LOC110523407 (LOC106568363)


Basic Information

Item Value
gene id LOC110523407
gene name LOC106568363
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21478685 ~ 21493435 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977038.1
ACGTCACTCGAACTATGTCACGTGGGTTGATAGCGACTCCAGCTGTCTGGTTTCAAGCAGCAAGTCAAGAATAAACAACATGGCAGCACTCTTCAAAGCTGGAAAAGCCCTGGGCTTGTGTGTCAGTGGCTGTAGGTCTCTGTCCTCTCTAGCTGAGCTACCAGAGATGCACCAGATGATGAGACAAACCTGTAGAGACTACGCAGACAGAGAGCTGGGTCCTATAGCTGGCAAACTTGATAAGGAACACCTCTTCCCAGcgcaacaggtGCGAGAGCTGGGTGCTATGGGGGTGATGGCTGTAGAGGTTCCTGAGGCGCTGGGAGGAGCAGGAATGGACTACCTGGCCTACTCTCTGGCCGTGGAGGAGATCAGTAGGGGCTGCGGCAGCACTGGATGTGTGGTCTCGGTCAACAACtcTTTGTACATAGGGCCAATATTGAAGTTTGGAACACAGAAGCAGAAGGAACAGTGGATCACTCCCTTCACGACTGGAGAGAAAGTTGGCTGCTTCGCTCTGAGTGAACCAGGTAATGGTAGTGATGCAGGGGCAGCGTCTACGTTAgccagacaggagggagaggagtgggtgtTGAACGGGACTAAAGCCTGGATTACCAACAGCTGGGATGCTTCAGCTACTGTCATATTCGCTACCACTGACAAGTCACTCAAACACAAGggtATCAGTGCATTCCTGGTGCCCATGCCCCATCCTGGCCTGTCCCTGGGGAAGAAGGAGGACAAGCTGGGCATCAGAGCAACCTCCACGGCCAACCTCATCCTGGAGGACTGTAGGATACCCCTGGGCAACATGCTGGGGTCACGAGGATCTGGCTTCAAGATAGCCATGcaaaCCCTGGACAGTGGGCGTATAGGTATAGCTTCCCAGGCCCTGGGTATTGCTCAGGCTGCTCTGGACTGTGCTGCGGACTACGCTCACAAACGCACCGCCTTCGGCGCGCCCATTGGCAAGCTGCAGgctgtacagTTCAAGTTggcagacatggctgtagctgtTGAAAGTGCTCGTCTCCTCACCTGGAAGGCTGCAATGCTAAAAGACGCCAAGAAACCCTTCACCAAGGAAGCAGCCATGGCCAAACTAGCAGCGTCTGAGGCTGCTACCTTCTGCGGCCACCAGTCAATCCAGGTTCTTGGGGGAATGGGTTACGTGACAGACATGCCAGCGGAGAGGCACTACCGTGACGCGCGAATCACTGAGATCTATGAAGGCACCAGTGAGATCCAGAGACTGGTGATAGCCGGCCAGCTGCTGAAGGAGTATGCGTCATAGAGACTTGCGATTTAGACCCAAATGGTGGCcgtatattccctacatagtgcactacttctggatCGATTCCAGTGGCCAAAAgtggtgtactatatagggaatagggtaccatttcagaTTGGCTCATAACAGCTACTACACCCAGGGCTGCGTTCAGGACTGCAGTGTAGTGTTGCACAGTCTCATCAGCGCCGGTCAGCTACTGAACTGGAAGGAATGCCAGGCATGGAGACAGGCTCACACAGCTCTGGGTAGAAGTTGCCCTTAACCACAGATCTTGGACCAGATTGCCCAACGCCCAAATTCTAACCTCAACTGTTATGGAGAGAACATCATTCCCTGGGCCAATGGGGAGTGACACCTACCTACCACTCCAATGGGACACCATCAGGCCAGGGTTCAGGACAACTTGCACCCTACCTCTGACTCATATTACTGCAACAATTACTAAACAATCCAAGCAATTTGTTACTTTTGAAATCAACATGAAGCTATGCATCTTCCTTTCTGCCTTTAAAACATTATTATCTGCCTTAAACTGATGTTATCTGGTAACATAATAGAAGTTAGTGGACTCATGTCCTCATTGTGGATAACCAGGGTGAAGATGACTAGCTCTGTCCAAATCAGACAAAAAGAAAGGTGCTGTCCTGGGTGGTgatcagatagaaatgtattgtgtagaacTGACATGTCTCTTAAACATGCATAGTGAGGAATCATTTCAGTTCTGTTCATGCCATTTCTATCTACAATGTCCAGTATGCGGTTGCGTCCTGAGTGTGAGTGACCCTGTTGTCTGTGTGAGGTGCAGTGCTAATTCAAGCCACACGAGGGCAGTGCAGTGTCTGGACTGTCTTGCCTTCACCTGCAATGAGGGAAATCAATGGCCCTTTGAACACTTTTAACGTGCATTCCTCCCTGTTCTCTTTCTTGGAAATATTTATTCACCAAATTGGGTAGTTTTAAACAAGGATTCTACTGCTGTTGTCTAACCTCATCCTCAGCCTAGGCTGGTGGGTGAGACTAGTAGTTAGTTATCACCATGTTGGAAAATAATCAATGATTACTTCAAGCAGGGGGGAGAAATGCATTTGAGTTTTTAAACACGGACACACACCTCAGAACCTTCCTGCTGTGCCTGTTCTGATGCTGCTCTCTAGGCTGTACATTGACAATATGATATTTTGAGACTGTTATGGAACTGCAACAACTGGGAAGTGGTTTAACATGTTTGTCTCTATGGCTGTTAGTTATTAGGACTGTTGCATTGAATGTTTAATATCAGTTGTGTGATCTGTTCAGATGAAACTGAATGACGCAGCTATACAGGAGCTCTTGTGTTTCAAAAGTCTAAATGATGGGTTGTGTAGCTACAAAGCCCATCAAGCTTGTGCCTCAAATTGCTGTTGTACATGTTTTATCGTAATTTTATGGTACATAATGAAATTAAAAACAAAAGATCACATGA
