGACGCATCTCAGTCCACCCCCTCGACAACTACGCCTTGTCAGATGAGGGAAATGTCACCGGGCTTAGCCCAGCAGATGGACAAATCCCCTGCCACCCCGAAAGGGTcttccccctcatccccctcctaTTCTTGCTTCACTCAGAAAACAGATATGCCCCTAGGAGCAGAGACTAATCCCTTCAAATGTGGTGGAGATTCCAAATCCCCTGTCAGCCCCAAGGTTCCCTCCCCATCCTACATACCACTCTCTTTCAACCACTCCGACTATAAGAAGTGTGCAGGTGGTTCCAAGGACCCAGACTCCTCCCAGAAGAGCCCCTCTCCTGGGTCTAGGACAGATGTTGACCTTTGCCTTGTGACCTCTTGTGAATACCGCCACCCTAAGACAGAGCTGTCCCCATCCTTCATCAACCCCAGTCCTTTGGAGTACTTCATGAATGAGGAGAATCCTCTGGAGGAGGAAAAGCCTCTGGCTAAGTCAGGTGGAGGACCTCCACCCCCTGGTAGTAAACTCCACGCTAAGCAATGTGAAGAGACCCCACCAACCTCCATCAGTGAATCCGCCCCATCCCAGACGGATTCGGATGTTCCCCCTGGGACAGAGGAGTGTCCCTCTATTACTGCGGATGCAAACATAGACTCTGAGGATGATTCTGAGACACTACCAACAGACAGGACCCTGACTTACAGACATGCTGATCCTCCTCCCGTGGCTCCCAGGGACTCTGCTCCATCTCCAGCCCACCCAGATGTCACCATGGTGGATCCGGAGGCCGACAAGCCCCCCGCTGACGACAACAACCAGACTAAGGACAAGGACTCAAAGGCAGAGGGAGCTGAGAAAGCTAAGAAGAAGAAACTCACCAAGACCAAGTCCTCCTCACCAGTCAGAAAGACTGGCCTTTCAAAAGTAAAGGATTCAAAAGCAATGGCCTCTCCTAAGAAAAGTGTAGGAGAAGGGAAAGATGCCAAAAATGCAACCAATAGCTCTGCATCCAGGGGTGTGAAAAGTGCCACATCAGGTTCAGGTAGTGGAAAGGCAGCAACTGCAATACCCATACCCAACTGCCCTCCCATGTACATGGATTTGGTTTACATCCCAAACCACTGCAGCGCCAAGAATGTGGATGCAGAGTTCTTCAAACGGGTCAGGTCATCCTACTATGTAGCAAGTGGCAATGACCAGACAGCCCAGGAGCCCAGCAAAGCTGTCCTGAACTCACTGCTGGAGGGCAAAGCCATGTGGGGAAACAACATGCAGGTGACCCTGATCCCAACTCATGACTCAGAGGTGATGAGAGAGTGgtaccaggagacccatgagaaGCAGCAGGACCTGAACATCATGGTGCTGGCCTCCAGCTCCACCGTGGTCATGCAGGACGAGTCCTTCCCTGCCTGCAAGATAGAGCTGTGAACCTGATCCTGGGCCTCGTTCCATTCCAAATTATGCTTCTCTTCTTCCCTTAACTTCTCCCTTCACTGGAGTGTTCACTCTATTGACGTTACAAGACGTTTCTGTTAGGGAGCACCTTCTGATGGAGGGAAGGGGTCGTAGTAATTTGGATTGGAACAACCCTCTGGACTCTCCTGATCAAATGATCTAGTAACCGAGAGATCTAGTGATCAAGTGGATCATGTTGTTAGTGGTATCTTTGAGTTGGGGTGAGGGATGACGTAGACAGAAAGTAAATGTAAACGCATGTCATTTAAACAAAGGCTGTGTGCCAACATTAATGAAATATACATAGCCGTCATTAAAATGATGTTCTGGTTTGAAAAAACAATGGCAAACATACTTGTTTTAATGAAGTCCACAATACCCAAAAGAAGTATCTGACACAAGTATCAGCTTTGTGGAGCACTTTGAGTAAGGAAATGTCATAGCAATATCCTGTACGGAATGAAAAATTGTATCTGACAACTATAGAGAACATAAAATGAGAACATAGAATGCTCCAACTGTATAAATTGGTGCTCTTGACGTAGATTGATTTTTTCAGAAAACAACATTTCCCATGAGCACCAATTATCAATAAATTATCAAGTCAAAACAATATAGAACAATTCATGACAATATACTTGTTCATACTGGGGACAGAAAAAGGTCTGTCAATAATACAAAATGATTGAGATATTATGATGAAATCTATTTGTCCTCAAGGTTGGGACTACACGTCAAAATATGTACAATTCTGGTACATGCCGTTACTTTCttaatgtaatccattacagttactagttacctgtctaaaattgtaatcagtaacatacattttggattacccaaactcagtaatgtaatctgattacttttggGTGACTTTCCCCTTTAGACACATTAGAAGAAGACACAAAGGATCCATCAaaacgcatttggtgtgtcatcctaTTGATCTCTGACTTGTGGCCACACTCACTGGTGGAACAACCTTAAACTTGCGCCTTtgttcaatgctgaattgaatgtcattgagagaacagaaaggtgtcaatgtatttttcgcaaacatcctttctgaattgaaAAATTAATCCAACTAGTagtcatctagtttttcaaaagtatctgtaatccgaTTACAATACAACTGATTACAGTCACAGTTTTTCCCGTGTAATGTAATCAGTTATTTcccatgtaatcagttactcccccgAGTGTGATTGTAGGTCATCAAACAATGCCTCAAGCCACTGATTATATCTCTGTCTATAAATATAACTCATCTATCAAATTGATTTTACCCAGCTGCATACACCAAAGGATCGAGGAAAACACGTTTAAGTTATTGCCTTAGGAAGTGAATTGAATGTAAAAGATTGATGCACTGAGGACAAATAGCCTATGTGAGAATTAGTAGAAAACGTAAAACACAATTTAACAAGAGTCCGTCCCCAACTGTCAGATAATCTCTGTGTAGAGTTAGTTTAGTTTGATACTGATGGAGTAAATACATAGAGCAAGATGAAGTTTCAACTGCACTGAGGGGCCTATGAAACATTACAAATGTTTGTCTTAattaattgtaattatttagaGAACAAGACAATTCTAGTCAAGATTTGCCCATGACCCTGACACTATCTTGATTTAGAATTACGCTGCAGGCTTTGTGATCCTGTTCGTGCAAACGATTGTTGATTTGTCTTTGCTAACATCAGTTAATGCAAAACTTTTGTTATTTCATCTCAGTGTTTTAAGagttgttatttatttaatttattattGGCTAAGTTTTAAAATGTAATCTAGTCTCTTAAAGATATACAATATGAAAGGTACGTGTATAATCGGCCAAACTTCATTTCAAAAGCGCGTTGTTTTAAAATAATGTCTTATGTTCAGATTTGATCTTTATAGCTTATTGGTTTCTATTGATTTAAATAGAACTCTATGTAGTGTACTGTAAACTTCTGCTCAGTCCGTCCTCCCTAGCCAAGTAAAACTCAACTCCACGATGTACTTCACATCAATGGAGTTGAGCGGAGATGAGAGTGGAAGGACTGGAGCTCCGATGGCACAAAGGTTTTTAACAAAAACGACGGATTTCAGCACCAACAAAATAGCCCAGGGAGGGGTCTGTGGATCTCTCAGTCCGTTCATTCATAAGTTAGTCACGTTATATCTCAGACAGCTGCATCATTCGTGGGGgctacatgtttactgttgccttgttttaTGTGATTTTGGAGCTCCAGTTCGCCCACACTAGTCGCTGTTGAACTCTGTTGATGTGAGGTACACAGGGGAGTTGAGTTTTACTTAGCTAGTCCTCCCCAGCATTTTGTGTAGAACCACAAATGGAGCCCTAGCGACTGCTTGAATGTGCTAGAATATCTTCAGGCTTGTGAAGTGAGACACTTTCCTAACCTtacatttttttctctttttAAAACACTGTACTATAATTATAAAAAGCTTTGTAACAGGGTGAATGGTTGGAAGAAATATGCATGAGTAATAAGCTTTTTTTCTCTTTTTAAGGATTGGGGAAATCTGTTCTTATCTGCCAAAACAACAACTCAAGGCTGTGCTAATAGAAATGAAGACATGCATTAAGAGTTGCTTGTTCCTTGAGGTGTTGCCAGCTACGCCATAATGGCATGGAGTGAAAAGTTAAACTAAAGGCCCTATCTTCTGACAATGTTGGCAATTTTAAGATCTTTAAATCTACTTCATCATAGTCCATGGCCCTAGCTACTCAAGGAGGATATGTAATACCACGGCCTACCACAGGTCTATATAAAGCAGTGGTCGGTATGCCATTTGTGGTTGCAAGATGGCAGCACCTCTGCCAAATCCCTACGAGTCAGGTAAAGCTCTGTATAGATACGCCTTGAGAAGAGTAAAACACGGGGGAGAGTGACTGTTTTGGGTATGAGTTGGGGTGTGAAAGACAAAAAAACAAGACACATTTAAAGCCAGGACAAATTATGATAATTGTAAATGTGAAGCCATGAACAGAACAATAGAAAACAGATGTTCAAACACCAATCGTCTACATCAACCAAACGATTTAATGACCATGCCTATAGGGAGGCCACCAACATACTACAACCGTCCACCACTCAGAACAAACGGTCACTGGTTAAGTAAAAACTCACATAGGCAAAATATTACAGTCAACCAACCAGGGCCTGGGACTTAGTTACTGCCTCCACAACAGGTCTCCATGGCAACACATTTATCCAGTTGTCCTGTACAGCTCTGCAACCGGATACTTTAATCATAAGCATGACCATCCTGCTGTTCAACCACAAACTATAGTGACCGACCGACCACACACACCACTCTTTCTTGATCTTTCCTCACtcaactactgtactgtattcctTGCTCTATCTTTCTCTATTTTGGGTGATTGTTAATACTGTCTGTCTGCAACTGTGTGGTATAAAATTGTCTTGTGATCTCTGCATCCTCTCCTTTTCCAAACTCATATCTAATGTAGCGGTTAGTTTCAAGTGAAAGTATTATTTAGTGCTTTTCTGATATTTGTGTGCaatgtctcctctccctcctatggGACATTTGATGTAAAGCCTACTATTAAAACCTACAAAACAAGAGCCACAAACTCTTGTGGAAAATCATGAA

