LOC110523432 (LOC106567996)


Basic Information

Item Value
gene id LOC110523432
gene name LOC106567996
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22190368 ~ 22221369 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977053.1
cccacccccaGTCTTCCCTCCCCACTTTCTGcctccagtctcccgtcttccctcCTCACTTTCTTCCTCCAGTCTCCCTTCTCCCGTtttccctcctcccccaccccagTCTCCCGGCGGCGGCCTAGCTCTTCCTTCCACTCCACCTCAGAAACACCAAGCGACTTGTATTATTTCCCATGCGACCATATACACGCACACAACCAGCGACTAACTTTTCTCAAACTCGCAAGGGTTGAATTTTCTATTTTTGAAGGATAATGGACGACAAAATAATTAAGAAAGTAGGCTTGTGAGCTGACTTTTCTTCGGGCTGATTTTACTCGGGAGGCTAACGTTAAGTAGGAGGAGAACGTATGTGCAGGAGGACAACTTATGTGCGTGCGTGTTTTAAACTTCTGCGACGTACAGCTTTCCATTGTTTTCGTTTTCCCTTTCAGTTTTAAGAGATTGCTAGTTGTTTTTACATCAGTATACGGTTATTCGTGGGGTCGTCGATGTGggttgtaacgttagctagtttttCTAGCCCAAAATAAAAGACGCGACAAGAAACGAGTGGAACAACTCCAGGAATCGACTAGCTAGTTAACTAGTTAGCTTAGCatggctaactaacgttagctagctaacaatgaacAGTCGTTGGATGCTTATTTTTGCAAAGTTTGCAACAACTCGTCTTGTTCATGGCTAATCTCGTTACTACCACTGGAAATCGTGGAAATCCAAATAATACAgtgtactagctagctaacgttagcagggtGTTTTGAAACTCGGTGGGTACGACATCACTTCCACGGCAAGACAACAGTGAGTGTGTTTTTAGAAATTCAAGATGCCGCAGCtggacggaggaggaggagatgatttGGGAGCCAACGATGAGTTGATCTCGTTTAAAGACGAGGGGGAGCAGGAGGAAAAGACCGCCGAGAATGTGTCCTCTGAGCGGGACCTGGACGATGTCAAGTCTTCACTGGTCAACGAGACGGAGAACAACAGCAGTTCGTCTGACTCCGAGGCAGTCAGTCATAGACGTCCCCAGCATCACATACCGGATTGGGAGAGTTATGTCAGACAGAGAGAGTTCGTTGCAGAAGctctgaGGAGACAGCAACACGACAGTGGGTTGTTCAAGGCATCTCTGTACGCTGGCTATCCCTTACTGATGATCCCTGACCTGGGTAACCTAGCCAACCTGGGCCACTTGGGGAACCTTGGTAACCCCTACCTTTCTCCTGGAGTCCTCTCACCCGGCTCCAGGACGTATCTACAGATGAAGTGGCCCATGCTGGATGTTCCTGGAACTTCTGCTTTAAAAgaccctcgctctccctcccctgctcacatgtccaATAAGGTCCCAGTGGTGCAGCATAGTCACCTGTCCCCCTTTTCCCCACTCCTGTCCTACAGTCCAGACCCCTTCCCTCCACGGAcaccccctcctcacctctcagCTGACACGGGtcttccccccaccccccacccagcAGAGCTCTCTCcttactaccctctctctcctggaggcATGGAACACATGACACACCCGCTGAGCTGGCTGCAGGGCCAGTCCATGTACGGTATTCCAGTGGGGGGGTTTAGACCATCCTACCCTGCAGCTCTCGCCTTGAACTCTTCCATGTCCAGCTTTGTGTCCAGTCGTTTCTCACCCCACATGGTCCCGCCTCCCCAGACGTCAGTCCCCCACCCTGCTATCGTTTCCACGGCGATCAAACAAGAACCGAGAGACAGCAACCAGCACggGAGGTGTGCTGTGTCtatgggggacagagaggaggagaagaagcctCACGTGAAGAAGCCTCTAAATGCCTTTATGCTGTACATGAAGGAGCAGAGACCCAAGGTGGTGGCTGAGTGCACCCTGAAGGAGAGCGCTGCCATCAACCAGATTCTGGGACGCAGATGGCACACTCTGTCTCGTGAGGAGCAGTCTAAGTACTATGATATGGCCCGCAAGGAGAGACAGCTACACTCCCAACTCTACCCTGGATGGTCAGCTAGAGACAACTACGGGAAGAGGAAGAAAAGGAAGAGAGATGGCAGGCCAGAGACTGCTCCAGAGGGACAGATGACACACCGCCAGTCAGCTGCTCCAGAGGAGCACTTCTCCGCGCAGCTCAAGAAGTCGTGTGTGTCGTATGGAACTCAGGAGAGACCCAGTGTGtctcacacacacctgacacacacacacctgtcccaggCTAGTCCCGCCTCCTCTCTGGACTCTCCAGCCACGCCCACCACTGCTCTGGCCTCCCCTGCTGCTCCCGCACCTACACACaccgaacacacacactcacactccgaGCACACACATCCTGAGCAGGTCCAGCCCCTCTCCCTCACCACCAAACCCCCTCGTCTGCAGTCACTCAGGGACACACACAGTCAGGCTTACACCCACATCCAgtctcacacacattcacatgtattaactcacacacacctccctctgccccctacccccaatacctcttcatcccCCTACTCTCATCCCCCATTTTCTCTCCACATGAGCTCATCCAGCAAACAGACTCCACCACTTCTGTCTCGACCAATCCCCTTTGCCTCTGGCTTAGCTCCTCCCACCTCTATCCACCAATCAACAATGAGCTCCCATCATGCCATGCTCCAGTCCCAGCCACTCTCCCTCGTCACTAGAAATAATAGTTAAAACCCAAAGACGCTAACCACAGATCTATGATCAGATTCCTCTAAGGCCAGCCGTAATCGTAAGCATTACACTACCCCTAACCACAGATACCTCTAAACCCTGTCTAATCATGGGTGGGATGAAAAAATATATGACCCCCTATCAGTGTGTAGGAGAGTCCACTCTACTATGTGGGCAGGGGTGAACAACTCCTTGAGGGCTACATGATGCTCCAGCCTAGCAACACACACAATTGAAATAGTGTTTGAATAGAGGTTTAAATGAAGATCATTATTAATTGATTAGCAGAATCATGTTAGTGATTGGGGGGGGAAAGCCTGCAACACCCCCTGTTTGTTGCCTTAGGATTAGGGTCAATTTCTTCCTACTTTTTTAATTGCTTTTTTTTGTCTgtaaataaactttttttttaaaccttttatAGATATTAGACCGGGTTTTATATTAGTATGGAAAGGAAACAATTATTGGTCAATATTTGACCACACCTCTTAACTTGTCTTCATGTAACTACATTTTTTTGTCAAATGGTATTGCAACGTCTTACCTTTTTTTGTATTCATTTGTCCAATTTGCTACTTGTATAAAATACAAAAAAGGAAAGGTACATTTTTAAAGAAAAATAGATCAAAGTACGTTTCAGTCTTTGTGGTAGTAATGTGTTTTctgttttccctccctcccctattcTTTTATAACCCCCCGTATGACTTGAGTCTTGATAATAAACATCTACTTATTTCTGAAA
>XM_021602112.2
