LOC110523409 (LOC106565015)


Basic Information

Item Value
gene id LOC110523409
gene name LOC106565015
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21518557 ~ 21521828 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602086.2
AGTCTACCGGAAACTACCAAGAAGAAGTAATGTAAATGTTATCTCTGCTTGAAGTATAATTCCTACCATGCAATGGGCACCGACATTTGGGTGAAACATCGACTTTATTTGCTTGATATTGAGGATATCACGTTGATAGCTCTACCCCAAAATGGACCTGCTGCTGCAAATGGACAATTTCGATAGCACCATAGAGGATTGGGCTACATATATCGAGAGACTTGAGCAGTATTGCTTTGCTAACGATGTAGAAGCTGAAAGGAAAGTGGGGGTACTTCTGGGTGTAATGGGAGCTAAAACATATAACTTGCTATGTACCCTTACAGCACCGACAAAGCCAGAAGAGAAGACTTTCAAAGAGATTGTAAACGCGTTACAGACCCATCTAAATCCAAAGCCGCTGGTCATAGCCGAACGTTTCCGATTTCACAAACGGAATCAGCAAAAGACAGAGTCAATACCGGAGTACATTGCGGAGCTCCGCCAGCTCTCGCAGTATTGTCAGTTCGGACAGGGATTGTCGGATGCGCTCAGAGACAGGCTGGTATTCGGGTTACACAACGAGAGCACACAGAAACGGCTCTTATCAGAAATAGATCTGACATTGGCGCGCGCATTGGACATAGCCATATCAATGGAAACTGCCGCAAAAGATGCAGGAGAGTTACAGAGGAAAAATACAGTGGAATGCACAGTGAACAAGTTGAACACCCGACGTCAAGATAAATCACAGGCATGCTTTCGGTGTGGTAAAAAGTCACATGACCCTGTCGATTGTTGGTTTAAAGACAAAGACTGTAGACAATGTAACAAAAGAGGACACATACAGAAAATGTGCAAATCGAAGCAGAGTGATAAAAAGTCACCCAAaacaggaaagagagaaggagaagtgcATCAGGTTACTGAAACTGATTCAAATGACTCTGATGAAGAAGACATGTCATGTCTTGAACTTTTTTCTCTTAAAGAGACAGATCACAAAATAATATGTGTGACACCTGAAGTAGAGGGGGTGGCACTAAAGGACAGCAAGGACATCAGTTCACATACAGATAGACAATTGCGTCAGAGAACGTtggagaaaggaaaggaaatgGCCACTatctctgatgatgatgatggtggtggtgatgattatgatggtgttgatgattaTGATTATAACGATGATAATGGTGACGATGATTATGATGCTAATAATGGTAATGATAATTATGATGCTGGTGACAGTAGTGATaaagatggtgatgatgatgcctGTGACAACAGTTCTAAAACCAGAGACAAGCCCTACCACTGCTTAGACTGTGGTAAGAGTTTTACCCGAGTCTATCATTTAAAAAGACACAAGCAAACACATAACAAAGAAAAATTTCACCAATGCTCTGATTGTGGTAAAAGCTTCACTCGACCGGAACATTTGAAAAAACACCAGCGAAGCCATATGACTGACAAATCATACCATTGCACTAACTGTGATGAGTGTTTCTCTAAAGCAGCACAACTAAGAAGTCACATGAAAGTGCATGCCGGGGAAAAGCCTCACCTCTGCACCGACTGTGGGAAACTATTCCAGTCGTTACACGCGTTTGAAAGACACCAGCAGAAACATGCTGGAAAGATGCTTCACCAATGCTCAGACTGTGGTAAAGGTTTTACCAGAGCATATCACTTGAGAAGACACCAGCATACACATAAAGAGAAGTCTAATTACTGCTCTGATTGTGGTAAGAGCTTCACTCGTCCGGAAAATCTAAAAAGACACCAGTGGAAACACAAGGAAAAAACACGTTACCACTGCTCTATGTGTGAGGAGAAGTTCTCTACACAGGCAATGTTAAATAGTCACCTGCAGGTACATGTTGGAGAGCTACCTCACcattgctctgactgtggaaaggcGTTCTCAGACAAAAGACAATTTGagatccaccagaaaagacatcagcgaaaaactgtaaaaaaaaggTCTTACCTTTGCAGTGACTGTGGAATGACTTTCAACAAGCCAAGCACATTTAAGGTGCACCAGAGATCTCACACAGGAGAAAAACCATACAGCTGCTcagagtgtgggaagagttttgtccAGTCCACCACACTCCGGATCCACCTCCAGTGGCATGCTGGGGAGAGGGCCAGCTACTCCTGCCCTGTTTGTGGGAAGATTTTCTCTCGAGCTGACAGTGTGAGGAGACACCAGAtggttcacacaggagagagacctcATGAGTGCCACTGTTGTGGGAAACGCTGCTTCCGACGGAGTGCTCTGATCATACATATGAGGagtcacactggagagaaaccataCGTTTGTTCTGAGTGCGGGAAGAGGTTCTCCCAAGACGGTGACCAGAAACGACACCAAATAAGACaccaccctgacctctgacctgaagAGGACAGCAGGCACAGGCAGGCTTCAGTACAGGCACACAGGCACCCAAATCCACCCTCAGCCCCTACCCTACTAGCTCATACCCCCTAGCCCCTATACCAGGGGGTCGCAAAGTCATTCCTGGACGGTCTAGTGGTTTTTACTATTTCCCATATTATGGCTAaaatctgctagctagctaaccaacaattGTAAttatgtatttgagagacaagtgctcattgtgcaaatgtatttgttttcaatcAACATTGGAGATGAAATATagcttacatgttgtcaacaatctaagcaaACTCCAtttgttttgccccatagttgcgcacgcatctgttttgttgctaaacaaccaacccctcTATGCAGATGTTGAAGCACCGttgcttggaaaaactccctagaaaggcaggaacctaggaagaaacctacagAGGAACCACATTCATAATTTTTTCCGTAACTATATTTCTATCCATTCATCATTGTGTACAGTATTCATGGTGCATTCAATAGAtggaaaacaacaaaaaatgatttAGCAAAGCAGGATACTAGCTACAACTACAGTTATTTATCCCAGTAGCCTACATTATGCACAGAAACCACGTGATAGGCTTCTGATCACCGAAAAGGTCACTAGTTAGCCACAAAGTAAGAAGGTCTGCCTACTTGACCAATCAGATGAATGTTGAACGTGTATGCTGGCTTACAGTTTGCAGGCAACGACCAATCAGATGAGGGAGTGTGATGACCGTATGCCGACCGGCATGCAGGGGCAGACGAGAGACATGCATTTGTTTTGTCTAGTGATCCATCAATGATTTGGTTATTTATTATCCATAATAAAACCAACATTTCTAAATGCAAA

