LOC110522819 (LOC106568526)


Basic Information

Item Value
gene id LOC110522819
gene name LOC106568526
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21050936 ~ 21099289 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977026.1
CTATCTGTCGTTGGTGCAGGACAGTTGTATGCAGCAGAGCCCAGAGTGACATTGAGACCTGCGTCCATTACTGAATCTATTATTAGTTCATCATTAACTTAATTCCTCTCAGTTCAACTCTAACTGTCTGCTCAGgatgGCACATGATTGGCAGGGAGGTAGAAGTAGGAGTCACCACCGATATGAGGAAGATGATGAAGaacccCAGCCAGTGTATATTGGTGTTCCGTTAACACACGGTTACAGTAAAAGGAGACGGCGTAAACACCGCTCCCAACGCGAGAAACATCACACCCACCATGATCAACACACacagcacgaacacacacaccatgaccatCACTATGACAACCAGGAACACtatgaagatgaggaggagatggaaCAACATGACATATTTCACCCTGACTCCACAGTGTCCCCGGCGGCGGAGAGGCTGCGTTACATCCTGGGTGAAGATGATGACTTGCCGACGCCCACTCTGttcacagagatggacacacTGCAACACGATGGAGACGATATGGAGTGGAAAGAGTCTGCtagGTGGGTGAAGTttgaggagaaggtggaggagggaggagagaggtggagtaaGCCCCATGTGTCCACCTTGACCCTCCACAGTCTGTTTGAGTTGAGGACCTGTATACAGACTGGCAGTGTACTGCTGGATCTGGAGGGATACTCACTGCCAGAGatagtggATGACATTGTGGATCGCCAGGTAGCTGATGGTCTGATTGGTCCAGAGCTGAGGGAAAAGGTCAGCTTCGTGTTGCTACGGAAACATCGCCACCAGCATAAGAAACCCATGCATCGCTCACTAGCCGACATGGGCAAATCAAACAATTGCCCcgccagccgtAGTCCCCAGTCTGTTCATAGTGCCAGCCGTACTAACTTCAGTCGTAGTCCTAGTTCAGCCTCTGGCCTCCATCGTTCTACAGAAGACCTACGTGCCAAGTCAGGCAGCCTTGCCCGCCTGCATCATGCGCAAAGCCGAAGTATGAACGATATTTCAGACACACCAAGCACAGACCAGCTGAAGAACAAGTTCATGAAGAAGATTCCTCGTGATGCCGAGGCGTCTAACGTTCTGATTGGAGAAGTGGACTTCCTGGACAAACCATTTGTAGCGTTCGTACGTCTGGCCCAAGCTACCACACTGGGAGGCCTGACCGAGGTCCCCGTACCTACCAGGTTTCTGTTTGTCTTGCTTGGTCCTCATGGCAAAGGCAAGTCCTACAACGAGATTGGTCGAGCCATTGCTACGCTCATGGTGGATGACTTGTTTAGTGATGTGGCGTATAAAGCCCGGGACCGTGATGACCTGATCGCTGGGATTGATGAGTTTCTGGATGAGGTCATCGTTCTGCCACCAGGGGAGTGGGACCCAAAAATACGCATCGAGCCCCCCAAGAAAGTCCCCTCTGCCGACATGAGGAAGTCTGTGCTGAACCTGAACGAGCTGGGCCAGGTAAACGGGGCGGTCGggggggcaggaggaggagaggacgaggagaTGCCCGCCCCCCACGAGCTGGGAGAGGAACTGCAATTCACTGGCAGGTTCTGTGGAGGCCTGTGGCTGGACATTAAGAGGAAGGTTCCGTGGATCCTTAGTGATTTCTCCCAGGGATTCCACATCCAGTCCATCTCTGCTGTGCTGTTCATCTACCTGGGCTGCATCACCAACGCCATCACCTTCGGAGGCCTGCTGGGAGATGCCACAGACAACTACCagGGTGTGATGGAGAGTTTCCTAGGTACAGCGTTAGCAGGTACAGTGTTCTGTCTATTAGGAGGTCAACCTCTCATCATCCTCAGTTCCACTGGACCCATCCTCATCTTTGAGAAACTGCTCTACGAGTTCTGCAAGTCTAACACTATAGATTATATGGAGCTGCGTCTGTGGATTGGTCTCCACTCCTGTCTGCAGTGTCTGATCCTGGTCGCCACGGACGCCAGTTACATCATCAAATACATCACACGCTTCACTGAGGAGGGCTTCTCCAGCCTCATCTCCTTCATCTTCATCTCTGATGCCATTAAGAAGATGGTGGGATCCTTCAAGTACTACCCTATCAACCGTGGCTTCAAGCCTGACTACGTTACCTCATACAAGTGTGAATGTATCGCACCAGACCAGGcCGCTGCAATGGGTTTGAATGTTTCAGTTCCACTAGCGGACGATAACATGACTGATTTGTATAACATAACAGGTCTGGACTGGAGTCAGCTGAGTAAGAAGGAGTGTGTGAAGTATGGCGGCGCCCTGTTGGGAAACACCTGTAAGTACGTCCCTGACCTGGCCCTCATGTCCTTCATCCTGTTCTTCGGGACCTACTCCATGACCGTCTCACTCAAGAAGTTCAAGACCAGCCGGTACTTCCCCACCATGTGCCGCTCCCTGATTGGTGAATTCTCGATCATCATCTCAATCCTGGTATTCTGTGGGATAGACTACCTGTTAGGGCTGGAGACGCCCAAACTGCACGTGCCCACTGAAATCAAGCTGAGGAAGCTGATCAGTGATTTCTCCATCTTCATGTCAATCATGACGTTTGTGGGTCTGGATATGCTTGTAGGGCTGGACACACCCAAACTAATCGTACCCACAGAGTTTAAGCCGACGCGTCCAGACCGTGGCTGGTTGGTGATGCCGTTTGGTAAGAACCCGTGGTGGGTGTACGTGGCCAGCGCCGTTCCTGCTCTCCTGGTCACCATCCTCATCTTCATGGACCAACAGATCAGCGCTGTCATCGTCAACCGCAAAGAGAACAAACTCAAGAAAGGTTGTGGGTACCATCTGGACCTGTTCTGGGTGGGTATTCTGATGGCAGTGTGTTCCTTCCTGGGCCTGCCCTGGTACGTGGCTGCCACTGTCATCTCCATCGCCCACATCGACTCTCTGAAGATGGAGAGTGAGTCCAGCGCCCCAGGAGAGCAGCCCCAGTTCCTGGGAGTCAGGGAACAGAGGTTGACGGGTATTCTGGTGTTTGTCCTAAATGGAGTCTCTATCTTCCTGGCTCCTGTCCTGCAGTACATCCCCATGCCTGTTCTCTACGGTGTCTTCCTTTACATGGGAGTGGCCTCACTTGCTGGAATACAGTTCTGGGAGCGTATAAAGCTGTACCTGATGCCAGCCAAGCACCAGCCAGACTTCTCCTTCCTGCGTCATGTTCCTCTGAGGAGGGTTCACCTGTTCACCCTGGTCCAGATCATCTGTCTGGCTGTCCTCTGGATCCTCAAGTCTACTGTCGCTGCCATCATATTCCCTGTCATgATCCTGGGTCTGATGGTGGTGCGTAAGATGATGGACCTGATATTCTCTCAACATGACCTGGCCTGGCTGGACGACATCCTGCCAGAGAAAGACAAGAAGAAGGAGAAAGGGGGGAAGAAAAAGAAAGACAACAAAAAGACCAAAGCAGCAGCAGAGACGGAGAGCGACGAGGAGTGTTGCTGAAAAGGCACTGTATAACACTTACTACTGTCTGTCtcgacgtctgtctgtctgtctcgacgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgggcatc

