LOC110523414 (cetn3)



Basic Information


Item Value
gene id LOC110523414
gene name cetn3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21633532 ~ 21635979 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021602091.2
ATCAACGAAACAGGCGCGGACTAACGGATTTGCTACAAGATAGTTTGTTGTGATTTTGGAAGCTGGCTTTTGCCTGTTACCGGTTCACGTTTTTGTCGGATTCTCTTGACATTTTAGGTCTACATAGCACAACTTGAATGATGAGTCTGTCTTTAAGGACTGAGCTGGCAGTGGATAAAACCAAgcggaagaagaggagagagttgaCTGAGGAGCAAAAGCTTGAAATCAAAGAGGCGTTTGAGCTGTTTGacacagacaaagacaaagagaTAGATTACCATGAACTCAAGGTGGCAATGAGAGCTCTGGGTTTTGAGGTGAAGAAAGTGGATGTGCTGAAGATACTAAAAGATTACAACAGAGAAGGCAATGGCAAAATAACTTTTGATGACTTTAATGAAGTCGTGACAGACCGTATGCTACAGCGGGACCCTAAGGAGGAGATCCTGAAGGCCTTTAAGCTGTTTGATGATGACGACTCAGGGAGGATCAGCATGAGGAACCTGAGACGTGTGGCCAGAGAGCTTGGAGAGAGCATCACAGATGAGGAGCTGCGCAGCATGATCGATGAGTTTGATACAGACGGAGACGGAGAGAtcAACCAGGAGGAGTTTGTTTCCATAATGACTGGAGACTCCTGATTAGTGAGCAGCTGCTTTGGGGGCTTGGCTAGGAGGCTGAGGCTGTAGATTCACTGTGGGATGGATGGGTCCTCCCAGGTCACTGAGGAACTTCTGGAGAGGTtaccttgtctcctttccttcatctaaACTGACTTAAAATATCTGGccaggtgaaggagaggaggtaagGAAGCCACTGTAGTCTATTTGGACTCATCGTCTGGCCCAGTAGCACTGCTTTGGTTCTTGTCTTTGttgaaacatgttttttttataagtCTGATCCAACTACAACTATAGATAGTGTATGTTCTTTTATTTTTAGTACAGATCTTTCAAATGCAAATGGTATTCCCCCCAAAAAGAAGATTTGCTTGCTGTGATTTATGTTTGTTCCCTACAGAAAACTGTAgaggttatattacaggtcatctCTCTGAAACATTCCATGTAAACTTCAGTTTTCAATAGTATTTCTGGATGGTGGTTTAAACAGCAAATACAAACAGGTTATACACTCCCACATTTTGTAGTTTAATAGAccatttttatttgattattaCCTTGTTTctttgtgttatttattttacataaTAAACCAAATTTGACTGACTTCTGCTCTTAA

Function


symbol description
cetn3 Predicted to enable calcium ion binding activity and microtubule binding activity. Predicted to be active in microtubule organizing center. Orthologous to human CETN3 (centrin 3).

NR:

description
centrin-3

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K16466 CETN3, CDC31; centrin-3

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021602091.2 True 1251 mRNA 0.42 5 21633532 21635979

Neighbor


gene id symbol gene type direction distance location
LOC110523413 LOC106568345 coding upstream 10594 21616200 ~ 21622938 (+)
LOC110523412 LOC106568387 coding upstream 24451 21602033 ~ 21609081 (+)
LOC110523411 LOC106568349 coding upstream 36090 21578990 ~ 21597442 (+)
LOC110523408 LOC106565015 coding upstream 99371 21527555 ~ 21534161 (+)
LOC110523409 LOC106565015 coding upstream 111704 21518557 ~ 21521828 (+)
LOC110523415 LOC106568324 coding downstream 33442 21669421 ~ 21684268 (+)
LOC110522823 NA coding downstream 53189 21689168 ~ 21695622 (+)
LOC110523419 LOC106568313 coding downstream 129726 21765705 ~ 21769900 (+)
LOC110523420 LOC106568307 coding downstream 162361 21798340 ~ 21808924 (+)
LOC110523421 LOC106568255 coding downstream 180799 21816778 ~ 21822877 (+)
G377535 NA non-coding upstream 17739 21615078 ~ 21615793 (+)
G377533 NA non-coding upstream 21151 21612119 ~ 21612381 (+)
G377527 NA non-coding upstream 41827 21589495 ~ 21591705 (+)
G377523 NA non-coding upstream 55948 21577204 ~ 21577584 (+)
G377520 NA non-coding upstream 61260 21571209 ~ 21572272 (+)
G377619 NA non-coding downstream 144409 21780388 ~ 21780616 (+)
G377628 NA non-coding downstream 154602 21790581 ~ 21790798 (+)
G377629 NA non-coding downstream 154899 21790878 ~ 21791428 (+)
G377630 NA non-coding downstream 155523 21791502 ~ 21791809 (+)
LOC110523400 LOC106568542 other upstream 474613 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 796973 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 875031 20508074 ~ 20759255 (+)
G377022 NA other upstream 1036669 20591480 ~ 20596863 (+)
G376320 NA other upstream 1649684 19983261 ~ 19983848 (+)
G378660 NA other downstream 536556 22172535 ~ 22231920 (+)
G378832 NA other downstream 867773 22503752 ~ 22506270 (+)
G378868 NA other downstream 966131 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 1306313 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 1987985 23623921 ~ 23678038 (+)

Expression



Co-expression Network