LOC110523395 (LOC106568500)


Basic Information

Item Value
gene id LOC110523395
gene name LOC106568500
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20898121 ~ 20910637 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602058.2
TGTAAACCGGGATATCTCTGAGGATGGACGTTTTCCGCTAATGACGTAGTCAACATCCTGTGTAGTTTGGAAAAGGGGAGTTTTTTTGCTAGCAATATCTCTGGTTATAGTTAATACCACCATCGCTTAACTAAACAAGCTAGTGAAACTATATTcaaaatacatttgtatttattttaaactTGTTAAAATTGTACTGAAATTAATTAGTTAACGTTAAGCTAGCCTACTCATACTATAGCCGGTAATTTCTGGTGGATCAAGTTTGTGTCGAGGAGAGAACAAGGCTGCCTGCGTTAGAAGACAAAAGAGATTGTTCACACCACCATGAAGCTTTTCAGTCTGAGTGTGCTGTATAAAGGGACCACCAAGTCTAACCTACTGAAAGCTGCCTTCGACCTGTCATCCTTCAGCTTCTTCCAGAAGTCCAGTGTTCAGGAGTTCATGACATTCACCAGTGACCTCATAGTTCAACGCTCGTCTATAGGGAGCCGAGCCTCTGTCAAAGAACAAGAGTACCTGTGTCACGTGTATGTAAGGAACGACTCCCTGGGTGCGGTGGTGATTGCTGACGGAGAGTATCCCTCTAGAGTGTGCTTCACCCTACTGGATAAGgTGCTGGAGGAATTTTCCAGACAGGTGAGCAGTATAGACTGGCCCTCTGGTTCTCCTGACACTGTCCACTATACTGCCCTGGACAGCTACCTCGCCAagtaccagAATCCTCGGGAGGCGGACGCAATGAGTAAAGTACAAGCTGAGCTGGACGAAACCAAAATAATTCTGcaCAACACTATGGAAAGTCtgttggagagaggagagaagctaGATGATCTAGTCCAGAAGTCCGAACACCTGGGGAACCAGTCTAAAGCCTTCTACAAGACGGCGCGGAAGCAGAACTCTTGCTGTGAGGTCATGTGATGTTGCTGAACCCCTCTTGATCTCCTCACCCCCCCGGATGTGCCATGACTATCAGCCTTCATATTATACTTCTTactctgcgtgtgtgtgagcgtactGGCGAAATGGTTGTGTGGTGAAGTGTATCAGGTGATAGTTGTTGGAGCCTTTTTGCAGTTGATTAGGCCTAAGTGCTGTTTTCTGAATATGTTCAGTGAATTCTATACATTCCTAGTTGTGAAAAAGTACAtgaattgtttgtgtgtgtgagaagtgAACATTGTGCATCAaaggtgtgtgattgtgtgttctctgtattgtgtgtgtgggtgtgtgtgtgtgtacagtaaagCAGGGGTTATTAAACCTTTTCAGCCTGTGAACCAAATGAGAAAGTTGATGTTTTCTTGGGACCCAAGCTCATGAAAACATGCCCCCTTTTTGGGGGTCCTAAGAAAACATCATGAAAACATGCCCCCTTTTTAGGGGTCCTAagaaaacattttagtggcccccctGTTGATGGCGGAGAAAGAAATggtttctgcaattctacacattgtgCCATGGGGCAGAGCATTTTTATCTGCAGTTTTACAgctagtttcctgcaattctacccattttgacATGGCTTACATCATGTTAATATGGTATCTGAGTGAGAGTAGTTACCAAAATCAATGTGCTCCTGTACAGTGttgaaaaaagtacccaattgtcataattGATTAAAAATAAAGATGCGTTAAtagaaaagtgaaagtcacccagtaaaatagagtaaaagtatttggttttaaatatacttaagtatcaaacgtgattgtaattgctaaaatatacttagtatcaaaagttaaagtataaatcatttcaaattccttatattaggcAAACCAGATGGTACGATTTTGGTTTttaatttatggatagccaggggcacacaatttacaaacaaagcatttgtgtttagtaagtCATACCAGATCAGGggctgtagagatgaccagggatgttctcttgataagtgtgtgaattggaccattttcctgtcctgctaagtattTGAAAtgtaagtacttttgggtgtcagggaaaatctatggagtaaaaagtacattcttgtatatatatttttaaagtacagACACAAAAAAACCTACTTAAGTAgtgctttaaagtatttttacttaagtactttacaccactgcccttGGCCACGTGGCCTGTTGGTATTttgccatgattactacaagtttagatagctggctagactgaattaccaatctaaaaactgttagctgacatggctaattgagtgactgacataacGAGAAAACTggtgatgcacaaccacatttctaaatagcaccttgtgtattctactattctaactaagtttcaacagtaagttgagaccccgactgagttcctaaaaaaaAAGAAtttgaaatgcatttattaacaTCTACATTTGCCACATTTATTCtatacagacaccttaatgcaaacttttaaatgatattatgtgagctaagcctacaaataaaatatataaaaacgtCTACAT

