LOC110523394 (LOC100194676)


Basic Information

Item Value
gene id LOC110523394
gene name LOC100194676
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20843391 ~ 20851224 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602056.2
AAtaaactgaccctagatcagcgCTCTTCGTCTAACACCAAAACGTATCGCGAGATGTCATATTTTATTGATTTGAAACATGGCGTCGGAAGGAGAAGCGGCCAATGCTTCTGTTGTTGAACCAGAGACCGGGGACGGTGATGCTGGATTTGGGGACTTGACAGGCAACCTGGAGACTGAGTCATCGAATGGCAAAGAGGCCATGGATCCGGGTAGTGAGGGTTTGGAGGCAGCTGACACCCAGACAGGTTCTGGGGACGAGGAGAGCGGCAGGCACCAGGGAGAGGTGGAGCTGCAGTGTGCTCTCTGTATGAAGTGGTTCACCGCCGACACCTTCAGCATTGACACCGCgacgTGTCTGCCTTTCATGACCAACTATGTTTTCCATTGTAACGTGTGTCATCACAGTGGCAACACCTACTTCCTCCGGAAACAAGCCAACCTGAAGGAGATGTGTCTGACTGCTCTGGCTAACCTCACATGGAGCTCCAGGACTCAGGAGGAGCACCCCAAGACTATGTTCTCCAAAGACAAGGACATCATCCCGTTCATTGATAAGTACTGGGAGTGTATGACCACCCGACAGAGACCTGGAAAACTTACATGGCCCAACAACCTAGTCAAGACCATGAGTAAAGAGCGGGATGTGTTCTTGGTGAAGGAGCACCCAGACCCAGGCAGTAAGGACCCAGAGGAGGACTACCCCAAGTTTGGCCTGCTGGACCAGGACCTGGGCAACATTGGACCGTCTTACGACAACCAGAAACAGACCACCGCTGCTCCCACTCCCGGAGGGCTCAACGGTGGACCTTCTTTCTCAGgTGGTCTGGCCCCTGGCCCAGGTAAAGGTAGAGGAGCCAAGCgtaagcagcagcagcaacaacaggaGGGCGCCACAGCTGGAGCAGCTAAGAGAACACGCAGtgACCCTCTGTTCTCGGCCCAGCGTCTTCCTCCCCATGGCTACCCTCTGGAGCACCCCTTCAACAAAGATGGCTACCGCTACATCCTAGCAGAGCCAGACCCCCACGCCCCCgacccagagaaactagagctgGACTGCTGGGCTGGGAAACCCATCCCCGGAGACCTCTACAGAGCCTGTCTCTACGAGAGAGTACTGCTAGCCCTGCACGACAGAGCCCCACAGCTGAAGATCTCAGATGATCGTCTGACAGTGACAGGGGAGAAGGGTTACTCCATGGTCAGAGCCTCCCACGGTGTCAGGAAAGGATCCTGGTACTTTGAGGTCTCCATCGATGAGATGCCCCCGGACACCGCAGCCAGACTGGGCTGGTCTCAGCCTCTGGGTAACCTGCAAGCCCCCCTGGGCTATGATAAGTTCAGCTACTCATGGCGTAGTAAGAAGGGGACACGGTTCCACCAGTCTGTAGGGAAACACTACTCCTCAGGCTACGGACAGGGAGACACGCTGGGCTTCTTCATAGAACTACCAGATGGCACTGAGACAGCCAAGGCACTGCCGGACACTTACAAGGACAAGGCGCTGATTAAGTTTAAGAGCTACCTGTACTTTGAGGAGAAGGACTATGTGGACAAGGCAGAGAAGAGCCTGAAGACTGTTACCCCCAGCAGGaTGCTGTTCTATAAGAATGGGGTTAACCTGGGTCTGGCCTATGAAAACCTGTTTGAGGGTCTCTACTTCcctgccatctctctctaccgGGGCTGTACGGTTTCAGTTAACTTTGGACCACTTTTCAAACACCCTCCAAAAGACATCAAGTACCAGCCAATGAGTGATATGGGCTGGGGAGCGGTGATCGAACATACACTGGCTGACATGTTGTATCACGTAGAGACGGACGTAGACGGACGACGTAGCCCTCCCTGGGAAGGATAAACGCACACCTCCAgagatcaacacacacacagatggccaGTTGAGTGTTTGGACAGGCATGGAGGAGTCCATTCCATCATTTATAGGTGGGTTGATGTCAACCTGAACATGAACACTTTGCAGTCTCTCTGTGGTGTCCCTTAAACATTGTCATTGGTAATTTAAATCAGCTGTACCCTTCTATTGAACAAGATGTGTGTGATCTAAAATGAGACTTGCTTGTCTGAACAACTCTTTTTGGTGTATGAAGCACTTTAGGTGTTCCAGCACTATAAAATAATGTATGTATGGACAAATTCAAATTCATTGTCCATTTTTGTCAAACACCCCAGATATTCTTAGTTCCAGATATTATTTCTTCAAGCAAATGAACATATTCTGTTTTTATTCATTTCCTGCCAGCTGGTCTCAAGCTAGGGTTCCATACTATTGGCCACAGATCTTCATGCAAATATGATACAAATCTGACTGGTTGCGAATTAGTCTGCGTGgcgacgtagtgcacataaaaataacttttgtgGTTAAATTCCTATGTACCGAATAAAAACCAAAATcaa