>XM_036977039.1
TGTCACGTGGGTTGATAGCGACTCCAGCTGTCTGGTTTCAAGCAGCAAGTCAAGAATAAACAACATGGCAGCACTCTTCAAAGCTGGAAAAGgtGCGAGAGCTGGGTGCTATGGGGGTGATGGCTGTAGAGGTTCCTGAGGCGCTGGGAGGAGCAGGAATGGACTACCTGGCCTACTCTCTGGCCGTGGAGGAGATCAGTAGGGGCTGCGGCAGCACTGGATGTGTGGTCTCGGTCAACAACtcTTTGTACATAGGGCCAATATTGAAGTTTGGAACACAGAAGCAGAAGGAACAGTGGATCACTCCCTTCACGACTGGAGAGAAAGTTGGCTGCTTCGCTCTGAGTGAACCAGGTAATGGTAGTGATGCAGGGGCAGCGTCTACGTTAgccagacaggagggagaggagtgggtgtTGAACGGGACTAAAGCCTGGATTACCAACAGCTGGGATGCTTCAGCTACTGTCATATTCGCTACCACTGACAAGTCACTCAAACACAAGggtATCAGTGCATTCCTGGTGCCCATGCCCCATCCTGGCCTGTCCCTGGGGAAGAAGGAGGACAAGCTGGGCATCAGAGCAACCTCCACGGCCAACCTCATCCTGGAGGACTGTAGGATACCCCTGGGCAACATGCTGGGGTCACGAGGATCTGGCTTCAAGATAGCCATGcaaaCCCTGGACAGTGGGCGTATAGGTATAGCTTCCCAGGCCCTGGGTATTGCTCAGGCTGCTCTGGACTGTGCTGCGGACTACGCTCACAAACGCACCGCCTTCGGCGCGCCCATTGGCAAGCTGCAGgctgtacagTTCAAGTTggcagacatggctgtagctgtTGAAAGTGCTCGTCTCCTCACCTGGAAGGCTGCAATGCTAAAAGACGCCAAGAAACCCTTCACCAAGGAAGCAGCCATGGCCAAACTAGCAGCGTCTGAGGCTGCTACCTTCTGCGGCCACCAGTCAATCCAGGTTCTTGGGGGAATGGGTTACGTGACAGACATGCCAGCGGAGAGGCACTACCGTGACGCGCGAATCACTGAGATCTATGAAGGCACCAGTGAGATCCAGAGACTGGTGATAGCCGGCCAGCTGCTGAAGGAGTATGCGTCATAGAGACTTGCGATTTAGACCCAAATGGTGGCcgtatattccctacatagtgcactacttctggatCGATTCCAGTGGCCAAAAgtggtgtactatatagggaatagggtaccatttcagaTTGGCTCATAACAGCTACTACACCCAGGGCTGCGTTCAGGACTGCAGTGTAGTGTTGCACAGTCTCATCAGCGCCGGTCAGCTACTGAACTGGAAGGAATGCCAGGCATGGAGACAGGCTCACACAGCTCTGGGTAGAAGTTGCCCTTAACCACAGATCTTGGACCAGATTGCCCAACGCCCAAATTCTAACCTCAACTGTTATGGAGAGAACATCATTCCCTGGGCCAATGGGGAGTGACACCTACCTACCACTCCAATGGGACACCATCAGGCCAGGGTTCAGGACAACTTGCACCCTACCTCTGACTCATATTACTGCAACAATTACTAAACAATCCAAGCAATTTGTTACTTTTGAAATCAACATGAAGCTATGCATCTTCCTTTCTGCCTTTAAAACATTATTATCTGCCTTAAACTGATGTTATCTGGTAACATAATAGAAGTTAGTGGACTCATGTCCTCATTGTGGATAACCAGGGTGAAGATGACTAGCTCTGTCCAAATCAGACAAAAAGAAAGGTGCTGTCCTGGGTGGTgatcagatagaaatgtattgtgtagaacTGACATGTCTCTTAAACATGCATAGTGAGGAATCATTTCAGTTCTGTTCATGCCATTTCTATCTACAATGTCCAGTATGCGGTTGCGTCCTGAGTGTGAGTGACCCTGTTGTCTGTGTGAGGTGCAGTGCTAATTCAAGCCACACGAGGGCAGTGCAGTGTCTGGACTGTCTTGCCTTCACCTGCAATGAGGGAAATCAATGGCCCTTTGAACACTTTTAACGTGCATTCCTCCCTGTTCTCTTTCTTGGAAATATTTATTCACCAAATTGGGTAGTTTTAAACAAGGATTCTACTGCTGTTGTCTAACCTCATCCTCAGCCTAGGCTGGTGGGTGAGACTAGTAGTTAGTTATCACCATGTTGGAAAATAATCAATGATTACTTCAAGCAGGGGGGAGAAATGCATTTGAGTTTTTAAACACGGACACACACCTCAGAACCTTCCTGCTGTGCCTGTTCTGATGCTGCTCTCTAGGCTGTACATTGACAATATGATATTTTGAGACTGTTATGGAACTGCAACAACTGGGAAGTGGTTTAACATGTTTGTCTCTATGGCTGTTAGTTATTAGGACTGTTGCATTGAATGTTTAATATCAGTTGTGTGATCTGTTCAGATGAAACTGAATGACGCAGCTATACAGGAGCTCTTGTGTTTCAAAAGTCTAAATGATGGGTTGTGTAGCTACAAAGCCCATCAAGCTTGTGCCTCAAATTGCTGTTGTACATGTTTTATCGTAATTTTATGGTACATAATGAAATTAAAAACAAAAGATCACATGA

