LOC110523408 (LOC106565015)


Basic Information

Item Value
gene id LOC110523408
gene name LOC106565015
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21527555 ~ 21534161 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602084.2
CACTGTCGAATGAGCCAAAAGATCGTACAAGATGAAGTTATGTAAACTCACCTTTTTTTGTGACAAAATGTGCAATTCACACTCCGACCTGTGAAAGGCAGCAATACGCAACACAGCGTCTTAGTCTACCGGAAACTCATAAGAAGAAAGAAGTCATGTAAACGTTATCTCTGCTTGAAGTACAATTCCTACCGTGTAATGAACACCAACATCGGGGAGAAAAATAGACTAAAACATACTTTATTTGCTTGATATTGAGGATATCACGTTGATAGCTCTACCCCAAAAATGGACCTGCTGCTGCAAATGGACAATTTCGATAGCACCATAGAGGATTGGGCTACATATATCGAGAGACTTGAGCAGTATTGCTTTGCTAACGATGTAGAAGCTGAAAGGAAAGTGGGGGTACTTCTGGGTGTAATGGGAGCTAAAACATATAACTTGCTATGTACCCTTACAGCACCGACAAAGCCAGAAGAGAAGACTTTCAAAGAGATTGTAAACGCGTTACAGACCCATCTAAATCCAAAGCCGCTGGTCATAGCCGAACGTTTCCGATTTCACAAACGGAATCAGCAAAAGACAGAGTCAATACCGGAGTACATTGCGGAGCTCCGCCAGCTCTCGCAGTATTGTCAGTTCGGACAGGGATTGTCGGATGCGCTCAGAGACAGGCTGGTATTCGGGTTACACAACGAGAGCACACAGAAACGGCTCTTATCAGAAATAGATCTGACATTGGCGCGCGCATTGGACATAGCCATATCAATGGAAACTGCCGCAAAAGATACAGGAGAGTTACAGAGGAAAAATACAGTGGAATGCACAGTGAACAAGTTGAACACCCGACGTCAAGATAAATCACAGGCATGCTTTCGGTGTGGTAAAAAGTCACATGACCCTATCGATTGTTGGTTTAAAGACAAAGACGGTAGACAATGTAACAAAAGAGGACACATACAGAAAATGTGCAAATCGAAGCAGAGTGATAAAAAGTCACCCAAaacaggaaagagagaaggagaagtgcATCAGGTTACTGAAACTGATTCAAATGACTCTGATGAAGACATGTCATGTCTTGAACTTTTCTCTCTTAAAGAGACAGATCGCAAAATAATCTGTGTGACACCTGAGGTAGAGGGGGTGGCACTAAAGGACACAATGTTTGACAGCAAGGACAGCAGTTTACATACAGATAGACAATTGCGTCAGAGAACGTTGGAGAAAGGGAAGGAAATGGCCACAATctctgatgatgatggtggtgatgatggtgttgatgacgATTATGATTATAACGatgataatggtgatgatgaaggtgatgatgataataatggtAATGATAATTATGATGCTGGTGACAGTAGTGATaaagatggtgatgatgatgcctGTGACAACAGTTCTAAAACCAGAGACAAGCCCTACCACTGCTTAGACTGTGGTAAGAGTTTTACCCGAGTCTATCATTTAAAAAGACACAGGCAAACACATAACAAAGAAAAATCTCACCAATGCTCTGATTGTGGTAAAAGCTTCACTCGACCGGAACATTTGAAAAAACACCAGCGAAGCCATATGACTGACAAATCATACCATTGCACTAACTGTGATGAGTGTTTCTCTAAAGCAGCACAACTAAGAAGTCACATGAAAGTGCATGCCGGGGAAAAGCCTCACCTCTGCACCGACTGTGGGAAACTATTCCAGTCGTTACACGCGTTTGAAAGACACCAGCAGAAACATGCTGGAAAGATTCTTCACCAATGCTCAGACTGTGGTAAAGTTTTTACCAGAGCATATCACTTGAGAAGACACCAGCATACACATAAAGAGAAGTCTAATCACTGCTCTGATTGTGGTAAGAGCTTCACTCGATTGGAACATCTAAAAAGACACCAGCGGAAACACAAGGAAAAGACACGTTACCACTGCTCTATGTGTGAGGAGAAGTTCTCTACACAGGCAATGTTAAATAGTCACCTGCAGGTACATGTTGGAGAGCTACCTCACcattgctctgactgtggaaaggcGTTCTCAGACAAAAGACAATTTGagatccaccagaaaagacatcAGCGAAAAACTGTAAAAAAGAGGTCTTACCTTTGCAGTGACTGTGGAATGACTTTCAGCAAGCCAAGCACATTTAAGGTGCACCAGAGATCTCACACAGGAGAAAAACCATACAGCTGCTcagagtgtgggaagagttttgtccAGTCCACCACACTCCGGATCCACCTCCAGTGGCACGCTGGGGAGAGGGCCAGCTACTCCTGCCCTGTTTGTGGGAAGACTTTCTCTCGCTCTAACAGTGTGAGGAGACACCAGAtggttcacacaggagagagacctcATGAGTGTCCCTGCTGTGGGAAACGCTGCTTCCGACGGAGTGCTCTGATCATACATATGAGgattcacactggagagaaaccataCATTTGTTCTGAGTGTGGGAAGAGGTTCTCCCAAGATGGCGACCGGAAACGACACCAGATAAGACaccaccctgacctctgacctgaagAGGACTGCAGGCACAGACAGGCTTCAGTAGAGGCACACCGATCCCAAATCCACCCTCAGCCCCTACCCTACTAGCTCATACCCCCTAGCCCCTATACCAGGGGGTTGCAAACTCATTCCTGGACGGTCTAGTGGTTTTTATTATTTCCTTTCCATTTGTGTCCAACTAACACCTAGACaatcaggtgaggggagttcctaatcAAGTTCAAGGGAGAAGCGACAACCGGCAAACACTCGACCCACCAGATATTGAGTTGACATCCCTGCCCTATACCCTCTACCCCGAGCTCATACATTTAGCTCCTAACCTCTAGCTCCTACTCCCTAGCTAGCCCATACCCTCTAGTAAATATCTGGTTTAAAGAACAGCTAAAATGTGAACCATTTCATGTCaggttgtttgttttgtttgcttTTCCATATCCTCCTTTAATTATACATTGCTAGGAGTTCCTAATCAAGTTCAAGGGAGAAGCGACAACCCGCAGACATTCGGGTGTCCAGACATTGAGTTTGACTTAATGGCTAcatttgactcatcacatactgctgctactgtttattatctatcctgttgcctagtcatttTATTTCTAcctgtatgtacatatctaccttaatTATCTCAaacctgcacatcgactcagtactggtacccccccaccccc