>XM_021602057.2
AAtaaactgaccctagatcagcgCTCTTCGTCTAACACCAAAACGTATCGCGAGATGTCATATTTTATTGATTTGAAACATGGCGTCGGAAGGAGAAGCGGCCAATGCTTCTGTTGTTGAACCAGAGACCGGGGACGGTGATGCTGGATTTGGGGACTTGACAGGCAACCTGGAGACTGAGTCATCGAATGGCAAAGAGGCCATGGATCCGGGTAGTGAGGGTTTGGAGGCAGCTGACACCCAGACAGGTTCTGGGGACGAGGAGAGCGGCAGGCACCAGGGAGAGGTGGAGCTGCAGTGTGCTCTCTGTATGAAGTGGTTCACCGCCGACACCTTCAGCATTGACACCGCgacgTGTCTGCCTTTCATGACCAACTATGTTTTCCATTGTAACGTGTGTCATCACAGTGGCAACACCTACTTCCTCCGGAAACAAGCCAACCTGAAGGAGATGTGTCTGACTGCTCTGGCTAACCTCACATGGAGCTCCAGGACTCAGGAGGAGCACCCCAAGACTATGTTCTCCAAAGACAAGGACATCATCCCGTTCATTGATAAGTACTGGGAGTGTATGACCACCCGACAGAGACCTGGAAAACTTACATGGCCCAACAACCTAGTCAAGACCATGAGTAAAGAGCGGGATGTGTTCTTGGTGAAGGAGCACCCAGACCCAGGCAGTAAGGACCCAGAGGAGGACTACCCCAAGTTTGGCCTGCTGGACCAGGACCTGGGCAACATTGGACCGTCTTACGACAACCAGAAACAGACCACCGCTGCTCCCACTCCCGGAGGGCTCAACGgTGGTCTGGCCCCTGGCCCAGGTAAAGGTAGAGGAGCCAAGCgtaagcagcagcagcaacaacaggaGGGCGCCACAGCTGGAGCAGCTAAGAGAACACGCAGtgACCCTCTGTTCTCGGCCCAGCGTCTTCCTCCCCATGGCTACCCTCTGGAGCACCCCTTCAACAAAGATGGCTACCGCTACATCCTAGCAGAGCCAGACCCCCACGCCCCCgacccagagaaactagagctgGACTGCTGGGCTGGGAAACCCATCCCCGGAGACCTCTACAGAGCCTGTCTCTACGAGAGAGTACTGCTAGCCCTGCACGACAGAGCCCCACAGCTGAAGATCTCAGATGATCGTCTGACAGTGACAGGGGAGAAGGGTTACTCCATGGTCAGAGCCTCCCACGGTGTCAGGAAAGGATCCTGGTACTTTGAGGTCTCCATCGATGAGATGCCCCCGGACACCGCAGCCAGACTGGGCTGGTCTCAGCCTCTGGGTAACCTGCAAGCCCCCCTGGGCTATGATAAGTTCAGCTACTCATGGCGTAGTAAGAAGGGGACACGGTTCCACCAGTCTGTAGGGAAACACTACTCCTCAGGCTACGGACAGGGAGACACGCTGGGCTTCTTCATAGAACTACCAGATGGCACTGAGACAGCCAAGGCACTGCCGGACACTTACAAGGACAAGGCGCTGATTAAGTTTAAGAGCTACCTGTACTTTGAGGAGAAGGACTATGTGGACAAGGCAGAGAAGAGCCTGAAGACTGTTACCCCCAGCAGGaTGCTGTTCTATAAGAATGGGGTTAACCTGGGTCTGGCCTATGAAAACCTGTTTGAGGGTCTCTACTTCcctgccatctctctctaccgGGGCTGTACGGTTTCAGTTAACTTTGGACCACTTTTCAAACACCCTCCAAAAGACATCAAGTACCAGCCAATGAGTGATATGGGCTGGGGAGCGGTGATCGAACATACACTGGCTGACATGTTGTATCACGTAGAGACGGACGTAGACGGACGACGTAGCCCTCCCTGGGAAGGATAAACGCACACCTCCAgagatcaacacacacacagatggccaGTTGAGTGTTTGGACAGGCATGGAGGAGTCCATTCCATCATTTATAGGTGGGTTGATGTCAACCTGAACATGAACACTTTGCAGTCTCTCTGTGGTGTCCCTTAAACATTGTCATTGGTAATTTAAATCAGCTGTACCCTTCTATTGAACAAGATGTGTGTGATCTAAAATGAGACTTGCTTGTCTGAACAACTCTTTTTGGTGTATGAAGCACTTTAGGTGTTCCAGCACTATAAAATAATGTATGTATGGACAAATTCAAATTCATTGTCCATTTTTGTCAAACACCCCAGATATTCTTAGTTCCAGATATTATTTCTTCAAGCAAATGAACATATTCTGTTTTTATTCATTTCCTGCCAGCTGGTCTCAAGCTAGGGTTCCATACTATTGGCCACAGATCTTCATGCAAATATGATACAAATCTGACTGGTTGCGAATTAGTCTGCGTGgcgacgtagtgcacataaaaataacttttgtgGTTAAATTCCTATGTACCGAATAAAAACCAAAATcaa