Function

NR:

description
synaptobrevin homolog YKT6-like isoform X1

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0006906 vesicle fusion biological_process
GO:0015031 protein transport biological_process
GO:0005829 cytosol cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG:

id description
K08516 YKT6; synaptobrevin homolog YKT6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602058.2 True 2476 mRNA 0.40 8 20898121 20910637
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110522818 LOC106568484 coding upstream 254 20881938 ~ 20897867 (+)
pnx LOC106568480 coding upstream 38359 20858342 ~ 20859762 (+)
LOC110522817 LOC106568462 coding upstream 55445 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 coding upstream 138866 20508074 ~ 20759255 (+)
LOC110523393 LOC106568920 coding upstream 483965 20390530 ~ 20414156 (+)
ccar2 LOC106568504 coding downstream 12377 20923014 ~ 20944043 (+)
LOC110523398 LOC100534606 coding downstream 41512 20952149 ~ 20991376 (+)
LOC110522819 LOC106568526 coding downstream 140299 21050936 ~ 21099289 (+)
LOC110523400 LOC106568542 coding downstream 197492 21108129 ~ 21160149 (+)
npm2b LOC106592477 coding downstream 366931 21277568 ~ 21288531 (+)
G377144 LOC100194676 non-coding upstream 46981 20849654 ~ 20851140 (+)
G377143 LOC100194676 non-coding upstream 51181 20800061 ~ 20846940 (+)
G377125 NA non-coding upstream 137636 20759746 ~ 20760485 (+)
G377107 NA non-coding upstream 155478 20709523 ~ 20742643 (+)
G377106 NA non-coding upstream 188976 20708923 ~ 20709145 (+)
G377186 NA non-coding downstream 3515 20914152 ~ 20914533 (+)
G377195 NA non-coding downstream 6550 20917187 ~ 20917779 (+)
G377197 NA non-coding downstream 10498 20921135 ~ 20921358 (+)
G377198 NA non-coding downstream 11240 20921877 ~ 20922095 (+)
G377022 NA other upstream 301258 20591480 ~ 20596863 (+)
G376320 NA other upstream 914273 19983261 ~ 19983848 (+)
arhgef28a LOC106568988 other upstream 2814756 18067350 ~ 18177035 (+)
G378660 NA other downstream 1261898 22172535 ~ 22231920 (+)
G378832 NA other downstream 1593115 22503752 ~ 22506270 (+)
G378868 NA other downstream 1691473 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 2031655 22942205 ~ 23007315 (+)

Expression

LOC110523395(LOC106568500) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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LOC110523395(LOC106568500) Expression in each Bioproject

Bar chart with 21 bars.
LOC110523395(LOC106568500) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network