Function

NR:

description
oocyte zinc finger protein XlCOF6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602084.2 True 3215 mRNA 0.44 2 21527555 21534161

Neighbor

gene id symbol gene type direction distance location
LOC110523409 LOC106565015 coding upstream 5727 21518557 ~ 21521828 (+)
LOC110523407 LOC106568363 coding upstream 34120 21478685 ~ 21493435 (+)
LOC110523406 crybb1 coding upstream 50384 21473853 ~ 21477171 (+)
npm2b LOC106592477 coding upstream 239024 21277568 ~ 21288531 (+)
LOC110523400 LOC106568542 coding upstream 367415 21108129 ~ 21160149 (+)
LOC110523411 LOC106568349 coding downstream 44829 21578990 ~ 21597442 (+)
LOC110523412 LOC106568387 coding downstream 67872 21602033 ~ 21609081 (+)
LOC110523413 LOC106568345 coding downstream 82039 21616200 ~ 21622938 (+)
LOC110523414 cetn3 coding downstream 99371 21633532 ~ 21635979 (+)
LOC110523415 LOC106568324 coding downstream 135260 21669421 ~ 21684268 (+)
G377494 NA non-coding upstream 9309 21517745 ~ 21518246 (+)
G377455 NA non-coding upstream 72119 21450467 ~ 21455436 (+)
G377416 NA non-coding upstream 130441 21396701 ~ 21397114 (+)
G377405 NA non-coding upstream 147408 21379586 ~ 21380147 (+)
G377364 NA non-coding upstream 153846 21371266 ~ 21373709 (+)
G377505 NA non-coding downstream 16176 21550337 ~ 21550561 (+)
G377513 NA non-coding downstream 31113 21565274 ~ 21565606 (+)
G377517 NA non-coding downstream 34793 21568954 ~ 21569214 (+)
G377520 NA non-coding downstream 37048 21571209 ~ 21572272 (+)
G377523 NA non-coding downstream 43043 21577204 ~ 21577584 (+)
LOC110522817 LOC106568462 other upstream 690996 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 769054 20508074 ~ 20759255 (+)
G377022 NA other upstream 930692 20591480 ~ 20596863 (+)
G376320 NA other upstream 1543707 19983261 ~ 19983848 (+)
G378660 NA other downstream 638374 22172535 ~ 22231920 (+)
G378832 NA other downstream 969591 22503752 ~ 22506270 (+)
G378868 NA other downstream 1067949 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 1408131 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 2089803 23623921 ~ 23678038 (+)

Expression


Co-expression Network