Function

NR:

description
set1/Ash2 histone methyltransferase complex subunit ASH2-like isoform X2

GO: NA

KEGG:

id description
K14964 ASH2; Set1/Ash2 histone methyltransferase complex subunit ASH2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602056.2 False 2424 mRNA 0.51 17 20843391 20851224
XM_021602057.2 True 2406 mRNA 0.51 16 20843391 20851224

Neighbor

gene id symbol gene type direction distance location
LOC110523392 NA coding downstream 791549 20044243 ~ 20051842 (-)
LOC110523381 LOC106568667 coding downstream 1017857 19621025 ~ 19825534 (-)
LOC110523387 LOC106562971 coding downstream 1225322 19590144 ~ 19618069 (-)
LOC110523382 prkaa1 coding downstream 1263075 19561879 ~ 19580316 (-)
LOC110523384 LOC106568686 coding downstream 1283637 19507723 ~ 19559754 (-)
LOC110523399 LOC106568557 coding upstream 156701 21007681 ~ 21018966 (-)
LOC110522820 LOC105889199 coding upstream 309057 21160281 ~ 21162494 (-)
LOC110523403 ubb coding upstream 321420 21172644 ~ 21175591 (-)
tpst2 LOC106568446 coding upstream 324924 21176148 ~ 21182983 (-)
LOC110522821 LOC106568453 coding upstream 332463 21183687 ~ 21271783 (-)
G377850 NA non-coding downstream 35792 20798314 ~ 20807599 (-)
G377849 NA non-coding downstream 38562 20798872 ~ 20804829 (-)
G377858 NA non-coding downstream 61399 20781715 ~ 20781992 (-)
G377857 NA non-coding downstream 61848 20781318 ~ 20781543 (-)
G377856 NA non-coding downstream 62184 20780986 ~ 20781207 (-)
G377890 NA non-coding upstream 839 20852063 ~ 20852269 (-)
G377895 NA non-coding upstream 8845 20860069 ~ 20860378 (-)
G377907 NA non-coding upstream 62938 20914162 ~ 20914572 (-)
G377934 NA non-coding upstream 64144 20915368 ~ 20915590 (-)
G377935 NA non-coding upstream 70133 20921357 ~ 20921802 (-)
G377809 LOC106568602 other downstream 138251 20704613 ~ 20705140 (-)
G377800 NA other downstream 148683 20694096 ~ 20694708 (-)
G374786 NA other downstream 2284224 18558140 ~ 18559167 (-)
G374189 NA other downstream 2840221 18002820 ~ 18003170 (-)
LOC110523354 LOC106569496 other downstream 3321904 17483696 ~ 17521507 (-)
G377991 NA other upstream 178234 21029458 ~ 21029783 (-)
G378359 NA other upstream 940438 21791662 ~ 21791993 (-)
LOC110523434 LOC106567989 other upstream 1326041 22177265 ~ 22179322 (-)
jmy LOC106568093 other upstream 1948476 22799696 ~ 22859199 (-)
LOC110522831 LOC106563032 other upstream 2695976 23488916 ~ 23556681 (-)

Expression


Co-expression Network