Function

NR:

description
short-chain specific acyl-CoA dehydrogenase, mitochondrial-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K00248 ACADS, bcd; butyryl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977038.1 False 2768 mRNA 0.48 10 21478685 21493435
XM_036977039.1 True 2592 mRNA 0.48 9 21478700 21493435

Neighbor

gene id symbol gene type direction distance location
LOC110523406 crybb1 coding upstream 1514 21473853 ~ 21477171 (+)
npm2b LOC106592477 coding upstream 190154 21277568 ~ 21288531 (+)
LOC110523400 LOC106568542 coding upstream 318545 21108129 ~ 21160149 (+)
LOC110522819 LOC106568526 coding upstream 379396 21050936 ~ 21099289 (+)
LOC110523398 LOC100534606 coding upstream 487309 20952149 ~ 20991376 (+)
LOC110523409 LOC106565015 coding downstream 25122 21518557 ~ 21521828 (+)
LOC110523408 LOC106565015 coding downstream 34120 21527555 ~ 21534161 (+)
LOC110523411 LOC106568349 coding downstream 85555 21578990 ~ 21597442 (+)
LOC110523412 LOC106568387 coding downstream 108598 21602033 ~ 21609081 (+)
LOC110523413 LOC106568345 coding downstream 122765 21616200 ~ 21622938 (+)
G377455 NA non-coding upstream 23249 21450467 ~ 21455436 (+)
G377416 NA non-coding upstream 81571 21396701 ~ 21397114 (+)
G377405 NA non-coding upstream 98538 21379586 ~ 21380147 (+)
G377364 NA non-coding upstream 104976 21371266 ~ 21373709 (+)
G377381 NA non-coding upstream 149627 21327393 ~ 21329058 (+)
G377494 NA non-coding downstream 24310 21517745 ~ 21518246 (+)
G377505 NA non-coding downstream 56902 21550337 ~ 21550561 (+)
G377513 NA non-coding downstream 71839 21565274 ~ 21565606 (+)
G377517 NA non-coding downstream 75519 21568954 ~ 21569214 (+)
G377520 NA non-coding downstream 77774 21571209 ~ 21572272 (+)
LOC110522817 LOC106568462 other upstream 642126 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 720184 20508074 ~ 20759255 (+)
G377022 NA other upstream 881822 20591480 ~ 20596863 (+)
G376320 NA other upstream 1494837 19983261 ~ 19983848 (+)
G378660 NA other downstream 679100 22172535 ~ 22231920 (+)
G378832 NA other downstream 1010317 22503752 ~ 22506270 (+)
G378868 NA other downstream 1108675 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 1448857 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 2130529 23623921 ~ 23678038 (+)

Expression


Co-expression Network