LOC110523420 (LOC106568307)


Basic Information

Item Value
gene id LOC110523420
gene name LOC106568307
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21798340 ~ 21808924 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977048.1
GTTTTCCATCTCCCTTGCCAGACCCCCCAAAGTCGGAGCGTGTCATCAAATTGAGTGAGAACTATGATTGAAACTCATTGCCACAGTGTGTAACGGTGTGTGTTTACGTCATAGGGCTTAGAGCCGCAGATAAGATTTACCACAGATAAGATTTACagacggagagagggaaggagggagggacagagtggTGTTACAATGCCATCTCGCTCACTTGCTCTCACTCAGGGACTCAGATAGGCTGGTATACTGATTTTCTCTGCACTTACTCAGAGAAGCAACAGGGTCATGATGACCCAAAGCCTCCAGAATGGCTTCACTCTGGACAACCACTACCTCCGGGATCTGAAGGGGCCTGTCCCTGTGCCCACTCAATATGCTCCGAGCCTGGGTGTACACCGGGGGTCATGCCCTGTGGAGCCCCATAAGGACCAAGAGATCAAGAAGCATCGGTCTGCTCAGGCTGCTCCTCTCCTGGGCTCATGTCGTGTGCAAACCCCTGCTCCTATGGATGTCCAGATGTGCCAGTCTATACAGCCATGCCATGCAGATCACCAAGGAGACCTGAGTGCTGGGCAGCTACTCAAATGGATGGACACAATCGCCTGCCTCGCTGCTGAGCGTCATGCTGGGATGGCATGTGTCACACTATCCATGGACGACATCCAGTTTGAGGAGACTGGAAGGGTTGGTCAGGTGATGACCATTAAGTCCAAAGTCAACAGAGCGTTCACCACTAGCATGGAGgttggaATCCGTGTGTCAGTGCAGGATGTGAGGGAACATGTGGAGAGGTTGGTATGTGTGGCCTACTCCACCTTTGTTGGAAAGCCAGCGGGACCACAGAAGGTGTTGTTGCGGCCGGTGGAGGATCTGTGTTCTGCAGAGGAGCAGCTGCAGCATTCTCTGGCCTCAGAGAGACGAAGACTTCGCCTTTACAATGAACAGACCTTCAGTACCTTGCTACAAGACTACCACACACTAGCCAACGGTAACTATTCCTCTCCGGGTGTGTGTAGCAGGAGAGACCCGCTGTCTGCTGTGTCCACAGAGTTCACGCGTGTAGAGAGCATCGAGCTGGTACTGCCTCCACATGCTAATCACCATGGCAACACCTTCGGAGGACAGATCATGGCCTGGATGGAGAATGCAGCCACAGTGGCAgccagtcgtCTGTGTGGCTGCTTCCCCTCTCTGAGGTCTGTAGACATGTTTCGCTTCAGAGGGCCCTCCTCTGTAGGTGACAGACTGGTCTTTAAGGCTGTGGTCAACAACACATTTAACAACAGTATCGAGGTAGGTGTCCGAGTGGAGGCCTATAACTGTGAGGAGTGGACCGCGAACAAACCACGTCACATCAACAGTGCCTTCCTCATCTACCAGCTAGCTAACACACCTGGTGACGTACCTGCCTTCCCCCAAGTCACATACACCACCCAGGACGGGGAGAGAAGATATCTGTCTGCCATTGTCAGGAAGAGAATACGCATGGCTAGAAAGCACATCCTATCCTGTAAGGAggaggctcctctctctgtcccctgggaCAAAAGCAACCAGGTGTATCTGGGCTATAACAATGTAGCAGCTCTAACTGTACTGGCTGGGAAACAAGACTGGGAAGCCAGCAGCATCAGTGACAGAGTCGCTGTGTATGTCCATGAGGAGGTGGAGCTGCTTTGTGTCCAAGTTCAGATGGAGGTCATGACCTCTGCCCTCCATGCCTTCACCTTACTGGCTGACCTCACGCTGCGACCTCTTTGGGACAACCACTACCTGAGCtgtgaggaggtggagagggcggATGAGGAAGAGACAGTATATCATATTAAATGCCCACCCATCAATGGAGGCAAGAGCCGTGACTTTGTGTTCCTGCTATCAAAGAGGCAGCCCTGCAAAGACGGTGACCCCTATGTGGTGGCCCTGAGGTCGGTAACTGTGACAACAGTTCCCCCTGTGGAGGGTTTCCTCCGTAGCGAGGCCAAGTGTGCCGGTTTCCTCATCCACAGCCTGGGACTCAACAGCTGCAAGGTGTGTTACTACAACCAGGTGACGTCAGGTGTTTTGCCGTATGTAGCAGGTAACCTGGCAGGCTGGTCCAAGTCTATGGAGGAGACGGCTAGCGCATGTACCACCTTCCTGGAGAGAGACCTCATCACTACCCTCTACTGACTCACACACTAAGCATGAGTCTATGATGGTGAACTGACACAGCAGCACAGATTCTAACAATACAGAACTGTCCGTGGCTGCTAATACAGGTGTTACATTTACAGTTACCCAAAAAAGTATTTGTGACGTTTCTGTAACAATTCAGAGCAAATTTAGCTCATGTatgtggtgtaggtcttatttaatTAATTTTTCTATAAATATTTCAGATGTTGATGCGAGTAATGTACAGTGACATAATGATACTCAtaatgacaaaacctattctgtaaataacaaataaaagCTAAATGTTTTA

