LOC110523423 (LOC106568289)


Basic Information

Item Value
gene id LOC110523423
gene name LOC106568289
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21842068 ~ 21847237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602099.2
GGGTCCGCTGCGTGATGTCACTCCCGGGGCTGAGAGCGAGGCGCGGTTATTTATCCTACCCGGGCAGTTAACGGGGCTCAGTCGTAAGGGACGCCGAGCTAGTGGGTCTTTGTCAAAGGAAATGTAACCTGCTAGTATCGCTACAAAACAGAACAAGATCTTAACAACAATCGGGATGTGCAACAGACGGCCATTATTCAACCACTATTGAAGGGAAAGGACGTTATTATCCGTGAGTCATGGAGAGAAAGTGGACCTAGTCGAGTTGCGCACAATCAAAAACTGGGAAAAAGGAGGAATAAATCAGTATCATGGTGATAATAATTATAACATTATCACCATGTAATCAGTGAAGTGTTGACATTACCCTTTTTAGTTTAACGACTTTGACAGCACTCAAACGAACTATAAAGCATCTATCCTATCAAACACCACGAAAGAAAAATGAAGGaatatgttatttttttattctacAATTGAATGAACTATTTTGATGTTTGTGGCTGAAGTCTTCTCGGACCTGTCTGTTGACGATGACAGCTCAGTGCGGGTCTCGTTTCGCCACTTTTGGACAGATGGAAGCTGAGGAACGCAGATTGTTGGATTACTTTTTACGTCTTTAAACTGAAGTCGCCGCTAATGCGTTATATGGTTACTCTACGAATATGAATAGCAACTTTTTAAAAGGCATTTTATCCGCTCAAGTATCATCCCGTGCGTCTCTGGGCCATGGCTGACATCATTACGCGGGTGGGATTCGGGGTGTTCCGATTTCATggtataattattaatgttttaCTTCAGTGAATTTCATTTACATCGAGCACGGTCTATGGATTGCCTGAATGACTATTACAGTTCGAAGGACTATGTTTGAATGACACATTTTTTCAGCATTTGTTGAAGCAATTAATAATTTCCCCCAGAAGAATAACTATCCAAGCatcagcggtgtgtgtgtgagttaaaaTATATTTAGTAATTTAATTGAATGATTGGATAAGattattctttatttttctttcatTAAATATCCAATAACCATTTCGTGGATCTTAACCCATCTGAGTGTTGAAAAGAGACATGAAAAGAGAGTGCGTGACTGGAGGAGTAAAATTATCTGTTTTACACTGGACAACTTGTCTGTGTATTTGACAAAGCAGCACaagctttttctctttctctgatTTTAATTCAATCATCTCGTGCGTAAAGTTCTAAGGGGGATGCCTCTTGAGCCCATCAGCCATGTCTCTGTTTCTGCGTTAGAGCCCTCCTCTTTACTGCCCTCTCACTGGACAACGAGTCTTCCTCAAGGGATTAAGGTAGCAGATAACAGAAAcctatatatacatttttttcaccTTCACTCACTCCAAACATACTTCATGTTCCCCGTGAGTTTCTGAATTTTCTCCAATATATGTGCTCCTGCTGGCGTCGCCATGGCTGCGGCCCCAAAAGTTACATGCCTGTCAGCGCCAGGGGTAAATGTGATTACCAACCTGAACCTCAGTGTCACCACCGGATCTGCCCCCTACTACAACCAGACAGCACTGCGAATCCCACCCTATTCCCCAGAGGCCACTGCGTTATTCGCAATGGCGATCACCCTCATGATGATCCTCACCATCGTCGGCAACATCTTGGTCATCATTGCAGTGCTGACCTCACGCTCACTCCATGGCCCACAGAACCTTTTCCTTGTCTCCCTGGCTGCAGCCGACATCCTAGTCGCTACCCTCATCATCCCCTTCTCACTGGCCAATGAGCTGCAGGGTTACTGGGCGTTCCGCTCACTGTGGTGTGAGATCTACCTGGCGTTGGACGTCTTCTTCTGCACGTCCTCCATTGCCCACCTGTGTGCCATCTCATTGGACCGCTACCTGTCCATCTCCCGGCCCGTGTCCTATGGCATCCAACGGACGCCAGCGCGCATCAAGGCGGCCATCGTGGTCGTCTGGCTTCTCTCGGCCgtcatctccttccctcctctcctctccctggataAGAGCaagggaggggtggaggtgtgtgagCTGAACAACGAGCGTTGGTATATTCTCTACTCCACCATTGGATCGTTCTTCGCCCCGTGTCTCATCATGATCGGGGTCTACATCAGGATCTACCAGATTGCCAAGCAACACACAAGATGTCTGCCAGGGGAGAAACCCAACCCTAACAAATCCCCTGGCAACATGTCTAGCAACCCTCCTACCAACCCCACACCTCCCTCACCGGGACCTGTCATCATCCCCCAACTCAAGCCTCTCAGCCAACCACAGAACCACaaaggggaaggagggaaagCAGACAGACAATCTACGGACGCCGTACCTCTGAAgagtctccctgtctcctccccctcatctcctcctccccagaGTGAGACCCAGGCCAAGAGTCAACCCCAGACGTCTTTACCAAATCCTGTCCCCACCTCACCCCAGCCTACCTCACCCACCGTAGCTCTCTCCCTTACACTCCTCTCTCCAGATAGCCAACATGAGGAGACCCACAGACAGGGTGAGATACAGGAGGAGAAACATAGAGACACCCCCAATGATGACAGCTTCAGCTCTGGCTCCGAGGCAGAGACGAGGggaagaggaaagggagggagagggggagggaaagggacAGTTAAGAATAATGGAGGATCAAAGTCTGGAGGagcacctctctcttctctgaccTCTCACGAGGCCAAAAATACTGTAGCCACCCCCACCGGTACAGTGCTGGTCTCTGATAGGCCGGTGAAGCCACAGGCCACTCCCATGTCTCGGCGCAGGGCCATGGTAAATCGAGAGAAGCGCTTCACGTTTGTCCTGGCCGTGGTGATCGGAGTGTTTGTCATCTGTTGgttccctttcttcttctcctacTCACTGAAGGCCATCTTTCCTGAGACCTGCTTGGTCCCTGCTCCCCTCTTCACTTTCTTCTTCTGGATCGGCTACTGCAACTCCTGTCTGAATCCCGTCATATACACCATCTTCAACCAGGACTTCAGGAAGGCCTTCAAGAAGATCCTCTGTAGGGACACCAAGGGGACGTTCTTCTAGTGTGGACACTATGTAAGGACATCAAGTGGATGTTTATGTAGAGTGGATactgtgtaaggacatcaagTGGATGTTCTTGTAGAGTGGATACAGATGGTACATGATTCTCTACATTGCTTGTTTTGCCACtgaaactgaaattaggcaaactatcgaatcttagcaaccaggaaatggtcgagcaatttctgcatattgcacctttaagacATTGTCAGCTATACtctggtcattatttgaactggctagccagctagcaATGaatcaaaacattgtttagaaaatTGCTTTTAATTACCTTGCTTGCTAGCTTGACATTTACtgaattcatttttaaactgAGGGGTTTATTGGTGATAAAATAGAGAAGGTATGCTATATGGTGCATCGGGCTGCTGATTTTCTTTTTCATAACAACAACCGACAAGTTTGATGTTGGGCGACAATAGAATGCTCATGCTGTCGCTACAACAATTTTCTACAGACATGTCAATAGACTGACCGTAAACCACCTTCAGCCTACATTTGAAAATTACATCATGGCATTTAATTGAAGTATACTCGATTTTCGAAATGTTGCAATCTATTAAACGTTCTTTTATTTCTAGAGTAGATACTGTGTAGAGACACCAAGGGGACGTTCTTCTAGAGTAGATACTGTGTAGAGACACCAAAGGGACGTTCTTCTAGAGTAGATACTGTGTAGAGACACCAAAGGGACGTTCTTCTAGAGTAGATACTGTGTAGAGACACCAAAGGGACGTTCTTCTAGAGTAGATACTGTGTAGAGACACCAAAGGGACGTTCTTCTAGAGTAGATACTGTGTAGAGACACCAAAGGGACGTTCTTCTAGAGTAGATACTGTGTAGAGACACCAAGGGGACGATCTTCTAGAGTAGATACTGTGTAGAGACACCAAGGGGACGATCTTCTAGAGTAGATACTGTGTAGAGACACCAAGGGGACTTACTGGATGTAATGTAAAGACAGATTTTAGTTTAACCGTGCAGGGAACCACAGACAAACTTTTGAGTCTGTCCTTTGTTGAACATTGTGTTCGATCTGATAAGAAAAATGCTGAACTTTGGAATTCTGGAATAGATGAACGTGCTCTGATGTACACATTGAGGGGcagtggaagaggaggaaggtgaTGCAATCTGTCTGAGAAAAAGCAAACACCTTTACAGCTTGTTTAGCGATTGGCACAAAACAGGGCCATCAGTCATGAGGACATGTTGCTCAAATGACAGTATCACACTGCTCTTGTTGTTCTTCTGTAATTGGCTCTggttaagagcgtctgctaaatgactaaaatgtaaatgtagaagGAAAGGAAGGTTATACTCTGTTGATTCCATTGGCTGGCAGGGTAACTGCTACCCATAGCCATTACCTGTAGCCTTGTGACTGGCCACTATGAACTACAAGGACAGAGTGTGTCCATGATCACCTGGTACGGTCCACTGCAATGACACAAAATGGGCAGGAGCATGTGCAGTAGAATGTGTTCCCAGAGTTCTCTGTGTTCTAGAACTTGTAGTGTGTGAAGGCAGTTTGTCCAGCTGTCCAGCCTCTGTCATAAACTCATACACTACGGAGGATGTCTTTTAAAGGAACCAACCAGCTCTGAGGGTGTGTTGTTTTGAGTATCTGAAATTAACATATGTTATTATATAAGTATGAAATTAATATAAACACATGAAAAGTTAAATATGGAATGGGTTGTTGATGTGACCAAGGCCTCAGTAATGTAATTCATTGgggaatataggggaaacactggtgtgtgtgttgtgtagtggcctAAGGGTTTTACTGGAACAGCGTAAATCactcatgttttttttatatatatgagGTAAAGAACTcacaagacctctctctctctctgtctctctgtctctctgtctctgtgtgtgtgtgtgtgtgtgtgtgcatgcaaggTTTACAGAGTGCATGCCTATGAATACACATTCTCCAATTCTGTGTGAACCAATGGATCcataatcatttatttatttagactGGTGTAATGTAAAAACATTGAATACATTCTAAATCTAaagtgtacactgagtgtacaaaacattag

