LOC110522817 (LOC106568462)


Basic Information

Item Value
gene id LOC110522817
gene name LOC106568462
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20831111 ~ 20842676 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977023.1
TGTAGACAAATATGTTGCCAATAACATTCAGTTTCTAACACTCCCTCTCGACAGATTAGTGACGCAAACTTTATCGCACTTTTTAAAAGAATAGGCTACATCGTTTTTACATGTTCAGTATTTTGTTTACTAACACTTTCATTTATATATGGAATCTATCTTGGCTTGAGAAAGAGAACCAGACTGACTGTACATCTTCTGGGGGATGGTTAAACCTGTCTTTGAAGACGGATTTTTTGAATaaggaaaaggagagaaaaaCGAAAGTTGTTCCAGTtgtgatttgttgttgttgtatggtCCACATCCCTCTGCAGCAATGGAGATAGATAGTATGGTGGCGAACAGCGCACTCATCAGAGCCAGAGGAGGTGGAGGGGGAAAAGGCAGGAGTTGGAAATGGAAAGACATGCTGCGCTTCCCTCACATCAGCCAGTGTATGGAGCTGGCAAAAACCCtcgagcgaGACTACTACAGTCTGTGTGTGAAGCAGCCTATCGGCAGACAACTATTCCGTCTCTTCTGTCAGAGCAAACCTGAGCTGCGGCACTGCAACTCCCTATTGGACAAAATGGGGGAGTATGAGGTGAAGTCAGATGAGGAGAAGATGAGTTTTGGCATGCAAATCATTAACAGGTTCCTCAGTAGACAGTCATCTGAGTGTGTACAGGTAGTAGAGCGCTATGGTGAGAAGTGTAGGGAGAGTCTGGAGGAGCAGCACAGTAGAGAAGTCTTCATTGACTgcacagaTGACCTCCATGAGTACCTGAGCGGTGCCCCCTTCCTTCAGTACCAGCAGAGCATGTACTTTGACCGTTTCCTGCAGTGGAAGATGGTAGAGAGACAGCCTGTTACCAAACACATCTTCAGACAGTACAGGTTGCTTGGCAAGGGAGGCTTCGGGGAGgTGTGGGCATTCCAGGCACGTGCCTCTGGGAAGATGTATGCGTGTAAGAAGCTGGAGAAGACTCACGTGaagaaggggaaaggagaggccATGGCCCTCAATGAGAAACAGATACTAGAGACACTTAACAGCAGATTTGTGgtcaGTCTGGCGTACGCGTATGAAACCaaacagtctctctgtctggtgcTGACCATAATGAACGGAGGAGACCTGCGGTTCCACATCTATAACATGGGTACTTCAGGCCTGGAGCAGGACAGGGTTCAGTTCTATGCTGctgaggtctgctgtggtctccaccacctccaccagatGAACAttgtctacagGGATCTAAAACCAGAGAACATCCTTCTGGATGACAACGGGCACATCCGTATCTCAGACCTGGGCCTGGCGGTGACACTATCTGAGGGGAATCTGGTACGAGGCAGGGTGGGCACCCTGGGATACATGGCTCCAGAGGTGATTGGCAACGACTACTACGGGTTGAGCCCTGATTGGTGGGGCCTGGGCTGCCTTGTGTACGAAATGACGGCAGGACGATCCCCATTCAAGAGAAAGGGGGAGCGATTGATaggaaaggagatggagagaaggatacaggaggaggaggaggagtacggAAAGATATTTAGCAACGAGACGAAAGACTTCTGTCGCTTGCTGTTGACTAAAGACCCAAGACATAGGCTGGGGTGTCAGGGGAGTGGGGTGTATGGGATTAAGTCCCATCCCTTCTTCAGAAACATCAACTTCAGGAGGTTGGAGGCCGGAGTCATTGAGCCACCCTTCAAACCGGATCCCAGAGCAGTGTACTGCCAGGATGTTCAGGACATTGATGAGTTctccacagtaaaaggagtcaTTTTGGAGAGGGCAGACAACGACTTCTACATCAAGTTTAACACAGGCTCCGTGGCCATACCCTGGCAGACAGAGATGATAGAGATGGGTTGTTTCAAGGAGCTGAATGTGTTCGGGCCTCAGGGTTCCAGACCCCCTGACCTGGACTGGACCCAGACCCCTGCCCCACTGAGCCCCAAACGCAGCCTGCTGGACCGCTTATTCCGCAGACATCATTCAGAGGAGTCAGGCAGCAGAAGACACAAGTCAGACAGCAGCACCATGGACTCAGCTAGCCTGCTCAGCACTACAATCTAGTGGTGGAGGCACAGCACTACAGCCAATGGACTAAAGCCAAAGCTGCAACAGACGTTAGAGTGCCTGGGCCATTCCATCTATCGTTCACCAGCTCAGGCCAAAGAGACCACCCCCGTACTATCATCCAGGAGGTGGTCATCTTATTTCTGCATGAGTCAGATCAGAGAGAACCTCAGCTAAGATTGTTCTGATTTTGTACCCGTGTGTTTACGTAACCTTAGTATAAAAACCTTTAAAACAAATCTTTCCAAATCTTTACTTTATTA
>TU428679
TATGGAATCTATCTTGGCTTGAGAAAGAGAACCAGACTGACTGTACATCTTCTGGGGGATGGTTAAACCTGTCTTTGAAGACGGATTTTTTGAATaaggaaaaggagagaaaaaCGAAAGTTGTTCCAGTtgtgatttgttgttgttgtatggtCCACATCCCTCTGCAGCAATGGAGATAGATAGTATGGTGGCGAACAGCGCACTCATCAGAGCCAGAGGAGGTGGAGGGGGAAAAGGCAGGAGTTGGAAATGGAAAGACATGCTGCGCTTCCCTCACATCAGCCAGTGTATGGAGCTGGCAAAAACCCtcgagcgaGACTACTACAGTCTGTGTGTGAAGCAGCCTATCGGCAGACAACTATTCCGTCTCTTCTGTCAGAGCAAACCTGAGCTGCGGCACTGCAACTCCCTATTGGACAAAATGGGGGAGTATGAGGTGAAGTCAGATGAGGAGAAGATGAGTTTTGGCATGCAAATCATTAACAGGTTCCTCAGTAGACAGTCATCTGAGTGTGTACAGGTAGTAGAGCGCTATGGTGAGAAGTGTAGGGAGAGTCTGGAGGAGCAGCACAGTAGAGAAGTCTTCATTGACTgcacagaTGACCTCCATGAGTACCTGAGCGGTGCCCCCTTCCTTCAGTACCAGCAGAGCATGTACTTTGACCGTTTCCTGCAGTGGAAGATGGTAGAGAGACAGCCTGTTACCAAACACATCTTCAGACAGTACAGGTTGCTTGGCAAGGGAGGCTTCGGGGAGgTGTGGGCATTCCAGGCACGTGCCTCTGGGAAGATGTATGCGTGTAAGAAGCTGGAGAAGACTCACGTGaagaaggggaaaggagaggccATGGCCCTCAATGAGAAACAGATACTAGAGACACTTAACAGCAGATTTGTGgtcaGTCTGGCGTACGCGTATGAAACCaaacagtctctctgtctggtgcTGACCATAATGAACGGAGGAGACCTGCGGTTCCACATCTATAACATGGGTACTTCAGGCCTGGAGCAGGACAGGGTTCAGTTCTATGCTGctgaggtctgctgtggtctccaccacctccaccagatGAACAttgtctacaggtcagtagacACTGGCTCCATCC