Function

NR:

description
PREDICTED: acyl-coenzyme A thioesterase 12-like

GO: NA

KEGG:

id description
K01067 E3.1.2.1, ACH1; acetyl-CoA hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977048.1 True 2473 mRNA 0.51 12 21798340 21808924

Neighbor

gene id symbol gene type direction distance location
LOC110523419 LOC106568313 coding upstream 28440 21765705 ~ 21769900 (+)
LOC110522823 NA coding upstream 102718 21689168 ~ 21695622 (+)
LOC110523415 LOC106568324 coding upstream 114072 21669421 ~ 21684268 (+)
LOC110523414 cetn3 coding upstream 162361 21633532 ~ 21635979 (+)
LOC110523413 LOC106568345 coding upstream 175402 21616200 ~ 21622938 (+)
LOC110523421 LOC106568255 coding downstream 7854 21816778 ~ 21822877 (+)
LOC110523423 LOC106568289 coding downstream 33144 21842068 ~ 21847237 (+)
LOC110523424 LOC106567937 coding downstream 145159 21954083 ~ 21958510 (+)
LOC110522824 LOC106563065 coding downstream 152551 21961475 ~ 21990926 (+)
LOC100135946 LOC100135946 coding downstream 188732 21997656 ~ 22000508 (+)
G377630 NA non-coding upstream 6531 21791502 ~ 21791809 (+)
G377629 NA non-coding upstream 6912 21790878 ~ 21791428 (+)
G377628 NA non-coding upstream 7542 21790581 ~ 21790798 (+)
G377619 NA non-coding upstream 17724 21780388 ~ 21780616 (+)
G377650 NA non-coding downstream 25793 21834717 ~ 21835040 (+)
G377658 NA non-coding downstream 40575 21849499 ~ 21850193 (+)
G377656 NA non-coding downstream 45259 21854183 ~ 21854828 (+)
G378403 NA non-coding downstream 51670 21860594 ~ 21865869 (+)
LOC110523400 LOC106568542 other upstream 639421 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 961781 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 1039839 20508074 ~ 20759255 (+)
G377022 NA other upstream 1201477 20591480 ~ 20596863 (+)
G376320 NA other upstream 1814492 19983261 ~ 19983848 (+)
G378660 NA other downstream 363611 22172535 ~ 22231920 (+)
G378832 NA other downstream 694828 22503752 ~ 22506270 (+)
G378868 NA other downstream 793186 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 1133368 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 1815040 23623921 ~ 23678038 (+)

Expression


Co-expression Network