LOC100135946 (LOC100135946)


Basic Information

Item Value
gene id LOC100135946
gene name LOC100135946
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21997656 ~ 22000508 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124290.1
CCTGTCCAACCTATCCCATCGAAGAACATCACCATCTGACAAGATGCTCGCAAAATTCGGCCTGTGCGCGGTCTTCCTCGTCCTGGGAACTGCCGCCACCTTCGACACCGACCCGGAGGAAGCTTCTCCTCGCCGTGCACGCTTCTCATCCAACAGCCCCTcggaTGTGGCTAGGTGTTTGAATGGCGCTCTAGCCGTGGGATGTGGTACATTTGCCTGCCTGGAGAATTCTACCTGTGACACTGATGGCATGCACGATATCTGTCAACTATTCTTTCACACCGCAGCTACCTTTAACACACAGggtaaGACATTTGTAAAGGAGAGTCTGAGGTGTATTGCCAACGGCGTCACGTCTAAAGTCTTTCAGACCATCAGGCGCTGTGGAGTTTTCCAGAGAATGATTTCTGAGgtccAGGAGGAGTGTTACAGTAGACTGGACATCTGTGGTGTGGCTCGCTCTAACCCTGAGGCCATTGGAGAGGTGGTGCAGGTCCCTGCACACTTCcccaacaggtacTACAGCACTCTGCTCCAGTCCCTGCTAGCCTGTGATGAGGAGACAGTGGCTGTGGTCAGGGCAGGGCTTGTTGCTAGGCTGGGGCCAGACATGGAAACTCTCTTCCAGCTGCTGCAGAACAAACACTGCCCCCAGGGTTCTAACCAGGGTCCTAACTCAGCCCCCGCTGGCTGGCGCTGGCCAATGGGGTCGCCTCCTTCCTTCAAGATCCAGCCCAGCATGAGAGGAAGAGACCCCACCCACCTATTCGCTAGGAAACGCTCTGTGGAGGcattggagagagagatggagtagatTGGAGAAGAGGAGGCAGACATACACACCACTTATACCTTAAGCATACAttcatgtgtacacacacacaccacagctacCTTAAACACAAAACACACTCATGATAgctttgctcacacacactgactcacacgcacactgacacacacacattttcacacattttcacacacatgcacacacacatagcttTACCCTCAAATGATTAAGGCTAAATTATTAATGGAAGTTTGGGGCTGTTGTAATGTAGTATTTGATTTGGGGAAGTATCTATCTGTAAATGCTGTTGAAGGTATTTCTGTGTGGGTTGATACTTGATGAAAGGGGAGATGAAACCTGTTACCTAGAGCTTGAATGTGGAGGATTATATCTGCTCAGAATAGACTCGACTAAACACGAGAGCTGTTGAAAAGTCTGAACATTTAATATTAACAATTGAAACATTTCAAATGCCACCTAAGAAAACGAACCATCACTGTAGTTCCATTGGATTTCAACGTGGCACTACGGCCATGACATCCCCGTTTTGGCCAGTCATTAAAGACCGATGggtatattattataataatattattgATATTTATTTTCTTACAGAATGTTTAttaatgatgttgatgttgtgttgtatctagttGTAACTTGGTTTGAGTTTCCCCCAGTGGGTGGGGTTTGACATCCTGATATGACGTCACTGGCTGATGTGTTGCTCTATGAGGATGTCACCACCTCAGAGGGACAGTGTGATGTCACCATGCTGGTCGTGGGACTCACCGCGTCCCTCTGTCTTCATCTGTGTTAATGTAAGATCCTGTAGTGTGTAAAGACATTATAGAGTGATCCTATGCTGTGTTCCTCAGATGTGGTTATGTGGTGTATGTTTTGAGAtcctgtgtgagaatgtgtgcTAGTCTGGTACTTACTATACACCGTGGGGCTTGgggtcattctctctgctatgAATAAATGTTGTGATCTTCATAATTTTGTCTGAGGTGATTTGTGTCGAGACTCACTGGTGATTAAACG

Function

NR:

description
stanniocalcin

GO:

id name namespace
GO:0006816 calcium ion transport biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124290.1 True 1840 mRNA 0.47 5 21997656 22000508

Neighbor

gene id symbol gene type direction distance location
LOC110522824 LOC106563065 coding upstream 6730 21961475 ~ 21990926 (+)
LOC110523424 LOC106567937 coding upstream 39146 21954083 ~ 21958510 (+)
LOC110523423 LOC106568289 coding upstream 150419 21842068 ~ 21847237 (+)
LOC110523421 LOC106568255 coding upstream 174779 21816778 ~ 21822877 (+)
LOC110523420 LOC106568307 coding upstream 188732 21798340 ~ 21808924 (+)
LOC110523429 acty coding downstream 45463 22045971 ~ 22053104 (+)
LOC110523432 LOC106567996 coding downstream 189860 22190368 ~ 22221369 (+)
LOC110523445 LOC106568100 coding downstream 768157 22768665 ~ 22799421 (+)
dmgdh dmgdh coding downstream 873662 22874170 ~ 22903435 (+)
lhfpl2a lhfpl2 coding downstream 941697 22942205 ~ 23007315 (+)
G378489 NA non-coding upstream 16312 21980931 ~ 21981344 (+)
G378485 NA non-coding upstream 23558 21972588 ~ 21974098 (+)
G378478 NA non-coding upstream 44655 21952735 ~ 21953001 (+)
G378476 NA non-coding upstream 48320 21949085 ~ 21949336 (+)
G378474 NA non-coding upstream 50029 21947416 ~ 21947627 (+)
G378512 kctd9 non-coding downstream 33332 22033840 ~ 22036950 (+)
G378513 NA non-coding downstream 36875 22037383 ~ 22037854 (+)
G378570 NA non-coding downstream 38486 22038994 ~ 22039248 (+)
G378571 NA non-coding downstream 38841 22039349 ~ 22039566 (+)
G378573 NA non-coding downstream 39883 22040391 ~ 22040640 (+)
LOC110523400 LOC106568542 other upstream 838737 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1161097 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 1239155 20508074 ~ 20759255 (+)
G377022 NA other upstream 1400793 20591480 ~ 20596863 (+)
G376320 NA other upstream 2013808 19983261 ~ 19983848 (+)
G378660 NA other downstream 172027 22172535 ~ 22231920 (+)
G378832 NA other downstream 503244 22503752 ~ 22506270 (+)
G378868 NA other downstream 601602 22602110 ~ 22629669 (+)
LOC110522832 LOC106567816 other downstream 1623456 23623921 ~ 23678038 (+)

Expression


Co-expression Network