LOC110522824 (LOC106563065)


Basic Information

Item Value
gene id LOC110522824
gene name LOC106563065
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21961475 ~ 21990926 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110522824
ATGGGTACTCTGAGGGACCTGCAATTTGCGCTGCAGCTGAAGATCGAGGAGCTCCGTCAGAGAGACACTCTGATAGATGAGCTGGAGTTGGAGCTGGACACTAAAGATGACCTCGTCAGACAGCTGCAGACTGAATTGGACCGACACAGCAAAGCTCCACAATACCCAGGGACCACTGGGAGCACTGAGAACACAGcctcgagtcttcctggctCGCCGCGGACTAAGAGACAGGCAATATCAGCAGAACCCACTGCCCTGGACCCCGCCGAACTCACACACGTCACACTCACCAACTACAGCAAGAGCGAGAaGTCTAGAGAGCTGATCCAGAGGGCTCTGCTGGAGAATGACTTAATGAAACacctggagcagggacaggtTCAGACCATAGTGGACTGTATGCATCCCACCCGTCTGGCACAGGGCTGCTGTGTCATACAGGAGGGAAACAATGGATACAGATCcattgtctatgtACTGGAGGaggGTAAGGTGGAGGTTACTAAAGGGGGACAGGAGCTGTGCATCATGGATCCTGGGAAGGTCTTTGGAGAACTGGCCATCCTCTACAACTGTTCCAGGACCGCTACTGTTACAgCTCTGACGGACATTAAGCTGTGGGTGATAGACAGACAGGGTTTCCAGACCATCATGATGAGGACTGGACTCATCAAACACTTCCAGTATATGGAGTTCATCCGCagtgtTCCCTCCTTTCAGTCGTTGCCTGAGGACATTCTTAGTAAGGTGGCTGATGTTCTGGAGGAGaCTCACTACAGTGAAGGTGATTACATCATCAGACAGGGCACCACAGGAGACACATTCTTCATCATCAGCGAACAACagGTAAAGGTCACGCAGCAGAAATCAATCAATGAGGAGCTAGAGTTTCTAACAACTCTCACTAAGGGGGACTGGTTTGGAGAGCAGGCGCTGAAAGGGGAAGATGTTCGTACGACCAGTGTCACGGCAGTAGGAGAAGTCACCTGTCTGGTCgttgacagagaGTCATTCATGCATCTGATTGGAGGGCTGGATGATGTCAACAGCAGACAGAATGAGAATGATGAGCTCAACACCAAGTTGGAGGCAGAGGCAGGGTTTTTCTCCAGTGTGTCTCTCACTGATTTCCACGTCATCTGCACCCTCGGGCTAGGAGGCTTCAGTCGCGTCCAGCTgGTTCAGTTAAAGAGTGACACCAGTCGGTCCTTTGCTCTGAAGGTTCTAAAGAAGCGTCACATTCTGGACACTAGCCAACAGGGCCACATCCTCTCAGAGAGACGCATCATGATGGGTGCACACCGCCCCTTCACCCATCTGGATTCTTCCAGGGGTTTATTTGATGATGGCACAACAAGATTTTATACAGGCTGTATTGTAGAGGCCTTGTCCTTCCTCCATGTTAGAGGGATCATCTACAGAGACCTCAAACCTGAAAACATCCTACTGGACCACAGAGGATATGCTAAActgGTCGACTTTGGCTTTGCTAAGAAGGTTGGTCTTGGTCAAAAGACGTGGACATTCTGTGGCACTCCAGAGTACCTGGCCAAGGGAAATCATTCTGAACAAGGGACATGATGTTTCGGTTGACTGCTGGTCCCTGGGGATACTCATCTACGAACTGCTCAGCGGCAGtccTCCGTTCTCTGGTTCTGATCCTATGAAGACCTATAACATCATCCTGAGAGGAATCGACATGGTGGAGTTCCCCAAGAAGATTTCCAAGAGTGCTGCCAACCTCATCAAACTCCTCTACAGGGACAACCCATCTGAGAGGGTGGGGAACCAGAAGAACGGGGTGAAGGACATCCAAAAACACAAGTGGTTTGAAGGTTTTAACTGGGAGGGACTCCGACAGGCAACTCTGGCCCCTCCCTTCACTCCTactGTGAAGGGTCCACTGGACACTGGCAACTTTGACTGTTTCCCTGATGACAATGAGGACCCGCCCCCAGATGAGGAGTCTGGCTGGGATCTAGAGTTCTGACTTAAAAacacacactgagtataccaaacattaggaacattagaatg

Function

NR:

description
PREDICTED: cGMP-dependent protein kinase 1-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004692 cGMP-dependent protein kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110522824 True 2040 mRNA 0.51 21 21961475 21990926

Neighbor

gene id symbol gene type direction distance location
LOC110523424 LOC106567937 coding upstream 2965 21954083 ~ 21958510 (+)
LOC110523423 LOC106568289 coding upstream 114238 21842068 ~ 21847237 (+)
LOC110523421 LOC106568255 coding upstream 138598 21816778 ~ 21822877 (+)
LOC110523420 LOC106568307 coding upstream 152551 21798340 ~ 21808924 (+)
LOC110523419 LOC106568313 coding upstream 191575 21765705 ~ 21769900 (+)
LOC100135946 LOC100135946 coding downstream 6730 21997656 ~ 22000508 (+)
LOC110523429 acty coding downstream 55045 22045971 ~ 22053104 (+)
LOC110523432 LOC106567996 coding downstream 199442 22190368 ~ 22221369 (+)
LOC110523445 LOC106568100 coding downstream 777739 22768665 ~ 22799421 (+)
dmgdh dmgdh coding downstream 883244 22874170 ~ 22903435 (+)
G378478 NA non-coding upstream 8474 21952735 ~ 21953001 (+)
G378476 NA non-coding upstream 12139 21949085 ~ 21949336 (+)
G378474 NA non-coding upstream 13848 21947416 ~ 21947627 (+)
G378473 NA non-coding upstream 15068 21946068 ~ 21946407 (+)
G378472 NA non-coding upstream 15507 21945713 ~ 21945968 (+)
G378512 kctd9 non-coding downstream 42914 22033840 ~ 22036950 (+)
G378513 NA non-coding downstream 46457 22037383 ~ 22037854 (+)
G378570 NA non-coding downstream 48068 22038994 ~ 22039248 (+)
G378571 NA non-coding downstream 48423 22039349 ~ 22039566 (+)
G378573 NA non-coding downstream 49465 22040391 ~ 22040640 (+)
LOC110523400 LOC106568542 other upstream 802556 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1124916 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 1202974 20508074 ~ 20759255 (+)
G377022 NA other upstream 1364612 20591480 ~ 20596863 (+)
G376320 NA other upstream 1977627 19983261 ~ 19983848 (+)
G378660 NA other downstream 181609 22172535 ~ 22231920 (+)
G378832 NA other downstream 512826 22503752 ~ 22506270 (+)
G378868 NA other downstream 611184 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 951366 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 1633038 23623921 ~ 23678038 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000158_00996425_01012543 NA coding CI01000158 null 996322 ~ 1013249 (-)