LOC110523412 (LOC106568387)


Basic Information

Item Value
gene id LOC110523412
gene name LOC106568387
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21602033 ~ 21609081 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602089.2
GGCACACCGAGAAAAACGGATAGAGACAATGATTTTTCTATGGGGTCATACGTTGACGGACAACAGAGAGTTAACATTTTGATGGATTAAACAGATTCGTAGTGCATTCCTTGAGCATTTAATCCATTTATGTGTGGCTGGGGCCTATTGGGATGCTTTGCACAACCTTGACCCCAGAACCCACATACCATGCACTTAGAGGAAGTTTCAACATCCATGTAAAAAGGTCAGAATTCACAGAGCATTCAGAATACTCATACAAAATACTCAGAATACACTCTCGATGTGGAAGTTCAACCAGCAAGGCTCCAGATGACTTCCTGTGTGATGTACACACAAAAAAAGAGTTGGCTCATCCACCCCTACTGTCTGACATCTCTCTGGGAgcactatgaaggaacactgGTTTCCTCTTTCCCCTGCCTTTCAGAGACTGCTGTTCATCCTGGTGttgctgtgtctctccctctcctgctctggGAGGACCTGGGCTCAGAGGAAACTACCCTGCGATGTCATCTCTCTCAACCAATCAGAGTCCTTTGACTGCTCGGACAGGAAGCTACTCCAGGTACCCCAGGATATCAGCCGGAATGCCACACGGCTCGACCTTTCCTCTAACAGGATCAAGAAACTCTCCGGCATCTCGTTCAGGAACCTCCGAAACCTGACTCGACTAGACCTTAGCAATAACTTCCACCCCCAGAAACATCCTCTGACAATAGAGAACCAAACATTCTCCATGCTGGATCAGCTCAAGGAACTGCTCCTTGATAGTAATGGTCTTTCTGCAGTGCCAAGTGCCCTTCCATCCAAGCTGCGGTTTTTGAGCCTGAAGTTCAACTGCATCAAAACCATCAGGCCAAACGACTTCATGCATGTCAGACTCTTAGAAACAATCCACTTAATTGGAAATTGCGACTACAAGAGTGTCTGTAATGGACTAGTCATCGGAAACAGAACTTTCTCCCACCTCACCAACCTTGCTAGTTTATCGCTGTCAAACAACAGACTGATAGGTGTCCCCCTgttcctccccccatccctccagcaGCTCAAACTCAAACAGAACACTATCACCTACATTCACCAGCATGATCTTAGTGGCCTCACTAGCCTGAGGCTTCTGGGCCTGTCAGGTAACTGCCCTGTGTGTTCTAACACCCCGTTTTTCTGCTCGCCCTGTAATACACCCAATGGGGCACTACAGATACACCCATATGCCTTCAGGAAGCTATCCAAGCTGCAGGAGCTGAGACTATCCGGAAACTCTCTAgatcacctacagtcctcctggTTTGAGAACCTCACCAACTTGCGCTACCTGTACCTTTCATTCAATCGTCTAGTTGGTGAGATAGCCAACGGGGACTTCCTCTCTGTGTTACCCGGCATAGAGGTGATGGACTTGTCTTACAATCACCCTGGACAATCTTCATATTCCCACAACTTGAAGCTCTCTAGGAACTTTTCCAACCTGACATCTCTGAAGACATTACACCTAGAAAACTATGTTTTTTCAACTCTTCACAAAAATGACTTGAACCCACTTTACAATTTATCTCACCTGTCTGTGCTCAATCTGGGAACTAACTTTATCTATCAGACAAACCCCTCATTGTTTGGCATGTTCCACAACTTGTCCAGTGTTGGCCTCTCTGAGAACAAATTTGCTTTCCTGTCTAAGAAAGAAGATGTTTTGTCAACATGTGGGTGTAGCTGTGGCTATGAGCTGAATAGAGACAGGTTTGGGCCTTACGTACACAAGGATCGACTCTTTCGTCAACATCTGCCTAACATTAAGCCAAAGTGTATTGCGTACGGTTCAGTGCTTGACCTTAGCAGAAACAACATCTTCCACATAAACCCTGATATGCTGCAaggcctggacaacacagctTGTCTCAACCTGTCATCTAACTCCATTGGAGACATGTTCAACGGTAGTGAGTTTGTACATTTCCCCAAACTTAAGTACTTGGATCTATCCCGGAATAAGATCTACCTGCACTATGAGCATGCATTCAGTGAGCTAACAGAACTGGAGGTGTTGGACCTGAGTCATAATAATCATTACTTTGTGGTGGCAGGGCTAAACCACAGCTTAGCATTCATGGAAAACCTGAGCTCTCTGAAGGTTTTGAACCTGAGCTGGAACGAGATCAGCACCCTCACTCATAACAACATCTCAAGCAGCTCCCTACAGGAGTTGGACTTCCAAGGCAACCGCCTAGACATCATGTGGAAAATATGCCAGAACTATGAACTTTTCAGAGCGCTCCAAAACCTGACTTCCCTGGATCTGTCATACAACAAGCTCCACCGTGTACCGCCTGAGGTCTACAAACACTTCCCCAAGACCCTGAGACGCCTGTCTCTGAGTAAAAACCGACTGAAGGTCTTTGACTGGGAGAGGCTCACACAACTACCGCATCTGGAGGAGCTGGACTTGAGTAAGAACAAACTGGAGCAGGTGGCCTGTGCTTTAACCAGTTCACTAAAGTTCCTGGACCTGAGCCATAACAGGATTTCCCAGCTAGCGCCTGGTTTCCTCAGGGGCGCCAGGAGCCTGTATGTGCTGGACCTCAGCTTCAACCTGTTGGAGCTCATCAACCAGACCACATTTGAGTCTGGAGCAGAGAACCACCTCCAGCAGCTGTCCCTACAGGGCAACCCGCTCCACTGCACCTGTGACCTGTTGGACTTCCATCTGTGGATGAGGAGCAATGAGGTGGAGCTCCCTCTGCTGGCTACTGAGGTGACATGCGACATGCCCGTGGAGAGGAGAGGCAAGTCTGTGTTGAGCTATGACATAGAGGAGTGTGTGAACGATGAAAACGCAATGGCCTTCTGCATCATCACGTCATTTCTCATCATTCTCACTCTGTTGGTATCTCTCACAGCACACCTGTTCTACTGGGATCTCTCCTATATTCTGGACTACTGTGGGGCCAAGATGAAGCATCACCGTCGCTTAGTGCCCACAGACTTTATCTACGACGCCTTTGTCATGTATGACACCGCAGACCCGCTGGCTTCTGATTGGGTATTAAACCATCTAAGGGTCGAGCTAGAGGAGCGTGGAGAGAGGGCACGATCCCTCTGCCTGGAGGAGCGTGATTGGTCACTGGGTATGCCTGTCATGGACAACCTGTCCAATAGCGTGCGGCAGAGCAGGAAGACAGTGTTTGTGCTGACGGACGGCTTCCTGTTGCGTGGTGTAGTCAAAATGGCTGCCCTGCTGGTGCAGCAGCGGctggtggaggagggggtggacTCCATGGTGCTGCTGTTACTGCAGCCCCAGGTCTTGCAACACTCACGCATCCTCCACCTGCGCAGGCGGCTCTGCAGGCGCAGTGTTCTGGAGTGGCCCGCGGATGCCAGTCCAGCTGCCCAGCGATGGTTCTGGCACCACCTGAAGAGAACCATTAGGAAAGATCAGATAGGCACTCACACATCCCTACACAGCACATACTTCACTGGGCGGTGAACCTACAGACATTAGAGGAACGTATGACTCTTACAAAGTAAAAGTTAAGGATATGGGTGACCTAAGACTACTCTATAATTTGGAATATTAAATGTGGAGAGAGCATAAAGACTGTGATGAAGGCAACATCGGCAATTTGCTGGCATCAAAGCACAGTGTGCGGTTCACCCGCACCCTCCCCAGGAGCGAGACTTCCCTGTGGCGCACCAAAGTTCCTAGTGCCCTTGAGGCGTGACATTTGACGTTCTCAATGTATTTTTATGTCTGATTTATTTCTAAAGTTAATATAAAGAGCTGAACATGTTGATATGACTCTCTGTAGGCCTATTGCATGTTTTATGGTTTTTCCTTTTCAGAGACGTTGTCCTAATCTGGTCGCCGGTCTGATGGCTGGTTGTTCCCATAATGTTGCAAGGTGATTTGGTTAGAAGAGAGTTGCGATGTTTTCCTTCTTTTGTTTCGGCCACCAGAGTGATGCTAATTAAATGTTGAGGATATTGTCATTTGAGTTTCGTCCGGGATGGTTTAAAGGAGAATGTTTTGCCATGTTCAAATGTAATTATTGTATTTTCCAAGCTCCTAGCTATACCTGCGTACAATACATGCAGTATTGTTGTTATCTTAGACTTTTTGACCTTTTACCTAGATGACTTATGCGGTTTCTTCTTTTAGATAATTGCATCTTATTGGATTTATTGTAATACATGTTGATTCATTTTAAATTGATACATGACTGCAGTCCTCATATTTCAGAGCGATACTTATTGACTGTTGATGCGGCTTATTGGTAAAAAATGAATTACACACATTGTATTCTTTtagatacacacactgataccTCTGCTTTAAACTGACTTCACTATTTATTACTAGACTATGACTGCAAGGATCAGCTCATGGTTCTAGCCTCTTAAACATGTCATTATGAAGCCAGATTAATTAGGTTAGAATTGCTCATACCCTAATTCTGTCATCCtcagcaaattggagtggatttTCATCCGATACAAGCATGCAACAGTGTGATTGAATATTTGTAATATTGTGATGAGGGCCAATGAATATGATGGGACACATACAATCATGCATGAAAAATGATAATAATTATGACCATATGATCATATAAGCCAGAAAGGCCTATCAGGTACATGCACTTATAAATAGAGGGTGAATTGTCCTGTTCCTGAAATCTGCttctgcattcatcccagtcatcaacaGACAGAGCATTGGGgaaggtgcatgtctgacatcagtgtgtgcacaattacaatgataatttaatatggtaaatgtaaaaatatatgaatAACATAAGTGTACTGTTGACacgtaggctatggtgtaatggaatgttttgccttgtgtgataggttttgtgggttataacaggttatgacacgttttgtcagctgttatgacatattatgtcATGGTTAGGATTATTGGGTGTCAAGTGTTACCCAATTTTTCGTAATTTCTCTCAGTCAagctgtgaatttcaaacacagattcaaccacaaagaccagggaggttttccaatgcatcgcaaagaagggcaccttaaaaacttacccaga

