LOC110523419 (LOC106568313)


Basic Information

Item Value
gene id LOC110523419
gene name LOC106568313
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21765705 ~ 21769900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051680.1
ATTGTTTGCGAACGCCACTATACAAGAAGAAGAAGATTATGACGAAGACTGGATTGGGCCATGTTACAGAGTGCGAATAGACTACATGACAGAGATCGACTGACATGAGATTCTCATATCTGCCATATTTAACTTCCAGAGCCTGCTGACAGTGATCCTATTGCTCATCTGTACCTGTGCCTATCTCAGAGCCATGGCGCCCAGTCTCCTGGACAAGAACAAGACCGGCCTCTTGGGTATCTTCTGGAAATGTGCTAGAATAGGTGAGAGGAAGAGTCCGTACGTGGCGGTTTGTTGTGTCGTCATGgccctctccatcctcttctccGACTAGCAACACACCCGGCCCCGCCACGCCCTGCACACTGGGATTCCTAGTGGCAGAATAAAGAAGACTGAGTCATTCAGGAGAAGCAGCAGCAGTATCTCCACTCTCACAGAGGAGGCCTGTATGGGACACAGCTGTGTTTCTCTTCGGTGGGGTGCCGCGGTTAATGTTCTGTAGTAACACATAGGGACCTACTCTAGAGAAGAACAAGCCTCCCCCatcactccctccatccttctgttGGCCATTTCACAGTTTAGCCTCAATCAGTTGTTAACCAACGGCCTCCTGGATCTCTCTGTAAACACTGACAGTTGTTGTCCTCTGATATTAACCGTAGGGATTGCCCCATGTTTTTCACTGCACTCTGATTTGTAATGAGGTCCATATGGTAGATGGACAGATTTTGGGGAggagtgttttgttttgtgttttgacTGTTTTTCTGTACATAAGACTCCATTGATTAGACTATTGGACAGTTGTGCCTTTCTGTAACCCAGGATTCAGTTTTTTCATTGATCACTGGGGTGGCTAAATTTCAGAAACATTAACCCTGTGTTCAACTTACTACTTTTCTGAATGAGAATTTATTTGAttagtgttaactagctaactGATTGATCCTGTTTGGTGAAACGTGACCCTGTGGTAGTGTTCCATgttgtctttttttttcttccatgtTGTCTTTTTTTTCTTGCAGTCGTGAGATCTGATGGTCTGTGCAGCGCGACAGGCCGTGAGGCTGATAggtaagcttattaaagatcagtgacactatcaagaacagtgtgcggtttcctttttcccTCATCTTGTCTAATTGTTACCATACACCTGCAAAaaaagattgctcagatgtgcgagtgccttttgactGAAATCAATAGGACCTGGAACATGCCCATTATGACAGCACTACAGCCAAACTGTCATTAAATCTGAAATAAAGACAACTGTTGTCGTCTCCTGA
>XM_036977047.1
TTTGCGAACGCCACTATACAAGAAGAAGAAGATTATGACGAAGACTGGATTGGGCCATGTTACAGAGTGCGAATAGACTACATGACAGAGATCGACTGACATGAGATTCTCATAGTCGTCTCTTGTTCCGTACACGTCATCTGTTTGCGACGCTACGGGAATTGTGAGGTGgcagctggctagttagcggACCTACCTCCGACATGTCTGCCATATTTAACTTCCAGAGCCTGCTGACAGTGATCCTATTGCTCATCTGTACCTGTGCCTATCTCAGAGCCATGGCGCCCAGTCTCCTGGACAAGAACAAGACCGGCCTCTTGGGTATCTTCTGGAAATGTGCTAGAATAGGTGAGAGGAAGAGTCCGTACGTGGCGGTTTGTTGTGTCGTCATGgccctctccatcctcttctccGACTAGCAACACACCCGGCCCCGCCACGCCCTGCACACTGGGATTCCTAGTGGCAGAATAAAGAAGACTGAGTCATTCAGGAGAAGCAGCAGCAGTATCTCCACTCTCACAGAGGAGGCCTGTATGGGACACAGCTGTGTTTCTCTTCGGTGGGGTGCCGCGGTTAATGTTCTGTAGTAACACATAGGGACCTACTCTAGAGAAGAACAAGCCTCCCCCatcactccctccatccttctgttGGCCATTTCACAGTTTAGCCTCAATCAGTTGTTAACCAACGGCCTCCTGGATCTCTCTGTAAACACTGACAGTTGTTGTCCTCTGATATTAACCGTAGGGATTGCCCCATGTTTTTCACTGCACTCTGATTTGTAATGAGGTCCATATGGTAGATGGACAGATTTTGGGGAggagtgttttgttttgtgttttgacTGTTTTTCTGTACATAAGACTCCATTGATTAGACTATTGGACAGTTGTGCCTTTCTGTAACCCAGGATTCAGTTTTTTCATTGATCACTGGGGTGGCTAAATTTCAGAAACATTAACCCTGTGTTCAACTTACTACTTTTCTGAATGAGAATTTATTTGAttagtgttaactagctaactGATTGATCCTGTTTGGTGAAACGTGACCCTGTGGTAGTGTTCCATgttgtctttttttttcttccatgtTGTCTTTTTTTTCTTGCAGTCGTGAGATCTGATGGTCTGTGCAGCGCGACAGGCCGTGAGGCTGATAggtaagcttattaaagatcagtgacactatcaagaacagtgtgcggtttcctttttcccTCATCTTGTCTAATTGTTACCATACACCTGCAAAaaaagattgctcagatgtgcgagtgccttttgactGAAATCAATAGGACCTGGAACATGCCCATTATGACAGCACTACAGCCAAACTGTCATTAAATCTGAAATAAAGACAACTGTTGTCGTCTCCTGA
>XM_036977046.1
CATGTTACAGAGTGCGAATAGACTACATGACAGAGATCGACTGACATGAGATTCTCATAGTAAGCAGCCTACTTAATTTGCAATCCTAACCGAATGCTAGTTCCATGTTGATATCTATAAATTGCTATATCTTTATTTCCATGCATCATGCTTGTTTGTAAACAAAGCTCAGGCAACGTAGCTTCTTGCACTGCACACGTGTGGCTAAATGCAAAACATGTCGCACGTACCTGAATGTCCGACCTACCTCAAACTGCACCAGCCTACGTTGTTAGATAGTTGGATGTGTCTTGTAATATCTGAGGGTCGACATTTAAACCCTACAACCGCTGCAAAATATATAGTTTAAATGGCAAAGCGCCGCGGTTTCAGGTCGTCTCTTGTTCCGTACACGTCATCTGTTTGCGACGCTACGGGAATTGTGAGGTGgcagctggctagttagcggACCTACCTCCGACATGTCTGCCATATTTAACTTCCAGAGCCTGCTGACAGTGATCCTATTGCTCATCTGTACCTGTGCCTATCTCAGAGCCATGGCGCCCAGTCTCCTGGACAAGAACAAGACCGGCCTCTTGGGTATCTTCTGGAAATGTGCTAGAATAGGTGAGAGGAAGAGTCCGTACGTGGCGGTTTGTTGTGTCGTCATGgccctctccatcctcttctccGACTAGCAACACACCCGGCCCCGCCACGCCCTGCACACTGGGATTCCTAGTGGCAGAATAAAGAAGACTGAGTCATTCAGGAGAAGCAGCAGCAGTATCTCCACTCTCACAGAGGAGGCCTGTATGGGACACAGCTGTGTTTCTCTTCGGTGGGGTGCCGCGGTTAATGTTCTGTAGTAACACATAGGGACCTACTCTAGAGAAGAACAAGCCTCCCCCatcactccctccatccttctgttGGCCATTTCACAGTTTAGCCTCAATCAGTTGTTAACCAACGGCCTCCTGGATCTCTCTGTAAACACTGACAGTTGTTGTCCTCTGATATTAACCGTAGGGATTGCCCCATGTTTTTCACTGCACTCTGATTTGTAATGAGGTCCATATGGTAGATGGACAGATTTTGGGGAggagtgttttgttttgtgttttgacTGTTTTTCTGTACATAAGACTCCATTGATTAGACTATTGGACAGTTGTGCCTTTCTGTAACCCAGGATTCAGTTTTTTCATTGATCACTGGGGTGGCTAAATTTCAGAAACATTAACCCTGTGTTCAACTTACTACTTTTCTGAATGAGAATTTATTTGAttagtgttaactagctaactGATTGATCCTGTTTGGTGAAACGTGACCCTGTGGTAGTGTTCCATgttgtctttttttttcttccatgtTGTCTTTTTTTTCTTGCAGTCGTGAGATCTGATGGTCTGTGCAGCGCGACAGGCCGTGAGGCTGATAggtaagcttattaaagatcagtgacactatcaagaacagtgtgcggtttcctttttcccTCATCTTGTCTAATTGTTACCATACACCTGCAAAaaaagattgctcagatgtgcgagtgccttttgactGAAATCAATAGGACCTGGAACATGCCCATTATGACAGCACTACAGCCAAACTGTCATTAAATCTGAAATAAAGACAACTGTTGTCGTCTCCTGA
>TU429235
