LOC110522823


Basic Information

Item Value
gene id LOC110522823
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21689168 ~ 21695622 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110522823
ATGGGGCCTAACCAGGGAGAGGGGGGCCGAACACTGCCAACAACCTACCCTCGACCCCCTAGGCGGCGTCACTACATCCACCCTGCTCTTTTCACCAGGAAGAAAGGGGGGAGACGGCCAGAGAGGGATGGACAAACCCAGGGAGGGGTGTCCGACCACCGGAGAGAGGTCCCGGCCCCTGCCTGTGGTTCTGTTAAATTCCCCCAGGGAGCCGGAGCCGACCCCTGGACAGGGGCTCCGATCCCCACTGTAGCCACTTCATCCAGCCAGCTCCCTGACCCAAGAAGAAGAGGGCAGAGTGCCCAATattggtcagaccacAGAGACGTGTCACTGCCCACCAACCTCAAACTGAGGATAAAATGGACTAAGCTGACCTCAGAATACCTCAAAGAGGGGGATGTGTTTGTTGCCATGGGTTTCCACAAGCGGAGTTACGGACATTTCCATGGACGCATCTACTTACAGGACTCGGCTCCTACCGATGCGTCGCTGGTCATCACAGAGCTCACACTGGAGGATTATGGGAGATATAAGTGTGAGGTCATCGACGGGATGGAAAACGGCACGGGTGTGGTGTCTCTGGACCTGCAAGGtatCATCTACCCCTACTTCCCTCAGCTGGTTCGTTACAACCTGAACTTCTTTGACGCTGAGTGGGCATGTTCCGATCAGGACTCCATCATGCGTCGTTTGACCAGCTGTATGAGGCTTGGCATGGGGGTTTGGACTGGTGCAACGCAGGGTGGGGGAGTGATAGGTAG

Function

NR:

description
hyaluronan and proteoglycan link protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110522823 True 764 mRNA 0.57 4 21689168 21695622

Neighbor

gene id symbol gene type direction distance location
LOC110523415 LOC106568324 coding upstream 4900 21669421 ~ 21684268 (+)
LOC110523414 cetn3 coding upstream 53189 21633532 ~ 21635979 (+)
LOC110523413 LOC106568345 coding upstream 66230 21616200 ~ 21622938 (+)
LOC110523412 LOC106568387 coding upstream 80087 21602033 ~ 21609081 (+)
LOC110523411 LOC106568349 coding upstream 91726 21578990 ~ 21597442 (+)
LOC110523419 LOC106568313 coding downstream 70083 21765705 ~ 21769900 (+)
LOC110523420 LOC106568307 coding downstream 102718 21798340 ~ 21808924 (+)
LOC110523421 LOC106568255 coding downstream 121156 21816778 ~ 21822877 (+)
LOC110523423 LOC106568289 coding downstream 146446 21842068 ~ 21847237 (+)
LOC110523424 LOC106567937 coding downstream 258461 21954083 ~ 21958510 (+)
G377535 NA non-coding upstream 73375 21615078 ~ 21615793 (+)
G377533 NA non-coding upstream 76787 21612119 ~ 21612381 (+)
G377527 NA non-coding upstream 97463 21589495 ~ 21591705 (+)
G377523 NA non-coding upstream 111584 21577204 ~ 21577584 (+)
G377520 NA non-coding upstream 116896 21571209 ~ 21572272 (+)
G377619 NA non-coding downstream 84766 21780388 ~ 21780616 (+)
G377628 NA non-coding downstream 94959 21790581 ~ 21790798 (+)
G377629 NA non-coding downstream 95256 21790878 ~ 21791428 (+)
G377630 NA non-coding downstream 95880 21791502 ~ 21791809 (+)
LOC110523400 LOC106568542 other upstream 530249 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 852609 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 930667 20508074 ~ 20759255 (+)
G377022 NA other upstream 1092305 20591480 ~ 20596863 (+)
G376320 NA other upstream 1705320 19983261 ~ 19983848 (+)
G378660 NA other downstream 476913 22172535 ~ 22231920 (+)
G378832 NA other downstream 808130 22503752 ~ 22506270 (+)
G378868 NA other downstream 906488 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 1246670 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 1928342 23623921 ~ 23678038 (+)

Expression


Co-expression Network