npm2b (LOC106592477)


Basic Information

Item Value
gene id npm2b
gene name LOC106592477
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21277568 ~ 21288531 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602076.2
ggggggataatcCTCTGCAGTACGGGCCAGTCTGAAGTTCCAGTCCTTCGAACCTGATCTCAAATTTGTGAAACATGAACAAACCCGAAAAGCCACTGTCTACGCTGTGGGGTTGTGAACTCAGCGAGTCAAAGAAAGAGGGAACATTCAAAACCGATGACACAAACCACCAACATCAACTCGCACTGAGAACTATGTGTCTGGGCGCAGGCGCCAAAGAAGAGTTCAACATCGTGGCATTAATTACCGGAGAACCAGATAACGACAAGGGCATACCCATGGCTACCCTGCACGCCAACGGCATGCCCACGGTCAATCTGTCTGGGATAGACCTGCACCCTCCTGTAACCTTTCAGCTGAGGAGTGGCGCTGGACCGGTCTACATCTGTGGGGAACACGTGGCCTTGGAGGATGACTTCTCAGGAATAGATAGTGTTgatgaggagatggaggaagaggaggaggaggaagatattgAGTCTCCTGTGAAGCCTGCTAAGAAAGCAACTGCCAAGAATGCAAATGTTGCAGGCAAAAGAAAGAAGCCAGAGGAAGCAGATGAacctgcATCAGATGATGAGAACAACCCTCCTAAAAAGGGAAAGGGTAGAGGAAGAGGCAGGGGAAAGTGATCCAGGGTGCTGCCCAAAAGAGTCTGTTGCAGTTCTGTTTGGCTAAAGGTTCTGTCAATCAACTGTTGGGTTTCTATCTACCTGTTCATTCTTGCATGGTTCAAATGATTTAATCTAAGGCTGTTTATCCTGTACATGTCAGTGCTTTGTAAATCGTTCGAAAGAGTTTTGTCCTTGTGGTACTAATCAGTGTACattaaactatactgaacaaaatagaATCAGTGTACATTAAAatacactgaaaaaaatataaatgtaacatgttAAGTGGTCctttgtttcatgagctgaaataaataaaaaaaaatcccagaaatgtta

Function

NR:

description
nucleoplasmin-like

GO: NA

KEGG:

id description
K11277 NPM2; nucleophosmin 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602076.2 True 956 mRNA 0.45 11 21277568 21288531

Neighbor

gene id symbol gene type direction distance location
LOC110523400 LOC106568542 coding upstream 117428 21108129 ~ 21160149 (+)
LOC110522819 LOC106568526 coding upstream 178279 21050936 ~ 21099289 (+)
LOC110523398 LOC100534606 coding upstream 286192 20952149 ~ 20991376 (+)
ccar2 LOC106568504 coding upstream 333525 20923014 ~ 20944043 (+)
LOC110523395 LOC106568500 coding upstream 366931 20898121 ~ 20910637 (+)
LOC110523406 crybb1 coding downstream 185322 21473853 ~ 21477171 (+)
LOC110523407 LOC106568363 coding downstream 190154 21478685 ~ 21493435 (+)
LOC110523409 LOC106565015 coding downstream 230026 21518557 ~ 21521828 (+)
LOC110523408 LOC106565015 coding downstream 239024 21527555 ~ 21534161 (+)
LOC110523411 LOC106568349 coding downstream 290459 21578990 ~ 21597442 (+)
G377322 NA non-coding upstream 73952 21203322 ~ 21203616 (+)
G377303 NA non-coding upstream 112082 21165129 ~ 21165486 (+)
G377301 NA non-coding upstream 114597 21162454 ~ 21162971 (+)
G377299 NA non-coding upstream 116364 21160799 ~ 21161204 (+)
G377356 NA non-coding downstream 4871 21293402 ~ 21294594 (+)
G377360 NA non-coding downstream 17131 21305662 ~ 21306274 (+)
G377371 NA non-coding downstream 26110 21314641 ~ 21315084 (+)
G377363 NA non-coding downstream 27146 21315677 ~ 21415826 (+)
G377377 NA non-coding downstream 30274 21318805 ~ 21320208 (+)
LOC110522817 LOC106568462 other upstream 441009 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 519067 20508074 ~ 20759255 (+)
G377022 NA other upstream 680705 20591480 ~ 20596863 (+)
G376320 NA other upstream 1293720 19983261 ~ 19983848 (+)
G378660 NA other downstream 884004 22172535 ~ 22231920 (+)
G378832 NA other downstream 1215221 22503752 ~ 22506270 (+)
G378868 NA other downstream 1313579 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 1653761 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 2335433 23623921 ~ 23678038 (+)

Expression


Co-expression Network