LOC110523413 (LOC106568345)


Basic Information

Item Value
gene id LOC110523413
gene name LOC106568345
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21616200 ~ 21622938 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977040.1
ATACTAGAAAGTGGAGGAGGAGACCATTAGAAATGAACGCACTGGGAGGATGACAGCTTTTAGCCGCTGCTGTAACCCTGAACCTCTGACATCCATATGAACCGTCAGCGAGAGGACCACTATCCCAGCCCGCAGGGCGCATCCTCTATCCTGAGCAAAAAGCGAGGGGTCGTGGGCGGAGGGTTCCTTATGATTTCTCAGTTTTCATAGACGTTCTCTAACACCATGGTGCTGGGAAAGGTGAAAACTTTAGCGGTCTACTTCGACTATCTGAACGACAACAACGTCCCCGTTTACTCCGGCGGGGATTCGGTCTCGGGGAGGGTGATAATCGAAGTCACCGGCGAGGTTCGCGTCAAAACGTTGAACATAACCGCCAGAGGCATAGCCAAGGTGCGGTGGACCGAGTCCCGGAACGCCGGAGCCAACACTGCCTACACTCAGAATTACACCGAGGAGGTGGAATACTTAAACCATAGCGACACGttaataggagaggagagagATGAGGACAGTACAGAGGAGACCCTCACTGTTCTCAACACAGGATTACACGAATTCGCCTTTAGCTTCCTGCTACCACAGAtGCCCCTGGCCACGTCGTTTGAAGGGAAGCATGGCAGTGTGAGGTACTGGGTGAGAGCAGAGCTCTACAGACCATGGCTGCTGCCTTTCAAAGTCAAGAAAGAGTTTACTGTGTTTGAACACATCGATATCAACACACCACTGCTGCTGGCCCCTCAAGCTGGCACCAAGGACAAGACCTTATGTTGTTGGTTCTGTGCCTCGGGACCCATCTCACTCAGCGccaagatagagaggaagggataCACGCCAggTGAGTCCATCCAGATCTTTGCAGAGGTGGAGAACTGTTCGTCCAGGGTGGTGGTGCCCAAGGCAGCGCTGAGCCAGACCCAGACCTACTTCGCCAAGGGAAAGGCCAGGCAGCTCCAGCAGCAGATGGCAGCCCTGCGTGGGGACACCCTACCCCAGGGGAAGAGCCAGAGCTGGGATGGAAAACTCCTCCACATACCCCCAGTGTCCCCATCCATCCTGGACTGTCCACTCATCAGAGTGGAGTACTCACTGGTGgtgtATGTGGACATCCCTGGGGGGTTGAACCTGTCTCTATCGTTGCCGTTGGTGATCGGGACCATCCCCCTCCATGCATTCACCAATCGAACAAGCAGCATCAGCAGCTACTGTAGTAGCATCAGCTGGCCAGAGAGACCTGAGGCTCCCCCCAGCTACAGTGACTTGGTGGTGACAGAGGAGCAGAGGTGGGGCTGTCTGGAGCGCtgtgaggggtcagaggtcaacgAAGAGGACCAGGGAACACTGCGCGCTTACATTACAGAGTTCAGATACCAGCCCCCGCCGCTCTACTCCgagGTTGACCCTAACCCAGAGCCGGGCTGTGGAGGTCAGGTGGTAAGGAGACCCGACCTCTGCCCCTCTCGCTGAGCACAACACTGACCTGCTCAGAGCAGACAGGCATCTACACCTACAGATGGATCCAACATGGCCGCTGCTATAGCCCCCTACTGGAGccagtcacctacagatggatccAACATGGATGCCGCTATAGCCCCCTACTGGAGccagtcacctacagatggatccAACATGGCCGCCGCTATAACGTCCTACTGGAGccagtcacctacagatggatccAACATGGCCGCCGCTATAACCCCCTACTGGGGCCAACATTGCGTCTCATCCTTAGTTTTCTCGGGTACATAGATCAACAGATGCAGGGATGTCAGCTCTGATAGACACTCTGTGGAGAGGCCAGGAGACGCCTCAGTCTGACCAGCATCACGGTTCTCTGCTGGTCAGAAATAATTGATTGTCCTTAGACCAAGCTTCTGGTACATATGACCATTACGTGGCACATCTAAGActagaaaggagaggagaagaagaaaatagATAATCCACTGTTGGACTGTTGGAAACAGTGGTCAGGATCTCCTCCAGCCTCAGAGTGAATTTTGCACATGCCTCTCACTGTTTTTCTACTTAACTTCCATATCTTTTCTTCCTCAACTGTCATATATGCTGGAACATGTCCGTTGTCTTCTCACCACCATTACTACTTAACTAGAAACAACACCGATCAAAGACTCTTTTAGAACAAAGTAACTAAGAAACAAATGAAAGGAAATGTTTTTAGAGAGGTGTTATTGTGTCTTGGGTTTCCTGAATGGGGAATGTGGTACATGGTGAAATGActagtgtgtgtgttcagacactGGTGTATCTGTGaagcactcactcactctctctgtctttcaggtGTCTTTCCTCACTAAACCCTCCATAGATACAGTACCCTACTAAGCACTTGTTTGATTGTAGTATGTGGACATATGACACCAGAAAGAAGCTCTGTATTTACATAAGAGGCAAAGAAACAGCCagatgtaaaaataaaataagaaaaaaatacatttgaaatgtttacagGTCAATTGTCCTTCAAAGTTGATCTTCACCTCCAAACAAAGTgcaatatatttttgtatttgtcGTTTTTCTGTTTGTGTAAGTGATGCCATTATAGCCATTACTGATCTGAATGCTATCATGATCTTCCTTTGTTTGAAATAAAGAAGCCGTTTTGTAGAAACTGTGAA
