LOC110523400 (LOC106568542)


Basic Information

Item Value
gene id LOC110523400
gene name LOC106568542
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21108129 ~ 21160149 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602067.2
AAGCATCCCTATTTCCGGTTTGTGATCCAAACACTTATCCGTTTTGATCCGAAAGAACTGTAGCCAGACTGATAGACGACAACCATCATAGGAGAAATGGCAGAATTCACGGATAAATTCAGCTCTTTCACCATGACGCAGTTAAACGAGTTACTTGAAGACGATGAAAAGTTAAATTCTATTGTCAAAGAAATGAACGAGATGTGTGAGGTGCAGCAGGTGAAGGAGCTGACCCTGGTCAGTAACATCAGTCTGGCAGAACAGAACCTCCAACTGCAGCCCAGTCTGGACCTTCAGAAGAACCAGCTCACTTCACGCTACCGCCACCTACAGGAGCTCTATGACAACTACCAGCTACGCAAGTCCACTCTCTACCATGGTTCAGGCAACAGCTCTCTGGACATTCTGCTGGCTCTGCTGCAAGCTGAGGGAGCCAAGATAGAAGAGGAGACTGAGAACATGGCAGACTCGTTTCTGGATGGAGAGCTGCCTCTGGACTGCTTTATCGATGACTACCAGCGGAGGCGCCATCTTGCTCATGTGCGCCGTGTAAAGATTGACAAACTCCGTGAGCTGGTGCTGAAGGGTCTCACTAGACCCCAGCAGACCCCTACCCAGCCCAGTCGACCCCAGGACTTCCCCTCTACCCCCTACACCAATGGAGCCTTGTCCCCCCAATCTACGCGAGCTGcccatcctccctcccctcagcagAGCGGCCTGTCATACCAAGTGGCCCCCTATCCCGCCATGTCTTTCCCCAGCCAGGATCCTCCAGGCTACCCCAGCAGCCCCTACATTCCCCAGCCCTACCCTCAAGCCCCCCAGCAACACCCCACCTCCCCATGCCTGCCCCCCCGAACTGGCTTCATCAtgcagtgagggggggggggggggtctgtctcCATAGAAACACCATGGATGATGACCTTATCTACCTTTGACCCAACAATGAGTGTTGGTGACTTAACCAATGACAGCCCCTGTCAGTAACACAGGGAAAACTCCTGACAGGCTCCCTCAGAGACTCCGTCCAGTAGCTACAGCCTGGGGGTTGATTCTCTTAGGTTTTTATTCTAAGACTAGCTTTCTGATTAATCTGAAGAAATATGAAAACTTAACTCTCTGACTGGTATTTATATGCGGTGTAGATGAGATGtagtttttgtaaactgaaggtGGTGTCTTCCTGTGCACACACTTGAGTATGCGTGAAGTTGTGTGTAACCCCAAAGGTCAGGACAGGTGGTGTGATAATAGTTGACCCTAAAGTTCCTAGTCGTCTAAAGGGAGGAGTCTGGATTTGTCACAACTATAGCTAGTCCATCAACCCTGAACAGAACTACTCAAATTGATttcaattcaaaatgtattgTAATCTAGGTGCTTTCCTATTCATTGGTGGAGGTTCTTTCCAGTAGGTCGGGAGGATGCAAGGCTGGGAATATACTATTTTACAAGGGAACTAACATTTTGGGATGGATTTGAATGACCTGCCAAAGATGTTCTCATCTTACCTATTGACTTGGCACTTTGTTTTAGTGATTGTTTTGTATACCGGTATAAGAGGTACCCCACCTAACTGGAAGATGGATATTGAAAATAACCATGCATCCTAAATTAATGTTACACTGGCTTTCTTGTGAAGCCAGTCAAAGTTGCCATGTGGGGAAAAGAGATCTACAGCTGGCTGTACATCTACAGTTTGCTTTCCCCATTTGTGCTCACCTCAAGGAAAACACATGGGGGTTAAAAAATGAGATGGTGCAGGAAACATTTAAAATATGAATATAGTATAGTAGTCCCTGGTACTGTACATCTGATCTACACTCCCTAGGAACAAACATTCATGTTGTAATGCTAGACTGACAGGTTGACTTTCATCCAAATCAATAAATGTTTTATAACCAATACTAAGGTGTTCTATGCCT
>TU428818
GTTTTGATCCGAAAGAACTGTAGCCAGACTGATAGACGACAACCATCATAGGAGAAATGGCAGAATTCACGGATAAATTCAGCTCTTTCACCATGACGCAGTTAAACGAGTTACTTGAAGACGATGAAAAGTTAAATTCTATTGTCAAAGAAATGAACGAGATGTGTGAGGTGCAGCAGGTGAAGGAGCTGACCCTGGTCAGTAACATCAGTCTGGCAGAACAGAACCTCCAACTGCAGCCCAGTCTGGACCTTCAGAAGAACCAGCTCACTTCACGCTACCGCCACCTACAGGAGCTCTATGACAACTACCAGCTACGCAAGTCCACTCTCTACCATGGTTCAGGCAACAGCTCTCTGGACATTCTGCTGGCTCTGCTGCAAGCTGAGGGAGCCAAGATAGAAGAGGAGACTGAGAACATGGCAGACTCGTTTCTGGATGGAGAGCTGCCTCTGGACTGCTTTATCGATGACTACCAGCGGAGGCGCCATCTTGCTCATGTGCGCCGTGTAAAGATTGACAAACTCCGTGAGCTGGTGCTGAAGGGTCTCACTAGACCCCAGCAGACCCCTACCCAGCCCAGTCGACCCCAGGACTTCCCCTCTACCCCCTACACCAATGGAGCCTTGTCCCCCCAATCTACGCGAGCTGcccatcctccctcccctca
>TU428819
ATGATGACCTTATCTACCTTTGACCCAACAATGAGTGTTGGTGACTTAACCAATGACAGCCCCTGTCAGTAACACAGGGAAAACTCCTGACAGGCTCCCTCAGAGACTCCGTCCAGTAGCTACAGCCTGGGGGTTGATTCTCTTAGGTTTTTATTCTAAGACTAGCTTTCTGATTAATCTGAAGAAATATGAAAACTTAACTCTCTGACTGGTATTTATATGCGGTGTAGATGAGATGtagtttttgtaaactgaaggtGGTGTCTTCCTGTGCACACACTTGAGTATGCGTGAAGTTGTGTGTAACCCCAAAGGTCAGGACAGGTGGTGTGATAATAGTTGACCCTAAAGTTCCTAGTCGTCTAAAGGGAGGAGTCTGGATTTGTCACAACTATAGCTAGTCCATCAACCCTGAACAGAACTACTCAAATTGATttcaattcaaaatgtattgTAATCTAGGTGCTTTCCTATTCATTGGTGGAGGTTCTTTCCAGTAGGTCGGGAGGATGCAAGGCTGGGAATATACTATTTTACAAGGGAACTAACATTTTGGGATGGATTTGAATGACCTGCCAAAGATGTTCTCATCTTACCTATTGACTTGGCACTTTGTTTTAGTGATTGTTTTGTATACCGGTATAAGAGGTACCCCACCTAACTGGAAGATGGATATTGAAAATAACCATGCATCCTAAATTAATGTTACACTGGCTTTCTTGTGAAGCCAGTCAAAGTTGCCATGTGGGGAAAAGAGATCTACAGCTGGCTGTACATCTACAGTTTGCTTTCCCCATTTGTGCTCACCTCAAGGAAAACACATGGGGGTTAAAAAATGAGATGGTGCAGGAAACATTTAAAATATGAATATAGTATAGTAGTCCCTGGTACTGTACATCTGATCTACACTCCCTAGGAACAAACATTCATGTTGTAATGCTAGACTGACAGGTTGACTTTCA
>TU428820
ATGATGACCTTATCTACCTTTGACCCAACAATGAGTGTTGGTGACTTAACCAATGACAGCCCCTGTCAGTAACACAGGGAAAACTCCTGACAGGCTCCCTCAGAGACTCCGTCCAGTAGCTACAGCCTGGGGGTTGATTCTCTTAGGTTTTTATTCTAAGACTAGCTTTCTGATTAATCTGAAGAAATATGAAAACTTAACTCTCTGACTGGTATTTATATGCGGTGTAGATGAGATGtagtttttgtaaactgaaggtGGTGTCTTCCTGTGCACACACTTGAGTATGCGTGAAGTTGTGTGTAACCCCAAAGGTCAGGACAGGTGGTGTGATAATAGTTGACCCTAAAGTTCCTAGTCGTCTAAAGGGAGGAGTCTGGATTTGTCACAACTATAGCTAGTCCATCAACCCTGAACAGAACTACTCAAATTGATttcaattcaaaatgtattgTAATCTAGGTGCTTTCCTATTCATTGGTGGAGGTTCTTTCCAGTAGGTCGGGAGGATGCAAGGCTGGGAATATACTATTTTACAAGGGAACTAACATTTTGGGATGGATTTGAATGACCTGCCAAAGATGTTCTCATCTTACCTATTGACTTGGCACTTTGTTTTAGTGATTGTTTTGTATACCGGTATAAGAGGTACCCCACCTAACTGGAAGATGGATATTGAAAATAACCATGCATCCTAAATTAATGTTACACTGGCTTTCTTGTGAAGCCAGTCAAAGTTGCCATGTGGGGAAAAGAGATCTACAGCTGGCTGTACATCTACAGTTTGCTTTCCCCATTTGTGCTCACCTCAAGGAAAACACATGGGGGTTAAAAAATGAGATGGTGCAGGAAACATTTAAAATATGAATATAGTATAGTAGTCCCTGGTACTGTACATCTGATCTACACTCCCTAGGAACAAACATTCATGTTGTAATGCTAGACTGACAGGTTGACTTTCATCCAAATCAATAAATGTTTTATAACCAATACTAAGGTGTTCTATGCCTGATGTCGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602067.2 False 1931 mRNA 0.47 4 21108129 21160140
TU428818 False 670 TUCP 0.52 4 21108169 21158919
TU428819 False 962 lncRNA 0.41 1 21159131 21160092
TU428820 True 1019 lncRNA 0.40 1 21159131 21160149