Function

NR:

description
microtubule-associated protein 1B-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005874 microtubule cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K10429 MAP1; microtubule-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602041.2 True 9726 mRNA 0.45 7 19396185 19428814

Neighbor

gene id symbol gene type direction distance location
LOC110523379 LOC106568729 coding downstream 20950 19363387 ~ 19375235 (-)
LOC110523375 LOC106568736 coding downstream 61161 19214846 ~ 19335024 (-)
LOC118964778 NA coding downstream 191519 19204538 ~ 19204666 (-)
LOC110522815 LOC106568813 coding downstream 297715 18962511 ~ 19098470 (-)
LOC110523374 LOC106568818 coding downstream 515997 18853417 ~ 18880188 (-)
LOC110523384 LOC106568686 coding upstream 78909 19507723 ~ 19559754 (-)
LOC110523382 prkaa1 coding upstream 133065 19561879 ~ 19580316 (-)
LOC110523387 LOC106562971 coding upstream 161330 19590144 ~ 19618069 (-)
LOC110523381 LOC106568667 coding upstream 192211 19621025 ~ 19825534 (-)
LOC110523392 NA coding upstream 615429 20044243 ~ 20051842 (-)
G375601 NA non-coding downstream 13733 19382162 ~ 19382452 (-)
G375554 NA non-coding downstream 18519 19377225 ~ 19377666 (-)
G375597 NA non-coding downstream 24105 19370572 ~ 19372080 (-)
G375589 NA non-coding downstream 40472 19355454 ~ 19355713 (-)
G375588 NA non-coding downstream 40849 19355128 ~ 19355336 (-)
G375678 NA non-coding upstream 33947 19462761 ~ 19463023 (-)
G375683 NA non-coding upstream 37495 19466309 ~ 19466586 (-)
G375711 NA non-coding upstream 56335 19485149 ~ 19485374 (-)
G375720 NA non-coding upstream 60707 19489521 ~ 19489722 (-)
G375821 NA non-coding upstream 67128 19495942 ~ 19496458 (-)
G374786 NA other downstream 837018 18558140 ~ 18559167 (-)
G374189 NA other downstream 1393015 18002820 ~ 18003170 (-)
LOC110523354 LOC106569496 other downstream 1874698 17483696 ~ 17521507 (-)
G373228 LOC106569424 other downstream 2270378 17124037 ~ 17125807 (-)
LOC110523341 LOC106569324 other downstream 2453994 16909582 ~ 16942359 (-)
G377800 NA other upstream 1265282 20694096 ~ 20694708 (-)
G377809 LOC106568602 other upstream 1275799 20704613 ~ 20705140 (-)
G377991 NA other upstream 1600644 21029458 ~ 21029783 (-)
G378359 NA other upstream 2362848 21791662 ~ 21791993 (-)
LOC110523434 LOC106567989 other upstream 2748451 22177265 ~ 22179322 (-)

Expression


Co-expression Network