LOC110523393 (LOC106568920)


Basic Information

Item Value
gene id LOC110523393
gene name LOC106568920
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20390530 ~ 20414156 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602055.2
TCCGACCTACCTGTCACTGCACTTATCTATCCACAACAATGTGGCTTCACCAGCAGAAAAGTTCACCTTTGCAGATTTAGCACATTAAACATAGACTATTATTCACAAGAAATGGGCAACGGACTATGAAGCGAGAACTTTATTGGTGAGGGTATAAGCGCATAGCTGCTTATAgatcctctccaccctctccagtTCAAGTTGAGCGCACAAGATGccatctgttctctccctctcaaacccgGGCCTGACAGTCTGAATAACTATTGGTCGGAATGACGTTTGTTGCTGGCAGTAAAATGGACTTCCTGTCCCCGCGATATCACAAGCAGTCCCTAGCTCAAACTCTCTGTCGTTTTGGATTGTTCGTGATCTGTATGgGAATGGTGTTGACCATGTCTATGTATCCCATGCTGAGGTTCCTGGGTGGAAAGCTCCATTCTTCCTTTACAGGGAGCTATCTACCTGGACACCACTCTGTGCTCCTCGTCAACTGCCCCAACGAACAGACAGCCAAGGACATCGGCCGAGCCATtatggagaggaggatggcagcaTGCATCAATATTCTGCCCAGGACCTCCACCATGTATTACTGGAAAGGGGAGATTCAAGATGCGACGGAAATTCTGATGTTGGTGAAGACGAGGACCTCGAAGACCCAAAGGCTCATAGACTATGTCAAGTCTGTGCATCCCTATGAGACTCCAGAGGTGCTTAGTTTCCCTGTGGAGGACGGGAGCCTGCCCTATTTGAAGTGGGTGGATGAGGCTGTTCCTGACGACTGACCAATGAGGGAGAATATCCTCAATGACTTGTGATCTTATTGGACGTGAATCTCCAATCTATTGGTTAACTGGAGAGTAAGGTTGGCTGGGAACCAGCAAGCTTTGGATTGGCTTGAGGGGTTCCAAGTTCAAACTCTTGCTTTTGAACTTGACCCACAAATGCTAAATGTTTAGCTCCTCCCACCATAACATTGATATTGACTCAgagttgttttggctctgttttATACAGGTCCTGTTGTTGCCATTGAAATTCCGAGCTTGACATGACCTCTAACGTTCAATGTCAGTTTGTCAGAGCTGAAAGAGTTTGTAGCTCCAGATCTGCATATAATTATCTCGAAAAAACATTAAACATTAAATAATAATATTCAGTGTTGATTCAAGGTATTAGTTACATTAGACTGTTTATTTAAAATAATTTATATTGCATTGTATTCCTAAAACATCAGATTCATATTCTGTTATATTAAATCACATTCCTTTTACTTATCTGGTTTCTCTCTAGATGACAGAGCACCCCTGTTTACCGTTTCACTGTGAACCAAAAAGTTGATTGCACTGCATTTTGAGAGGGAATCTTGAACACTGTTTGAGATTTGTGTTCTAAGGATAACTTTTTGTAATATATGATGGCACAAATGCGTTCCTTATTCCTTAAAGTGATacatacagtttaagtcggaagtttacatacaccttaaccaaatacatttcaactgtttttcacaat

Function

NR:

description
protein CutA homolog

GO: NA

KEGG:

id description
K03926 cutA; periplasmic divalent cation tolerance protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602055.2 True 1521 mRNA 0.42 6 20390530 20414156

Neighbor

gene id symbol gene type direction distance location
LOC110523391 LOC106568645 coding upstream 8911 20051393 ~ 20381619 (+)
LOC110523383 LOC106568686 coding upstream 881465 19499604 ~ 19512291 (+)
LOC110523377 LOC106568724 coding upstream 1026441 19358271 ~ 19364089 (+)
LOC110523370 fa69b coding upstream 1812302 18558152 ~ 18578228 (+)
egfl7 LOC106568866 coding upstream 1884388 18487620 ~ 18506142 (+)
LOC110522816 LOC106568602 coding downstream 93918 20508074 ~ 20759255 (+)
LOC110522817 LOC106568462 coding downstream 416955 20831111 ~ 20842676 (+)
pnx LOC106568480 coding downstream 444186 20858342 ~ 20859762 (+)
LOC110522818 LOC106568484 coding downstream 467782 20881938 ~ 20897867 (+)
LOC110523395 LOC106568500 coding downstream 483965 20898121 ~ 20910637 (+)
G376864 NA non-coding upstream 775 20389505 ~ 20389755 (+)
G376862 NA non-coding upstream 1930 20388265 ~ 20388600 (+)
G376859 NA non-coding upstream 2825 20387280 ~ 20387705 (+)
G376857 NA non-coding upstream 6206 20384026 ~ 20384324 (+)
G376536 NA non-coding upstream 54950 20310816 ~ 20335580 (+)
G376867 NA non-coding downstream 6774 20420930 ~ 20421730 (+)
G376938 NA non-coding downstream 46848 20461004 ~ 20461340 (+)
G376972 NA non-coding downstream 89865 20504021 ~ 20504333 (+)
G376976 NA non-coding downstream 98647 20512803 ~ 20513129 (+)
G376978 NA non-coding downstream 100585 20514741 ~ 20514942 (+)
G376320 NA other upstream 406682 19983261 ~ 19983848 (+)
arhgef28a LOC106568988 other upstream 2307165 18067350 ~ 18177035 (+)
G373726 NA other upstream 2682773 17704113 ~ 17707757 (+)
G372618 LOC105030512 other upstream 3508345 16870434 ~ 16882185 (+)
G372373 NA other upstream 3652030 16735642 ~ 16738500 (+)
G377022 NA other downstream 177324 20591480 ~ 20596863 (+)
LOC110523400 LOC106568542 other downstream 694013 21108129 ~ 21160149 (+)
G378660 NA other downstream 1758379 22172535 ~ 22231920 (+)

Expression


Co-expression Network