CGAAGACTGGATTGGGCCATGTTACAGAGTGCGAATAGACTACATGACAGAGATCGACTGACATGAGATTCTCATATCTGCCATATTTAACTTCCAGAGCCTGCTGACAGTGATCCTATTGCTCATCTGTACCTGTGCCTATCTCAGAGCCATGGCGCCCAGTCTCCTGGACAAGAACAAGACCGGCCTCTTGGGTATCTTCTGGAAATGTGCTAGAATAGGTGAGAGGAAGAGTCCGTACGTGGCGGTTTGTTGTGTCGTCATGgccctctccatcctcttctccGACTAGCAACACACCCGGCCCCGCCACGCCCTGCACACTGGGATTCCTAGTGGCAGAATAAAGAAGACTGAGTCATTCAGGAGAAGCAGCAGCAGTATCTCCACTCTCACAGAGGAGGCCTGTATGGGACACAGCTGTGTTTCTCTTCGGTGGGGTGCCGCGGTTAATGTTCTGTAGTAACACATAGGGACCTACTCTAGAGAAGAACAAGCCTCCCCCatcactccctccatccttctgttGGCCATTTCACAGTTTAGCCTCAATCAGTTGTTAACCAACGGCCTCCTGGATCTCTCTGTAAACACTGACAGTTGTTGTCCTCTGATATTAACCGTAGGGATTGCCCCATGTTTTTCACTGCACTCTGATTTGTAATGAGGTCCATATGGTAGATGGACAGATTTTGGGGAggagtgttttgttttgtgttttgacTGTTTTTCTGTACATAAGACTCCATTGATTAGACTATTGGACAGTTGTGCCTTTCTGTAACCCAGGATTCAGTTTTTTCATTGATCACTGGGGTGGCTAAATTTCAGAAACATTAACCCTGTGTTCAACTTACTACTTTTCTGAATGAGAATTTATTTGAttagtgttaactagctaactGATTGATCCTGTTTGGTGAAACGTGACCCTGTGGTAGTGTTCCATgttgtctttttttttcttccatgtTGTCTTTTTTTTCTTGCAGTCGTGAGATCTGATGGTCTGTGCAGCGCGACAGGCCGTGAGGCTGATAggtaagcttattaaagatcagtgacactatcaagaacagtgtgcggtttcctttttcccTCATCTTGTCTAATTGTTACCATACACCTGCAAAaaaagattgctcagatgtgcgagtgccttttgactGAAATCAATAGGACCTGGAACATGCCCATTATGACAGCACTACAGCCAAACTGTCATTAAATCTGAAATAAAGA
>TU429234
TACGGGAATTGTGAGGTGgcagctggctagttagcggACCTACCTCCGACATGTCTGCCATATTTAACTTCCAGAGCCTGCTGACAGTGATCCTATTGCTCATCTGTACCTGTGCCTATCTCAGAGCCATGGCGCCCAGTCTCCTGGACAAGAACAAGACCGGCCTCTTGGGTATCTTCTGGAAATGTGCTAGAATAGGTGAGAGGAAGAGTCCGTACGTGGCGGTTTGTTGTGTCGTCATGgccctctccatcctcttctccGACTAGCAACACACCCGGCCCCGCCACGCCCTGCACACTGGGATTCCTAGTGGCAGAATAAAGAAGACTGAGTCATTCAGGAGAAGCAGCAGCAGTATCTCCACTCTCACAGAGGAGGCCTGTATGGGACACAGCTGTGTTTCTCTTCGGTGGGGTGCCGCGGTTAATGTTCTGTAGTAACACATAGGGACCTACTCTAGAGAAGAACAAGCCTCCCCCatcactccctccatccttctgttGGCCATTTCACAGTTTAGCCTCAATCAGTTGTTAACCAACGGCCTCCTGGATCTCTCTGTAAACACTGACAGTTGTTGTCCTCTGATATTAACCGTAGGGATTGCCCCATGTTTTTCACTGCACTCTGATTTGTAATGAGGTCCATATGGTAGATGGACAGATTTTGGGGAggagtgttttgttttgtgttttgacTGTTTTTCTGTACATAAGACTCCATTGATTAGACTATTGGACAGTTGTGCCTTTCTGTAACCCAGGATTCAGTTTTTTCATTGATCACTGGGGTGGCTAAATTTCAGAAACATTAACCCTGTGTTCAACTTACTACTTTTCTGAATGAGAATTTATTTGAttagtgttaactagctaactGATTGATCCTGTTTGGTGAAACGTGACCCTGTGGTAGTGTTCCATgttgtctttttttttcttccatgtTGTCTTTTTTTTCTTGCAGTCGTGAGATCTGATGGTCTGTGCAGCGCGACAGGCCGTGAGGCTGATAggtaagcttattaaagatcagtgacactatcaagaacagtgtgcggtttcctttttcccTCATCTTGTCTAATTGTTACCATACACCTGCAAAaaaagattgctcagatgtgcgagtgccttttgactGAAATCAATAGGACCTGGAACATGCCCATTATGACAGCACTACAGCCAAACTGTCATTAAATCTGAAATAAAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051680.1 False 1304 mRNA 0.45 4 21765705 21769900