Function

NR:

description
PREDICTED: electrogenic sodium bicarbonate cotransporter 4-like isoform X3

GO: NA

KEGG:

id description
K13857 SLC4A5, NBC4; solute carrier family 4 (sodium bicarbonate cotransporter), member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977026.1 True 3609 mRNA 0.52 27 21050936 21099289

Neighbor

gene id symbol gene type direction distance location
LOC110523398 LOC100534606 coding upstream 59560 20952149 ~ 20991376 (+)
ccar2 LOC106568504 coding upstream 106893 20923014 ~ 20944043 (+)
LOC110523395 LOC106568500 coding upstream 140299 20898121 ~ 20910637 (+)
LOC110522818 LOC106568484 coding upstream 153069 20881938 ~ 20897867 (+)
pnx LOC106568480 coding upstream 191174 20858342 ~ 20859762 (+)
LOC110523400 LOC106568542 coding downstream 8840 21108129 ~ 21160149 (+)
npm2b LOC106592477 coding downstream 178279 21277568 ~ 21288531 (+)
LOC110523406 crybb1 coding downstream 374564 21473853 ~ 21477171 (+)
LOC110523407 LOC106568363 coding downstream 379396 21478685 ~ 21493435 (+)
LOC110523409 LOC106565015 coding downstream 419268 21518557 ~ 21521828 (+)
G377261 NA non-coding upstream 6940 21043689 ~ 21043996 (+)
G377251 NA non-coding upstream 16420 21033942 ~ 21034516 (+)
G377243 NA non-coding upstream 25668 21024964 ~ 21025268 (+)
G377241 NA non-coding upstream 27567 21022705 ~ 21023369 (+)
G377240 NA non-coding upstream 31029 21019662 ~ 21019907 (+)
G377255 NA non-coding downstream 1042 21100331 ~ 21103100 (+)
G377292 NA non-coding downstream 13605 21112894 ~ 21125541 (+)
G377293 NA non-coding downstream 48042 21147331 ~ 21151990 (+)
G377294 NA non-coding downstream 53125 21152414 ~ 21153105 (+)
LOC110522817 LOC106568462 other upstream 214377 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 292435 20508074 ~ 20759255 (+)
G377022 NA other upstream 454073 20591480 ~ 20596863 (+)
G376320 NA other upstream 1067088 19983261 ~ 19983848 (+)
arhgef28a LOC106568988 other upstream 2967571 18067350 ~ 18177035 (+)
G378660 NA other downstream 1073246 22172535 ~ 22231920 (+)
G378832 NA other downstream 1404463 22503752 ~ 22506270 (+)
G378868 NA other downstream 1502821 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 1843003 22942205 ~ 23007315 (+)

Expression


Co-expression Network