LOC110523411 (LOC106568349)


Basic Information

Item Value
gene id LOC110523411
gene name LOC106568349
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21578990 ~ 21597442 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602088.2
ACTGTAGCCCATCGTGAACGCGGGCGCGCGACCTTGTCCAGCTGTTTTTGCAACCAAGATGACGAGCAACACCAGGTACAAGAGCCGAGCACTCAGATCAGAGGATGGAAGAGAGGAGAAGGAGTATGTGGGGTTTGCCACCCTCCCCAACCAGGTCCACAGGAAGTCAGTCAAGAAGGGGTTTGACTTCACCCTCATGGTGGCAGgAGAGTCTGGTCTGGGTAAATCTACTCTGGTCAACAGCCTTTTCCTCACAGACCTGCACAAGGACAGGAAACTCCTCAATGCTGAGGAGCGTATCAGTCAGACAGTGGAGATCACTAAGCACACGGTGGACATAGAGGAAAAAGGAGTTAAACTGAAACTGACCATCGTAGACACACCAGGGTTTGGAGACGCAGTCAACAACACtgagtgttgGAGGCCAATCACAGATTACATTGACCAGCAGTTTGAGCAGTACTTCAGAGATGAGAGTGGACTGAACAGGAAGAATATCCAGGACAACAGAGTCCACTGCTGCCTCTACTTCATACCCCCCTTTGGACacggGCTTCGTCCAGTAGATATAGAGTTTATGAAGGCTCTGCAGGACAAGGTCAACGTGGTTCCTCTCATCTCTAAATCTGACTGCCTTACTCCCAACGAGATCAGGAAACTTAAAGACCGGgtccgTGAGGAGATAGATAAGTTTGGGATAAAGGTGTACCAGTTCCCAGACTGCGACTctgatgaggatgaggaggcCAAACAGAAGGACAGAGAACTCAAGgagagcACTCCGTTTGCTGTGATCGGCAGTAACATGGTGGTGGAGACCAGAGGTCAGAAGGTCAGAGGGAGACTCTACCCCTGGGGCATCGTAGAGGTGGAGAACCAGTCTCACTGTGACTTTGTGAAGCTGAGGACCATGCTGATCAGGACCCACATGCATGACCTGAAGGACATCACCTGTGACTGTCACTATGAGAACTACAGGGCTCATTGTATACACACCATGACCAGTAAAATGAATACAGATAACCGTGTGGAGAGCCCGATTCCCATCCTACCCTTGTCCACCCCAGACGTGGAGACAGAGAAACTCATCAAGATGAAGGACGAGGAGttgaggAGGATGCAGGAGATGCTTCAGAAGATGCAGCAGCAGATGCAGCATGAGCAAGACCTGTGAgccctgacccctaacctctcactcctgacctctcacctctctcttctcacctaaTGATATGTGGAACGACTAACACAGGGTCAATCACGTGCTGGCCAATCACACTGCAACCTCACTCCAACTGAAACAGTACAATTCTATCTGGATGTTCTGAAATATTACACTCTCTTCTCAATAATGTGCATCCCTAACAGAGACACTGGACACAGGGTAAAACCAACACCAAACACTCTGGATGGGCCACACACCCTACACTGGATAAACACTTTTAAACAGGGACAAACATTTTGTCAACGATTTGTTGGTGTTgtgaaaccccccccccaaaaacgaTGCTTTGTTGGATGCAGTCAGAAGCCAAGACTATAGCCAAGCTTTATAGCATTATAGTAGATTTGCACCTTAGATTGCAGTTGGTGTCCAAGCTTGTTTTTGTATTTAAGGGAAGTAGTTTGGTACTGAATTAGACTGTTTATGATTATTGTTGAATATGTATTTTGCACTCTACTGGCTCACACagttaaaatgtgtgtgtgtgcatgtgtgtgcgtgtgtgtgtgtatatttttgtgtgtgtgagataagGAGAGAGTGTCTCTAAGTCAGCATTGACATAGAGACAGGCCACAGTGTCATTTCCTGTCCAACAGAAGTTATGAGACAAACCAAAGTTTTGAGAGATTCTCAAATCTTCTTGTCCCTTTGCTCCGTTGACAGACTAGCTTCTGTCTCTGAGGGTTCTCTTATGGAACAAGGGCAACGTGTTGCAGCACCATCAATGTTCTGAGAGTCTACTGAAGATTCTAGGAGATAAACACATTAGATCAAATTTCACTTGAGAAGATTAGATTACATCCTGgaaaatactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggatatgtgtatgtgtgcaccTGTGTGTTAATGTGGTGTTGATTAGCCTGTATGATGGTCCATCCCGTTGTAGTACGTAACATAGATGAATAGATCTCTCAGCATGGTCAAGGTTGTGTCCACACAGACACGGTGATGTCTCACACTGGTGCATATCACTCAATAAAAGCCCACTGTTGTACCT

Function

NR:

description
septin-5-like

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0031105 septin complex cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16948 CDC12; cell division control protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602088.2 True 2362 mRNA 0.47 12 21578990 21597442

Neighbor

gene id symbol gene type direction distance location
LOC110523408 LOC106565015 coding upstream 44829 21527555 ~ 21534161 (+)
LOC110523409 LOC106565015 coding upstream 57162 21518557 ~ 21521828 (+)
LOC110523407 LOC106568363 coding upstream 85555 21478685 ~ 21493435 (+)
LOC110523406 crybb1 coding upstream 101819 21473853 ~ 21477171 (+)
npm2b LOC106592477 coding upstream 290459 21277568 ~ 21288531 (+)
LOC110523412 LOC106568387 coding downstream 4591 21602033 ~ 21609081 (+)
LOC110523413 LOC106568345 coding downstream 18758 21616200 ~ 21622938 (+)
LOC110523414 cetn3 coding downstream 36090 21633532 ~ 21635979 (+)
LOC110523415 LOC106568324 coding downstream 71979 21669421 ~ 21684268 (+)
LOC110522823 NA coding downstream 91726 21689168 ~ 21695622 (+)
G377523 NA non-coding upstream 1406 21577204 ~ 21577584 (+)
G377520 NA non-coding upstream 6718 21571209 ~ 21572272 (+)
G377517 NA non-coding upstream 9776 21568954 ~ 21569214 (+)
G377513 NA non-coding upstream 13384 21565274 ~ 21565606 (+)
G377505 NA non-coding upstream 28429 21550337 ~ 21550561 (+)
G377533 NA non-coding downstream 14677 21612119 ~ 21612381 (+)
G377535 NA non-coding downstream 17636 21615078 ~ 21615793 (+)
LOC110523419 LOC106568313 non-coding downstream 168305 21765705 ~ 21769900 (+)
G377619 NA non-coding downstream 182946 21780388 ~ 21780616 (+)
G377628 NA non-coding downstream 193139 21790581 ~ 21790798 (+)
LOC110523400 LOC106568542 other upstream 420071 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 742431 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 820489 20508074 ~ 20759255 (+)
G377022 NA other upstream 982127 20591480 ~ 20596863 (+)
G376320 NA other upstream 1595142 19983261 ~ 19983848 (+)
G378660 NA other downstream 575093 22172535 ~ 22231920 (+)
G378832 NA other downstream 906310 22503752 ~ 22506270 (+)
G378868 NA other downstream 1004668 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 1344850 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 2026522 23623921 ~ 23678038 (+)

Expression


Co-expression Network