LOC110522818 (LOC106568484)


Basic Information

Item Value
gene id LOC110522818
gene name LOC106568484
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20881938 ~ 20897867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977024.1
AGCCAAGAAGCAGAAAGCCAACAAGGCGCCCAAAGCCCCGAAACCCACTAAAAAACCCAAAGCCACCAAGGCACCCAAGAAGCTCAAAGCCACCAAGGCACCTAAGGTCACAAAGCCCAAAGCTACCAAGGCCTCCAAGACAACAGcatggaaggaggagggggtgaAGCCGGTGACCAGAAGACCCAgtctggaagaggaggaggagaaactcCTGATTGAGCTGGGCTGGGATAGacACAGCAGACCCTCaggacacacacctctctctgctGGCTCCAAGACCCTGACAGAGCATGGTCAAGATTACTGGGACACCAAGCtggacagagagaggactaCCACTGAGGTCATCATGTATGTATCAGAGGAAACCACAGTGCCCTGGTACGAAGAGTATGATTATGCAGACTtggcAGCTAAACAACTcaaggaggaggcagagaaagcTCGCAAGGAGAAGGAGGAAAAAGTGAAGCGGCTGAGGAAGAagtgggaggaggaagaggaggagaggctgaggaAGATTCCAGTACATGCCGAACCCAAGAAATGCCCTCCTCTAGGTCTGGAGTCCCATCGTGTTGACGATGACCAGCTGCTGGCCTCTTCTCAGTCTCACCACGGCTTCTCTGCTCAGCGGGGCAGGCTCAACATGCAGAGCTCTGGTAATGAGGAGGGTGTGTACGGGGGTGCGTGGTGTGCTGAGCCAGAGGAGAAGAACCACTGGTTTGAGGTGGACGCTCGCAGAGAGGTGGAGTTCACTGGAGTCATCGTACAGGGCAGGAACTCAGACACAGCgGAAGATTTTGTGTCCACGTTCTACGTGTCCTTCAGTAATGACAGTCGTGATTGGACGGTGCTCCATGATGGCTATGCTGAGTGGttgtTCTATGGGAATGTGGATAGGGACTCTCCAGTGATGGTGCAGTTTGATTGGCCAACCGTGGCACGTTACATCCGTGTCCTTCCCCAGAGCTGGAACGGCAGCCTGTGTCTCAGAGTTGAGGTCATGGCCTGCCAACTGACCAGCAGCTTCCGTAGTGAGAATGAGGTCAACCCCACAGACAACCTTGACTTCAGACACCACAACTATAAGGACATGAGACAGaTGATGAAGGTGATAAATGAGGAGTGTCCTAACATCACTAGGATCTATAACATTGGGAAGAGCTCTGCAGGCCTGAAGATGTATGCCATGGAGATCTCTGACAACCCCGGGGAACACCAgacagGTGAGCCGGAGTTCCGCTACACGGCGGGTCTCCATGGTAATGAGGCACTGGGGCGGGAGCTGCTCCTCCTGCTGATGCAGTTCATGTGTAAGGAGTATAATGAGAACAACCCCAGAGTGCGCCGCCTGGTGGAGGGAGTGAGAATACACCTGGTTCCCTCACTCAACCCAGACGCCTACGAACTGGCCTACGAGATGGGCTCTGAGATGGGGAATTGGGGTCTGGgccactggactgaggagggATACGATATCTTCCAGAACTTCCCGGACCTCAACAGTGTTCTATGGGGGGCAGAGGACAGAGGCTGGGTCCCACGCATTGTACCTAATCACCACATCCCACTCCCAGAGAACTTCCTCAATGGCTCGgttgCCCTGGAAACCAAAGCCATTATTAACTGGATGGAGCGGACCCCATTTGTGTTGGGAGCCAATTTGCAGGGTGGAGAGAAAGTGGTGGCGTACCCGTTTGACATGCAGCGACCTCCAAAGGCTACATGGACTTTGGGGTCTCAGCGTGAGTTGAGACCCGGTGTGAACCATGAGATGAATGAGGAAACGTGGGCCCGGATGCAGCGTCAGAATGGGGACGCGCTACGAGAGACGTCTGACGACACCATGTTCCGCTGGCTGGCCATGTCGTACGCCCACAGCCACCTGACCATGACGGAGACCCAGCGGGGCTCGTGCCACACAGACGACATCTCTGGGGGACAAGGCATCATCAACAGGGCCAGTTGGAAACCTGTGGTGGGAAGTATGAATGACTTCAGCTACCTGCACACTAACTGCTTTGAGCTGTCTGTCTTCCTGGGCTGTGACAAGTTTCCTCATGAGAGTGAGCTTCCTCTGGAATGGGAGAACAACCGGGAGGCACTACTGTCCTTCATAGAACAGGTGCATCGTGGGATAAAGGGCATAGTGAGGGACATGGAGGGTAAACCCCTGGCCAACGCCACCATTTCTGTGGACGGCGTCAAGCACGATGTCAAGACTGCTGCGGCTGGTGACTACTGGCGGTTGTTGAACCCCGGGGAGTACCGTGTGACGGCTCGCGTCGACGGCTACACGCTCCAGACCCGGCTGTGCATTGTGGGCTACGACTCCGGAGCCACCCCCTGTAGCTTCACCCTGGCCAAGTCCAACTGGGACCGAATTAAGCAGATTATGGTCCTCCACGGCAAGAGGCCCATACGGCTTGTTACCAAAGCACCCCCCCGGGTAGGAAGTGACATCAGCGGTGGGTCAGTTGGCAGCGTAGACGCAACAAAGATGGGCGCCACTGGCGGGATGGGCGGGACGTCGGCCAACTCCCATAATGCAGAGCGTCTCCGGCGGTTACGGCTGATGCGCCTGCGCAAGATGCACCAGCAGAGACTCAGGTATAACTTCTCCACCGCCACGCCCGTTGCCACGACGACCACCACGGCGGCCCCCACAACGACAGCGGAGCTGGAGACAGAGAGCACTACTTCCTGGTATGACTCGTGGTTCCCTGTGGAGAGTTCGTACACAGAGCCCACACCTGCCGAGGTCTTCACAGAGATCCAGGAGTCAGAGCCTACACAGGACTACACCTCTGAGTACAAGTTCGAAGATTACTAAGGTGAATTTAATTAAATTGCTAAAGTAACAAATTACAGTTTTTAAAAACACAATCATTATTCAAATTGTGTGAaattaaaaacatatttaattcCTTGCAGAGCTGAAAGAAAATatagcatttaaaaaaaacactttttatAAATAATACTTTCTCTGTGCTCTTCCATTTATGTCTCATGATGGTCTGTATTCTGATATTTTTTGTAATGCTCACACATAGATCAGAGAATAGTCTGCATTCTCTCTCTGCAGAGCAGGGAGTTAACAGCATGTTTTTCATATTATTTACTTAAGCAAGCCTATTCTGAGACGTAGATATAGGGTGCTTCAAATGTTTCACAATAAAAGAGTATAAACAGGTTATTTGACACACGCTGAAGTCATGCTTTGCCTCAAAACGTGGATTCTTATGTTTGGTTAGATATGATTACTAATATCTATGGAAACTGCGGTGTGTTTGTATTATTACATTAAAAGTGTTC