Function

NR:

description
alpha-2B adrenergic receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602099.2 True 5170 mRNA 0.45 1 21842068 21847237

Neighbor

gene id symbol gene type direction distance location
LOC110523421 LOC106568255 coding upstream 19191 21816778 ~ 21822877 (+)
LOC110523420 LOC106568307 coding upstream 33144 21798340 ~ 21808924 (+)
LOC110523419 LOC106568313 coding upstream 72168 21765705 ~ 21769900 (+)
LOC110522823 NA coding upstream 146446 21689168 ~ 21695622 (+)
LOC110523415 LOC106568324 coding upstream 157800 21669421 ~ 21684268 (+)
LOC110523424 LOC106567937 coding downstream 106846 21954083 ~ 21958510 (+)
LOC110522824 LOC106563065 coding downstream 114238 21961475 ~ 21990926 (+)
LOC100135946 LOC100135946 coding downstream 150419 21997656 ~ 22000508 (+)
LOC110523429 acty coding downstream 198734 22045971 ~ 22053104 (+)
LOC110523432 LOC106567996 coding downstream 343131 22190368 ~ 22221369 (+)
G377650 NA non-coding upstream 7028 21834717 ~ 21835040 (+)
G377630 NA non-coding upstream 50259 21791502 ~ 21791809 (+)
G377629 NA non-coding upstream 50640 21790878 ~ 21791428 (+)
G377628 NA non-coding upstream 51270 21790581 ~ 21790798 (+)
G377658 NA non-coding downstream 2262 21849499 ~ 21850193 (+)
G377656 NA non-coding downstream 6946 21854183 ~ 21854828 (+)
G378403 NA non-coding downstream 13357 21860594 ~ 21865869 (+)
G378406 NA non-coding downstream 18751 21865988 ~ 21866406 (+)
G378410 NA non-coding downstream 19825 21867062 ~ 21867445 (+)
LOC110523400 LOC106568542 other upstream 683149 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1005509 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 1083567 20508074 ~ 20759255 (+)
G377022 NA other upstream 1245205 20591480 ~ 20596863 (+)
G376320 NA other upstream 1858220 19983261 ~ 19983848 (+)
G378660 NA other downstream 325298 22172535 ~ 22231920 (+)
G378832 NA other downstream 656515 22503752 ~ 22506270 (+)
G378868 NA other downstream 754873 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 1095055 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 1776727 23623921 ~ 23678038 (+)

Expression


Co-expression Network