Function

NR:

description
PREDICTED: G protein-coupled receptor kinase 6-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977023.1 False 2340 mRNA 0.49 16 20831111 20842676
TU428679 True 1115 TUCP 0.50 9 20831258 20836559

Neighbor

gene id symbol gene type direction distance location
LOC110522816 LOC106568602 coding upstream 71856 20508074 ~ 20759255 (+)
LOC110523393 LOC106568920 coding upstream 416955 20390530 ~ 20414156 (+)
LOC110523391 LOC106568645 coding upstream 449492 20051393 ~ 20381619 (+)
LOC110523383 LOC106568686 coding upstream 1322046 19499604 ~ 19512291 (+)
LOC110523377 LOC106568724 coding upstream 1467022 19358271 ~ 19364089 (+)
pnx LOC106568480 coding downstream 15666 20858342 ~ 20859762 (+)
LOC110522818 LOC106568484 coding downstream 39262 20881938 ~ 20897867 (+)
LOC110523395 LOC106568500 coding downstream 55445 20898121 ~ 20910637 (+)
ccar2 LOC106568504 coding downstream 80338 20923014 ~ 20944043 (+)
LOC110523398 LOC100534606 coding downstream 109473 20952149 ~ 20991376 (+)
G377125 NA non-coding upstream 70626 20759746 ~ 20760485 (+)
G377107 NA non-coding upstream 88468 20709523 ~ 20742643 (+)
G377106 NA non-coding upstream 121966 20708923 ~ 20709145 (+)
G377105 NA non-coding upstream 125214 20705691 ~ 20705897 (+)
G377099 NA non-coding upstream 128897 20697194 ~ 20702214 (+)
G377144 LOC100194676 non-coding downstream 6978 20849654 ~ 20851140 (+)
G377186 NA non-coding downstream 71476 20914152 ~ 20914533 (+)
G377195 NA non-coding downstream 74511 20917187 ~ 20917779 (+)
G377197 NA non-coding downstream 78459 20921135 ~ 20921358 (+)
G377198 NA non-coding downstream 79201 20921877 ~ 20922095 (+)
G377022 NA other upstream 234248 20591480 ~ 20596863 (+)
G376320 NA other upstream 847263 19983261 ~ 19983848 (+)
arhgef28a LOC106568988 other upstream 2747746 18067350 ~ 18177035 (+)
G373726 NA other upstream 3123354 17704113 ~ 17707757 (+)
LOC110523400 LOC106568542 other downstream 265493 21108129 ~ 21160149 (+)
G378660 NA other downstream 1329859 22172535 ~ 22231920 (+)
G378832 NA other downstream 1661076 22503752 ~ 22506270 (+)
G378868 NA other downstream 1759434 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 2099616 22942205 ~ 23007315 (+)

Expression


Co-expression Network