Neighbor

gene id symbol gene type direction distance location
LOC110522819 LOC106568526 coding upstream 8840 21050936 ~ 21099289 (+)
LOC110523398 LOC100534606 coding upstream 116753 20952149 ~ 20991376 (+)
ccar2 LOC106568504 coding upstream 164086 20923014 ~ 20944043 (+)
LOC110523395 LOC106568500 coding upstream 197492 20898121 ~ 20910637 (+)
LOC110522818 LOC106568484 coding upstream 210262 20881938 ~ 20897867 (+)
npm2b LOC106592477 coding downstream 117428 21277568 ~ 21288531 (+)
LOC110523406 crybb1 coding downstream 313713 21473853 ~ 21477171 (+)
LOC110523407 LOC106568363 coding downstream 318545 21478685 ~ 21493435 (+)
LOC110523409 LOC106565015 coding downstream 358417 21518557 ~ 21521828 (+)
LOC110523408 LOC106565015 coding downstream 367415 21527555 ~ 21534161 (+)
G377255 NA non-coding upstream 5029 21100331 ~ 21103100 (+)
G377272 NA non-coding upstream 36547 21071374 ~ 21071582 (+)
G377261 NA non-coding upstream 64133 21043689 ~ 21043996 (+)
G377251 NA non-coding upstream 73613 21033942 ~ 21034516 (+)
G377243 NA non-coding upstream 82861 21024964 ~ 21025268 (+)
G377299 NA non-coding downstream 659 21160799 ~ 21161204 (+)
G377301 NA non-coding downstream 2314 21162454 ~ 21162971 (+)
G377303 NA non-coding downstream 4989 21165129 ~ 21165486 (+)
G377322 NA non-coding downstream 43182 21203322 ~ 21203616 (+)
G377356 NA non-coding downstream 133262 21293402 ~ 21294594 (+)
LOC110522817 LOC106568462 other upstream 271570 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 349628 20508074 ~ 20759255 (+)
G377022 NA other upstream 511266 20591480 ~ 20596863 (+)
G376320 NA other upstream 1124281 19983261 ~ 19983848 (+)
arhgef28a LOC106568988 other upstream 3024764 18067350 ~ 18177035 (+)
G378660 NA other downstream 1012395 22172535 ~ 22231920 (+)
G378832 NA other downstream 1343612 22503752 ~ 22506270 (+)
G378868 NA other downstream 1441970 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 1782152 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 2463824 23623921 ~ 23678038 (+)
G377294 NA non-coding upstream 6026 21152414 ~ 21153105 (+)
G377293 NA non-coding upstream 7141 21147331 ~ 21151990 (+)
G377292 NA non-coding upstream 33590 21112894 ~ 21125541 (+)
LOC110523400 LOC106568542 other upstream 212 21108129 ~ 21160149 (+)

Expression


Co-expression Network