LOC110523382 (prkaa1)


Basic Information

Item Value
gene id LOC110523382
gene name prkaa1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19561879 ~ 19580316 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602044.2
acaccactgcaaataCACACAGTTTGACAGCAATTTGTctagacttttattttgaaaatccACTTCAACTCGTCCCAATGATGACACGGAAGAGTATTTTTTTTCCACGACCCTTCGCAATCGCAGAGTTTTCTAGTTACCGCAGTCACAAAGTCAATTTAGCTATATCGCAAAAAGGTATAAAAAcagaaatgtgctttttggtcttaatttcaGGTTAGGCTATGGCATAGTAGtgtggttaagtttaggttttAAATCAGATATTTAGAAGGtacattgtagaaataggcggggtgTATCTATTTGTGGCTGTGGTATCTAGTGTCGATCCAGTCGCAGTTGCTTGCTCGCTTCTGCTCACAGCAACATAAGCACAGAACAGCATCAAGGCTTGGTCACTGCGGGAAAGATGGCGACGGATAAACAGAAACATGAAGGCAGAGTAAAAATTGGACACTATATTCTCGGAGACACACTTGGGGTGGGGACGTTCGGGAAAGTTAAAGTGGGGCAGCACGAGCTGACCAAACACCAGGTGGCTGTGAAGATCCTGAACAGACAGAAAATCCGCAGTTTGGATGTGGTGGGGAAGATCCGTAGAGAGATCCAGAACCTCAAGCTCTTCAGGCATCCGCACATCATCAAGCTGTACCAGGTGATCAGCACCCCAACAGACATCTTTATGGTGATGGAGTATGTGTCTGGAGGAGAGCTCTTTGACTACATCTGCAAAAATGGAAAGttgGATGAGAAGGAGAGCCGTCGTCTGTTCCAGCAGATCATTTCCGCAGTAGACTACTGCCACAGACACATGGTGGTGCACAGAGACCTGAAGCCTGAGAACGTCCTGCTGGACGCACAGATGAACGCCAAGATCGCGGACTTTGGTTTGTCAAACATGATGTCCGATGGAGAGTTTCTGAGGACAAGTTGTGGTTCTCCGAACTACGCTGCCCCTGAAGTCATCTCTGGAAGGTTATATGCAGGTCCTGAGGTGGACATCTGGAGCAGTGGGGTGATCCTGTATGCCCTGCTGTGTGGGACGCTGCCCTTCGATGACGACCATGTGCCAACGCTCTTCAAGAAGATCTGTGACGGGATCTTCTTCACTCCTCAGTACCTGAACCCCTCTGTCGCCGCCCTGCTCAAACACATGCTGCAGGTGGATCCCATGAAGAGAGCCACCATCAAAGAGATCCGAGAGGATGAATGGTTCAAAGAGGAGCTCCCCAAGTACTTGTTCCCAGAGGACCCGTCCTACAGCAACAACATGATTGATGACGAGGCCCTGAAGGAGGTGTGTGAGAAGTTTGAGTGCACTGAGGAAGAAATCCTGACTTGCTTGTACAGCCGCAACCACCATGACCCCCTGGCTGTGGCCTACCACCTCATCATCGACAACCGCCGCATCATGTCCGAGGCCAAGGACTTCTACCTGGCCTCCAGTCCCCCAGACTCCTTCTTGGACGATCAGCACCTGACCGCCTCTGCCGCGGCTGCCGCAGGCCTTAAGCCCCACCCCGAGCGCATGCAGCCATTCCTGGCAGTGGAGACCCCTCCCAGGCCGAGGCACACGCTGGATGAGCTGAACCCACAGAAATCGAAGCACCAGGGGGTGAGGCGGGCTAAGTGGCACCTGGGGATCAGGAGCCAGAGCAGGCCAAATGATATTATGTCTGAGGTGTGCCGGGCCATGAAGCAGCTGGACTACGAGTGGAAGGTGGTGAATCCGTACTACCTGCGTGTAAAGAGGAAGAACCCAGTGACGGGCATGCAGACCAAGATGAGCCTTCAGCTCTACCAGGTGGACAGCAGGACCTACCTCCTGGACTTCCGTAGCATAGACAATGACATGTTGGAGGCTAAATCTGGGACTGCCACTCCTCACCGGTCTGGGTCAGTGGGAAACTACCGCACGGCCCTTAAGAACGACACTGCTGAAGAGGGGGGGTCCCAAACCGAGGAGGCTAAGGACGACGCTACCCTGACCCCtgccacctccatccctcccaccccCACCAAGGCCTCGGAGAGCTCCCTGGCCTCCTCGCTCACCTCCTCTGTTGACTCAACAGGAGGTGACCTCGCTCCGACGACAGTCTACCCGCGGCCCGGCAGCCACACCATTGAGTTTTTTGAGATGTGCGCCAATCTCATCAAGCTACTTGCACGATAGCTCACAATCAAGTCAAAACATTAGCCTTTTTTTCTCTCCGAGTGTCCTTATAAGCAATAAGCATACAACCGATTCATGGCTCAATTCATCCCCACCTCGGGCGGTTGAGCTGGCTAGGGTTGTTCCATGGCACTGATGATGCAGATTTGGTTTGCACCTACCCTGactcacggggggggggggggggggggggggggggggttggttgtCAGAGCAGAGGTGCGGCGGGGTTTAGAGAACGTTGAATGACAATGACCAAACCACTTTATTATATTCATGATGACAGAATACTATTTTAGAGATGGTTTTACATTTTCACGATCATTTTAGTTGGCAGACGATGATTTCTTCCTCCTTTTAGATCACATTCCACCCTTACATATATAGGCTAAGTCTGAATGATACACTGAATTTGCTTTACTGTACTCACTgggctttgttgtcctttttcCAGTAGAGAAAACAAAACCCCAAGTTTTTCTGTGCAGAAAAGAGAgctatagggggggggggtagggtggCTGAGGGGAAGGAGGCACTTTTGCTAAGTAGTTTTCTTatttctgtcctgctctgtctgtttctctacagTAGATGTCTGAGAACATGTGCAGAAAGACAGGAAGCTGAACTGCAGGCCTTTCAGGGTTAGCTGCACTGACCATAACAAGGGTTGTCGTGCCAACGATGCCCGTTGACTCACTGAGGAAGTGCAATGACCCTGTATATTTCTTACTCGATCGCGTCAGGTGGAAGAAAGGAGTTAGCACTTAATCCAAATTTTTGTTTAATGTTTTTTGTTAATTGAATTAAGACGTCCATGTTTTTTCTCattattgtaaaaaaataaatgtttggaTTTGTTTGTCCTCtacattttatatataaataaaaaatacatttggatATATTTATCAGTGCTTTAAGTGGGAATTGTAGATTATATTGAGAATTGATTATGGAGTGAAATCTTTCTTGAATTTTTTGCATTACGACTATTGCTGGATGACATTTTATTCCTTTTACtgctttcttaaaatcaatttcACTGTTTTTAATCAGTTATTCCTCACTATCTCCAAGAGTTCTTTGCTGTTAGTCAAAATGAGACGTACACTATCCTATACTTAATTCAAAAGTACTTTACCAATTTATCTTTGAGGTTGAGGGCTATATACATTTATACATCTGAATATCTCTTGACTGAGTGACATGCCTTTTAGCAGGATTTGATCAACATTCAGTTTGTACACATGCCTATTCATCGAGTTACACATTGAGAAATTGGGACCATTGAGTGGTGATTTGACACAAGTACATGTGCATGGACAATGTAAATTGATAAAGGAAACAATCACAACAACAATCATTTCACTTTTCTTGGCCCACAATAGATAACTTTGGATGTAAGTTTACATATTTTCCCAAACCTTACATTTATTTAATGTGCTCCtggagaatgtttttttttttttttacattttatcttGAGTGTCAAGACGGAGATTGAATGAGAGTTATTGTCACTTCGATTGCATCGTTCTGTTGGCTGCCTTATCATTATCAGTACTGTTGATCAGTTTTATATCAGTGAATATAAAAACATCTATCTACTTCTATCCTCTTATGTGGGGCTGGTATTGGTCTGAATAAATGACGCGATTGGATTGTGACTGCAAGGTCTAATTTGTAGACCAAATTATAATTAAAACATTTgtaggactaaaaacaaacttttttttttttgttttcaaaGACCGTTGCAAGTTGTATTCCAAATAATGCATACGGTGAATTGTGGGGTTGTTTGAAATAAGTTAGTGTGAGACCATGCTCTTCTAACGGCTTACTGAGGAAGTGCAATTgccctgtgtctttctctctcaaccATGTTCTAACGGCTTATGATGTAAGTTGCACATTTGGTGAGTAGTTTTTCTCCTTTTGAGTGGGAGTGTTAAGAGCTGACTATTTGCAGGAGAAATCTCTTTAATTGTATTTGTATTAACTGCTTTAATTAAGAAATCTTGTTTTAATTTTATTTGGTGTGTAAAGGGACCTTCCTACTATAATGACCGTGTATCAAATGGACAGTCTGTTTAAATCATTTGTACACACAACTGCCTAATAAACAGCAAAATTGCACAGGT