Function

NR:

description
PREDICTED: inactive carboxypeptidase-like protein X2 isoform X2

GO: NA

KEGG:

id description
K21392 AEBP1; adipocyte enhancer-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977024.1 True 3327 mRNA 0.52 19 20881938 20897867

Neighbor

gene id symbol gene type direction distance location
pnx LOC106568480 coding upstream 22176 20858342 ~ 20859762 (+)
LOC110522817 LOC106568462 coding upstream 39262 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 coding upstream 122683 20508074 ~ 20759255 (+)
LOC110523393 LOC106568920 coding upstream 467782 20390530 ~ 20414156 (+)
LOC110523391 LOC106568645 coding upstream 500319 20051393 ~ 20381619 (+)
LOC110523395 LOC106568500 coding downstream 254 20898121 ~ 20910637 (+)
ccar2 LOC106568504 coding downstream 25147 20923014 ~ 20944043 (+)
LOC110523398 LOC100534606 coding downstream 54282 20952149 ~ 20991376 (+)
LOC110522819 LOC106568526 coding downstream 153069 21050936 ~ 21099289 (+)
LOC110523400 LOC106568542 coding downstream 210262 21108129 ~ 21160149 (+)
G377144 LOC100194676 non-coding upstream 30798 20849654 ~ 20851140 (+)
G377143 LOC100194676 non-coding upstream 34998 20800061 ~ 20846940 (+)
G377125 NA non-coding upstream 121453 20759746 ~ 20760485 (+)
G377107 NA non-coding upstream 139295 20709523 ~ 20742643 (+)
G377106 NA non-coding upstream 172793 20708923 ~ 20709145 (+)
G377186 NA non-coding downstream 16285 20914152 ~ 20914533 (+)
G377195 NA non-coding downstream 19320 20917187 ~ 20917779 (+)
G377197 NA non-coding downstream 23268 20921135 ~ 20921358 (+)
G377198 NA non-coding downstream 24010 20921877 ~ 20922095 (+)
G377022 NA other upstream 285075 20591480 ~ 20596863 (+)
G376320 NA other upstream 898090 19983261 ~ 19983848 (+)
arhgef28a LOC106568988 other upstream 2798573 18067350 ~ 18177035 (+)
G378660 NA other downstream 1274668 22172535 ~ 22231920 (+)
G378832 NA other downstream 1605885 22503752 ~ 22506270 (+)
G378868 NA other downstream 1704243 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 2044425 22942205 ~ 23007315 (+)

Expression


Co-expression Network