Function

NR:

description
toll-like receptor 8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602089.2 True 5074 mRNA 0.46 2 21602033 21609081

Neighbor

gene id symbol gene type direction distance location
LOC110523411 LOC106568349 coding upstream 4591 21578990 ~ 21597442 (+)
LOC110523408 LOC106565015 coding upstream 67872 21527555 ~ 21534161 (+)
LOC110523409 LOC106565015 coding upstream 80205 21518557 ~ 21521828 (+)
LOC110523407 LOC106568363 coding upstream 108598 21478685 ~ 21493435 (+)
LOC110523406 crybb1 coding upstream 124862 21473853 ~ 21477171 (+)
LOC110523413 LOC106568345 coding downstream 7119 21616200 ~ 21622938 (+)
LOC110523414 cetn3 coding downstream 24451 21633532 ~ 21635979 (+)
LOC110523415 LOC106568324 coding downstream 60340 21669421 ~ 21684268 (+)
LOC110522823 NA coding downstream 80087 21689168 ~ 21695622 (+)
LOC110523419 LOC106568313 coding downstream 156624 21765705 ~ 21769900 (+)
G377527 NA non-coding upstream 10328 21589495 ~ 21591705 (+)
G377523 NA non-coding upstream 24449 21577204 ~ 21577584 (+)
G377520 NA non-coding upstream 29761 21571209 ~ 21572272 (+)
G377517 NA non-coding upstream 32819 21568954 ~ 21569214 (+)
G377513 NA non-coding upstream 36427 21565274 ~ 21565606 (+)
G377533 NA non-coding downstream 3038 21612119 ~ 21612381 (+)
G377535 NA non-coding downstream 5997 21615078 ~ 21615793 (+)
G377619 NA non-coding downstream 171307 21780388 ~ 21780616 (+)
G377628 NA non-coding downstream 181500 21790581 ~ 21790798 (+)
LOC110523400 LOC106568542 other upstream 443114 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 765474 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 843532 20508074 ~ 20759255 (+)
G377022 NA other upstream 1005170 20591480 ~ 20596863 (+)
G376320 NA other upstream 1618185 19983261 ~ 19983848 (+)
G378660 NA other downstream 563454 22172535 ~ 22231920 (+)
G378832 NA other downstream 894671 22503752 ~ 22506270 (+)
G378868 NA other downstream 993029 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 1333211 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 2014883 23623921 ~ 23678038 (+)

Expression


Co-expression Network