>XM_036977041.1
GGACCAGGTTAGCTTTCCTCCAATGGCAAGCTAAATGAGGACAGTACAGAGGAGACCCTCACTGTTCTCAACACAGGATTACACGAATTCGCCTTTAGCTTCCTGCTACCACAGAtGCCCCTGGCCACGTCGTTTGAAGGGAAGCATGGCAGTGTGAGGTACTGGGTGAGAGCAGAGCTCTACAGACCATGGCTGCTGCCTTTCAAAGTCAAGAAAGAGTTTACTGTGTTTGAACACATCGATATCAACACACCACTGCTGCTGGCCCCTCAAGCTGGCACCAAGGACAAGACCTTATGTTGTTGGTTCTGTGCCTCGGGACCCATCTCACTCAGCGccaagatagagaggaagggataCACGCCAggTGAGTCCATCCAGATCTTTGCAGAGGTGGAGAACTGTTCGTCCAGGGTGGTGGTGCCCAAGGCAGCGCTGAGCCAGACCCAGACCTACTTCGCCAAGGGAAAGGCCAGGCAGCTCCAGCAGCAGATGGCAGCCCTGCGTGGGGACACCCTACCCCAGGGGAAGAGCCAGAGCTGGGATGGAAAACTCCTCCACATACCCCCAGTGTCCCCATCCATCCTGGACTGTCCACTCATCAGAGTGGAGTACTCACTGGTGgtgtATGTGGACATCCCTGGGGGGTTGAACCTGTCTCTATCGTTGCCGTTGGTGATCGGGACCATCCCCCTCCATGCATTCACCAATCGAACAAGCAGCATCAGCAGCTACTGTAGTAGCATCAGCTGGCCAGAGAGACCTGAGGCTCCCCCCAGCTACAGTGACTTGGTGGTGACAGAGGAGCAGAGGTGGGGCTGTCTGGAGCGCtgtgaggggtcagaggtcaacgAAGAGGACCAGGGAACACTGCGCGCTTACATTACAGAGTTCAGATACCAGCCCCCGCCGCTCTACTCCgagGTTGACCCTAACCCAGAGCCGGGCTGTGGAGGTCAGGTGGTAAGGAGACCCGACCTCTGCCCCTCTCGCTGAGCACAACACTGACCTGCTCAGAGCAGACAGGCATCTACACCTACAGATGGATCCAACATGGCCGCTGCTATAGCCCCCTACTGGAGccagtcacctacagatggatccAACATGGATGCCGCTATAGCCCCCTACTGGAGccagtcacctacagatggatccAACATGGCCGCCGCTATAACGTCCTACTGGAGccagtcacctacagatggatccAACATGGCCGCCGCTATAACCCCCTACTGGGGCCAACATTGCGTCTCATCCTTAGTTTTCTCGGGTACATAGATCAACAGATGCAGGGATGTCAGCTCTGATAGACACTCTGTGGAGAGGCCAGGAGACGCCTCAGTCTGACCAGCATCACGGTTCTCTGCTGGTCAGAAATAATTGATTGTCCTTAGACCAAGCTTCTGGTACATATGACCATTACGTGGCACATCTAAGActagaaaggagaggagaagaagaaaatagATAATCCACTGTTGGACTGTTGGAAACAGTGGTCAGGATCTCCTCCAGCCTCAGAGTGAATTTTGCACATGCCTCTCACTGTTTTTCTACTTAACTTCCATATCTTTTCTTCCTCAACTGTCATATATGCTGGAACATGTCCGTTGTCTTCTCACCACCATTACTACTTAACTAGAAACAACACCGATCAAAGACTCTTTTAGAACAAAGTAACTAAGAAACAAATGAAAGGAAATGTTTTTAGAGAGGTGTTATTGTGTCTTGGGTTTCCTGAATGGGGAATGTGGTACATGGTGAAATGActagtgtgtgtgttcagacactGGTGTATCTGTGaagcactcactcactctctctgtctttcaggtGTCTTTCCTCACTAAACCCTCCATAGATACAGTACCCTACTAAGCACTTGTTTGATTGTAGTATGTGGACATATGACACCAGAAAGAAGCTCTGTATTTACATAAGAGGCAAAGAAACAGCCagatgtaaaaataaaataagaaaaaaatacatttgaaatgtttacagGTCAATTGTCCTTCAAAGTTGATCTTCACCTCCAAACAAAGTgcaatatatttttgtatttgtcGTTTTTCTGTTTGTGTAAGTGATGCCATTATAGCCATTACTGATCTGAATGCTATCATGATCTTCCTTTGTTTGAAATAAAGAAGCCGTTTTGTAGAAACTGTGAA

