LOC110523424 (LOC106567937)


Basic Information

Item Value
gene id LOC110523424
gene name LOC106567937
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21954083 ~ 21958510 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602100.2
GCGTTCATTGGTGTTGACCTGGAGACACGTCAGTCCCTCGTGACTCTGCCAGCAATAGCGTAACAAAAGGCGGATGTTCTTAGCAAGCTAGCTGACCTGGGACAAGGTTTAATGAAGCTGGTTAACGATAGCTAGGTGGTCAAGATTTTCACGTTTCAAAAAATAGACATAGATCCCGGCAAACTGACATAAGGACAACATTTTTGATTTTGTCCCTGCGCCGTATTATCGCCGTTTGATTGTTGAACAGCATAATTACGTTAGTCCCAGGGAAGGATGGCCTCCCGTAAGAAGGTGCTGCTGAAGGTGATCATCCTCGGAGACTCTGGGGTAGGGAAGACATCTCTGATGAACCAGTATGTAAATAAGAGGTTCAGTAACCAATACAAGGCCACTATAGGAGCTGACTTCCTCACCAAGGAGGTGATGGTGGATGACAGGCTGGTCACCATGCAGATCTGGGACACGGCAGGGCAGGAGCGGTTTCAATCTCTGGGTGTGGCGTTCTACCGTGGGGCTGACTGCTGTGTGCTGGTCTATGATGTCACGGCGCCCAACACCTTTAAGACTCTGGACAGTTGGAGGGATGAGTTCCTGATCCAGGCCAGCCCCAGAGACCCAGATAACTTCCCCTTTGTGGTGCTAGGCAACAAGATTGACCTCGAGAACAGACAGGTGACAACAAAGCGTGCCCAGGCCTGGTGTGCCAGTAAGAACAACATCCCCTACTTTGAGACCAGTGCCAAGGAGGCCATCAACGTAGACCAAGCATTCCAGACCATCGCCCGCAACGCcctcaaacaggagtctgaggTAGAGACGTATGACTTTCCAGACCAGATCAAACTGAGAGACGACCGGTCCTCCTCCTCCAGCGACGGCTGCTCCTGCTGAGACCAACGTTGGACGGACgttggatggaggagaggacatgggTGCATCGCAATAGTGCTCCTTGTCTCCTTTTCGTCCTCTGCACTGGTGTGAAAGATTGGGACAGGTGAAGCCATCTCCCCACATCCTTCCTGTGTTTTCACATCggtgcagatgaaggggaggaagccactttagactattgagatgcaccccatgAAGAGAGGCGGGGACCCCCCGTCTCTGCCCTCCCTTCCTCAGTCAGCTACTGAAGATTCCAGATGAAaagaaagaaaacacatttttcttAACTCACTGTCTCCCGTGGTGACctgacaggaaggagaggagaatccCCCATTTGCACAGCATCACTTTTTAATAAGATAGAAGAACCGGTGATACTATGGAAAATACAATCATGATGCTCCTATTATAATCATTTCTAATAATGTTGTCATGTCTTTTAGTTCTTGTCGTTTTAATTGTTTCATCCTTTTATACTGAGGTATAGactatttgtctgtttgtttgtggTCAAAGTAGAAGTTGTCATTAactactgatctaggatcagattactcttggccaaacctaaccttaaccattagagggATTGGTTAGGAGCAACTCTTACTTACTCTTCTCGCTCTGTGCCTTTCATCTCATGACAAGTATTACTGCAGCAGATCTGTCATATTaatctatatatacagtatatgtggtgTTTTTCTGCCTTTCAGCAGTCCTTATTTTGCCAAACTGTCAACCCCTAGACCCTTAGAAAAATGTAAATTTGAATCTGTTGTATTTGATAAGTGTCTGTTTTTAAACAGTTGTGTAGAGGGTGCTAAACTAACCAGATGCAGTGAAGGTAACTGTGTGCAGTCAAAATATGACGGTGTGCACTGACATTCTCTCGACCCAACAGCAACATCGGTTCTGTTCTTTTATACTGGTTAGTTCAGTACATTTCTTATCTTGTTATCCATACTACACAACTGTATCCCTGTAGAGGCTGGTCATACATTTTATGGAATGAAGACATGAGATGAGCAGTCACTATGGGCCTGTCTCAAGTTTAAACCCTAGCCCCCTCAAGGCTCCTAATAGATCAAAAATGATCTGATTTGTGTAAGCAGTGTGGTTCTAGTGAAATAGTAGTTGGCCATATTGCTTACACTACTTCTCAGGTCTACCAGGAGGCTATCTAGAAGTGTCTAGGGAAAGAGGGGAGGGTTTGGGACTGGACCCCATGTCCTCTGCCCTAACAGTGGGCCGTGCCCCTCTTTGGTCCTACTGATCACCTCTCTCCTAGTTTTTTTTCTATTCCATTGTCTTAAATCTGCCTTCCTATTCTACACCATCCACTAGTGTTGCTGTGTGTTCTAGTAACAGAAATGAATTGACTCTTTCATGCCAACAACCAATGAGCAAAAATCCTTAGTCATCTATCTACGTGAACATTTTCGCACAACTCCTTCAACTGTCATATTTTGTTGCATATCTCTTCGCTGTAAAACATAAATATTTACTTTATGGAAA

Function

NR:

description
ras-related protein rab7-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07897 RAB7A; Ras-related protein Rab-7A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602100.2 True 2418 mRNA 0.45 6 21954083 21958510

Neighbor

gene id symbol gene type direction distance location
LOC110523423 LOC106568289 coding upstream 106846 21842068 ~ 21847237 (+)
LOC110523421 LOC106568255 coding upstream 131206 21816778 ~ 21822877 (+)
LOC110523420 LOC106568307 coding upstream 145159 21798340 ~ 21808924 (+)
LOC110523419 LOC106568313 coding upstream 184183 21765705 ~ 21769900 (+)
LOC110522823 NA coding upstream 258461 21689168 ~ 21695622 (+)
LOC110522824 LOC106563065 coding downstream 2965 21961475 ~ 21990926 (+)
LOC100135946 LOC100135946 coding downstream 39146 21997656 ~ 22000508 (+)
LOC110523429 acty coding downstream 87461 22045971 ~ 22053104 (+)
LOC110523432 LOC106567996 coding downstream 231858 22190368 ~ 22221369 (+)
LOC110523445 LOC106568100 coding downstream 810155 22768665 ~ 22799421 (+)
G378478 NA non-coding upstream 1082 21952735 ~ 21953001 (+)
G378476 NA non-coding upstream 4747 21949085 ~ 21949336 (+)
G378474 NA non-coding upstream 6456 21947416 ~ 21947627 (+)
G378473 NA non-coding upstream 7676 21946068 ~ 21946407 (+)
G378472 NA non-coding upstream 8115 21945713 ~ 21945968 (+)
G378485 NA non-coding downstream 14078 21972588 ~ 21974098 (+)
G378489 NA non-coding downstream 22421 21980931 ~ 21981344 (+)
G378486 NA non-coding downstream 24002 21982512 ~ 22005024 (+)
G378512 kctd9 non-coding downstream 75330 22033840 ~ 22036950 (+)
G378513 NA non-coding downstream 78873 22037383 ~ 22037854 (+)
LOC110523400 LOC106568542 other upstream 795164 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1117524 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 1195582 20508074 ~ 20759255 (+)
G377022 NA other upstream 1357220 20591480 ~ 20596863 (+)
G376320 NA other upstream 1970235 19983261 ~ 19983848 (+)
G378660 NA other downstream 214025 22172535 ~ 22231920 (+)
G378832 NA other downstream 545242 22503752 ~ 22506270 (+)
G378868 NA other downstream 643600 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 983782 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 1665454 23623921 ~ 23678038 (+)

Expression


Co-expression Network