Function

NR:

description
oocyte zinc finger protein XlCOF6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602086.2 True 3272 mRNA 0.43 1 21518557 21521828

Neighbor

gene id symbol gene type direction distance location
LOC110523407 LOC106568363 coding upstream 25122 21478685 ~ 21493435 (+)
LOC110523406 crybb1 coding upstream 41386 21473853 ~ 21477171 (+)
npm2b LOC106592477 coding upstream 230026 21277568 ~ 21288531 (+)
LOC110523400 LOC106568542 coding upstream 358417 21108129 ~ 21160149 (+)
LOC110522819 LOC106568526 coding upstream 419268 21050936 ~ 21099289 (+)
LOC110523408 LOC106565015 coding downstream 5727 21527555 ~ 21534161 (+)
LOC110523411 LOC106568349 coding downstream 57162 21578990 ~ 21597442 (+)
LOC110523412 LOC106568387 coding downstream 80205 21602033 ~ 21609081 (+)
LOC110523413 LOC106568345 coding downstream 94372 21616200 ~ 21622938 (+)
LOC110523414 cetn3 coding downstream 111704 21633532 ~ 21635979 (+)
G377494 NA non-coding upstream 311 21517745 ~ 21518246 (+)
G377455 NA non-coding upstream 63121 21450467 ~ 21455436 (+)
G377416 NA non-coding upstream 121443 21396701 ~ 21397114 (+)
G377405 NA non-coding upstream 138410 21379586 ~ 21380147 (+)
G377364 NA non-coding upstream 144848 21371266 ~ 21373709 (+)
G377505 NA non-coding downstream 28509 21550337 ~ 21550561 (+)
G377513 NA non-coding downstream 43446 21565274 ~ 21565606 (+)
G377517 NA non-coding downstream 47126 21568954 ~ 21569214 (+)
G377520 NA non-coding downstream 49381 21571209 ~ 21572272 (+)
G377523 NA non-coding downstream 55376 21577204 ~ 21577584 (+)
LOC110522817 LOC106568462 other upstream 681998 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 760056 20508074 ~ 20759255 (+)
G377022 NA other upstream 921694 20591480 ~ 20596863 (+)
G376320 NA other upstream 1534709 19983261 ~ 19983848 (+)
G378660 NA other downstream 650707 22172535 ~ 22231920 (+)
G378832 NA other downstream 981924 22503752 ~ 22506270 (+)
G378868 NA other downstream 1080282 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 1420464 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 2102136 23623921 ~ 23678038 (+)

Expression


Co-expression Network