XM_036977047.1 False 1392 mRNA 0.46 5 21765709 21769900
XM_036977046.1 False 1650 mRNA 0.45 4 21765764 21769900
TU429235 False 1242 lncRNA 0.45 4 21765747 21769880
TU429234 True 1219 lncRNA 0.46 4 21766175 21769880

Neighbor

gene id symbol gene type direction distance location
LOC110522823 NA coding upstream 70083 21689168 ~ 21695622 (+)
LOC110523415 LOC106568324 coding upstream 81437 21669421 ~ 21684268 (+)
LOC110523414 cetn3 coding upstream 129726 21633532 ~ 21635979 (+)
LOC110523413 LOC106568345 coding upstream 142767 21616200 ~ 21622938 (+)
LOC110523412 LOC106568387 coding upstream 156624 21602033 ~ 21609081 (+)
LOC110523420 LOC106568307 coding downstream 28440 21798340 ~ 21808924 (+)
LOC110523421 LOC106568255 coding downstream 46878 21816778 ~ 21822877 (+)
LOC110523423 LOC106568289 coding downstream 72168 21842068 ~ 21847237 (+)
LOC110523424 LOC106567937 coding downstream 184183 21954083 ~ 21958510 (+)
LOC110522824 LOC106563065 coding downstream 191575 21961475 ~ 21990926 (+)
G377535 NA non-coding upstream 149912 21615078 ~ 21615793 (+)
G377533 NA non-coding upstream 153324 21612119 ~ 21612381 (+)
G377527 NA non-coding upstream 174000 21589495 ~ 21591705 (+)
G377523 NA non-coding upstream 188121 21577204 ~ 21577584 (+)
G377520 NA non-coding upstream 193433 21571209 ~ 21572272 (+)
G377619 NA non-coding downstream 10488 21780388 ~ 21780616 (+)
G377628 NA non-coding downstream 20681 21790581 ~ 21790798 (+)
G377629 NA non-coding downstream 20978 21790878 ~ 21791428 (+)
G377630 NA non-coding downstream 21602 21791502 ~ 21791809 (+)
LOC110523400 LOC106568542 other upstream 606786 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 929146 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 1007204 20508074 ~ 20759255 (+)
G377022 NA other upstream 1168842 20591480 ~ 20596863 (+)
G376320 NA other upstream 1781857 19983261 ~ 19983848 (+)
G378660 NA other downstream 402635 22172535 ~ 22231920 (+)
G378832 NA other downstream 733852 22503752 ~ 22506270 (+)
G378868 NA other downstream 832210 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 1172392 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 1854064 23623921 ~ 23678038 (+)

Expression


Co-expression Network