Function

NR:

description
arrestin domain-containing protein 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977040.1 False 2651 mRNA 0.50 8 21616200 21622938
XM_036977041.1 True 2180 mRNA 0.49 8 21618922 21622938

Neighbor

gene id symbol gene type direction distance location
LOC110523412 LOC106568387 coding upstream 7119 21602033 ~ 21609081 (+)
LOC110523411 LOC106568349 coding upstream 18758 21578990 ~ 21597442 (+)
LOC110523408 LOC106565015 coding upstream 82039 21527555 ~ 21534161 (+)
LOC110523409 LOC106565015 coding upstream 94372 21518557 ~ 21521828 (+)
LOC110523407 LOC106568363 coding upstream 122765 21478685 ~ 21493435 (+)
LOC110523414 cetn3 coding downstream 10594 21633532 ~ 21635979 (+)
LOC110523415 LOC106568324 coding downstream 46483 21669421 ~ 21684268 (+)
LOC110522823 NA coding downstream 66230 21689168 ~ 21695622 (+)
LOC110523419 LOC106568313 coding downstream 142767 21765705 ~ 21769900 (+)
LOC110523420 LOC106568307 coding downstream 175402 21798340 ~ 21808924 (+)
G377535 NA non-coding upstream 407 21615078 ~ 21615793 (+)
G377533 NA non-coding upstream 3819 21612119 ~ 21612381 (+)
G377527 NA non-coding upstream 24495 21589495 ~ 21591705 (+)
G377523 NA non-coding upstream 38616 21577204 ~ 21577584 (+)
G377520 NA non-coding upstream 43928 21571209 ~ 21572272 (+)
G377619 NA non-coding downstream 157450 21780388 ~ 21780616 (+)
G377628 NA non-coding downstream 167643 21790581 ~ 21790798 (+)
G377629 NA non-coding downstream 167940 21790878 ~ 21791428 (+)
G377630 NA non-coding downstream 168564 21791502 ~ 21791809 (+)
LOC110523400 LOC106568542 other upstream 457281 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 779641 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 857699 20508074 ~ 20759255 (+)
G377022 NA other upstream 1019337 20591480 ~ 20596863 (+)
G376320 NA other upstream 1632352 19983261 ~ 19983848 (+)
G378660 NA other downstream 549597 22172535 ~ 22231920 (+)
G378832 NA other downstream 880814 22503752 ~ 22506270 (+)
G378868 NA other downstream 979172 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 1319354 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 2001026 23623921 ~ 23678038 (+)

Expression


Co-expression Network