Function

symbol description
prkaa1 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within negative regulation of hh target transcription factor activity. Predicted to be active in nucleus. Is expressed in several structures, including axis; digestive system; margin; mesoderm; and nervous system. Human ortholog(s) of this gene implicated in Huntington's disease; breast cancer; and colon cancer. Orthologous to human PRKAA1 (protein kinase AMP-activated catalytic subunit alpha 1).

NR:

description
5'-AMP-activated protein kinase catalytic subunit alpha-1-like

GO: NA

KEGG:

id description
K07198 PRKAA, AMPK; 5'-AMP-activated protein kinase, catalytic alpha subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602044.2 True 4329 mRNA 0.45 9 19561879 19580316

Neighbor

gene id symbol gene type direction distance location
LOC110523384 LOC106568686 coding downstream 2125 19507723 ~ 19559754 (-)
LOC110523380 LOC106568716 coding downstream 133065 19396185 ~ 19428814 (-)
LOC110523379 LOC106568729 coding downstream 186644 19363387 ~ 19375235 (-)
LOC110523375 LOC106568736 coding downstream 226855 19214846 ~ 19335024 (-)
LOC118964778 NA coding downstream 357213 19204538 ~ 19204666 (-)
LOC110523387 LOC106562971 coding upstream 9828 19590144 ~ 19618069 (-)
LOC110523381 LOC106568667 coding upstream 40709 19621025 ~ 19825534 (-)
LOC110523392 NA coding upstream 463927 20044243 ~ 20051842 (-)
LOC110523394 LOC100194676 coding upstream 1263075 20843391 ~ 20851224 (-)
LOC110523399 LOC106568557 coding upstream 1427609 21007681 ~ 21018966 (-)
G375821 NA non-coding downstream 65421 19495942 ~ 19496458 (-)
G375720 NA non-coding downstream 72157 19489521 ~ 19489722 (-)
G375711 NA non-coding downstream 76505 19485149 ~ 19485374 (-)
G375683 NA non-coding downstream 95293 19466309 ~ 19466586 (-)
G375678 NA non-coding downstream 98856 19462761 ~ 19463023 (-)
G375817 NA non-coding upstream 9579 19589895 ~ 19590137 (-)
G376129 NA non-coding upstream 248921 19829237 ~ 19829453 (-)
G376241 NA non-coding upstream 332903 19913219 ~ 19913484 (-)
G376246 NA non-coding upstream 334875 19915191 ~ 19915408 (-)
G374786 NA other downstream 1002712 18558140 ~ 18559167 (-)
G374189 NA other downstream 1558709 18002820 ~ 18003170 (-)
LOC110523354 LOC106569496 other downstream 2040392 17483696 ~ 17521507 (-)
G373228 LOC106569424 other downstream 2436072 17124037 ~ 17125807 (-)
LOC110523341 LOC106569324 other downstream 2619688 16909582 ~ 16942359 (-)
G377800 NA other upstream 1113780 20694096 ~ 20694708 (-)
G377809 LOC106568602 other upstream 1124297 20704613 ~ 20705140 (-)
G377991 NA other upstream 1449142 21029458 ~ 21029783 (-)
G378359 NA other upstream 2211346 21791662 ~ 21791993 (-)
LOC110523434 LOC106567989 other upstream 2596949 22177265 ~ 22179322 (-)

Expression


Co-expression Network