ccacccccaGTCTTCCCTCCCCACTTTCTGcctccagtctcccgtcttccctcCTCACTTTCTTCCTCCAGTCTCCCTTCTCCCGTtttccctcctcccccaccccagTCTCCCGGCGGCGGCCTAGCTCTTCCTTCCACTCCACCTCAGAAACACCAAGCGACTTGTATTATTTCCCATGCGACCATATACACGCACACAACCAGCGACTAACTTTTCTCAAACTCGCAAGGGTTGAATTTTCTATTTTTGAAGGATAATGGACGACAAAATAATTAAGAAAGTAGGCTTGTGAGCTGACTTTTCTTCGGGCTGATTTTACTCGGGAGGCTAACGTTAAGTAGGAGGAGAACGTATGTGCAGGAGGACAACTTATGTGCGTGCGTGTTTTAAACTTCTGCGACGTACAGCTTTCCATTGTTTTCGTTTTCCCTTTCAGTTTTAAGAGATTGCTAGTTGTTTTTACATCAGTATACGGTTATTCGTGGGGTCGTCGATGTGggttgtaacgttagctagtttttCTAGCCCAAAATAAAAGACGCGACAAGAAACGAGTGGAACAACTCCAGGAATCGACTAGCTAGTTAACTAGTTAGCTTAGCatggctaactaacgttagctagctaacaatgaacAGTCGTTGGATGCTTATTTTTGCAAAGTTTGCAACAACTCGTCTTGTTCATGGCTAATCTCGTTACTACCACTGGAAATCGTGGAAATCCAAATAATACAgtgtactagctagctaacgttagcagggtGTTTTGAAACTCGGTGGGTACGACATCACTTCCACGGCAAGACAACAGTGAGTGTGTTTTTAGAAATTCAAGATGCCGCAGCtggacggaggaggaggagatgatttGGGAGCCAACGATGAGTTGATCTCGTTTAAAGACGAGGGGGAGCAGGAGGAAAAGACCGCCGAGAATGTGTCCTCTGAGCGGGACCTGGACGATGTCAAGTCTTCACTGGTCAACGAGACGGAGAACAACAGCAGTTCGTCTGACTCCGAGcagGCAGTCAGTCATAGACGTCCCCAGCATCACATACCGGATTGGGAGAGTTATGTCAGACAGAGAGAGTTCGTTGCAGAAGctctgaGGAGACAGCAACACGACAGTGGGTTGTTCAAGGCATCTCTGTACGCTGGCTATCCCTTACTGATGATCCCTGACCTGGGTAACCTAGCCAACCTGGGCCACTTGGGGAACCTTGGTAACCCCTACCTTTCTCCTGGAGTCCTCTCACCCGGCTCCAGGACGTATCTACAGATGAAGTGGCCCATGCTGGATGTTCCTGGAACTTCTGCTTTAAAAgaccctcgctctccctcccctgctcacatgtccaATAAGGTCCCAGTGGTGCAGCATAGTCACCTGTCCCCCTTTTCCCCACTCCTGTCCTACAGTCCAGACCCCTTCCCTCCACGGAcaccccctcctcacctctcagCTGACACGGGtcttccccccaccccccacccagcAGAGCTCTCTCcttactaccctctctctcctggaggcATGGAACACATGACACACCCGCTGAGCTGGCTGCAGGGCCAGTCCATGTACGGTATTCCAGTGGGGGGGTTTAGACCATCCTACCCTGCAGCTCTCGCCTTGAACTCTTCCATGTCCAGCTTTGTGTCCAGTCGTTTCTCACCCCACATGGTCCCGCCTCCCCAGACGTCAGTCCCCCACCCTGCTATCGTTTCCACGGCGATCAAACAAGAACCGAGAGACAGCAACCAGCACggGAGGTGTGCTGTGTCtatgggggacagagaggaggagaagaagcctCACGTGAAGAAGCCTCTAAATGCCTTTATGCTGTACATGAAGGAGCAGAGACCCAAGGTGGTGGCTGAGTGCACCCTGAAGGAGAGCGCTGCCATCAACCAGATTCTGGGACGCAGATGGCACACTCTGTCTCGTGAGGAGCAGTCTAAGTACTATGATATGGCCCGCAAGGAGAGACAGCTACACTCCCAACTCTACCCTGGATGGTCAGCTAGAGACAACTACGGGAAGAGGAAGAAAAGGAAGAGAGATGGCAGGCCAGAGACTGCTCCAGAGGGACAGATGACACACCGCCAGTCAGCTGCTCCAGAGGAGCACTTCTCCGCGCAGCTCAAGAAGTCGTGTGTGTCGTATGGAACTCAGGAGAGACCCAGTGTGtctcacacacacctgacacacacacacctgtcccaggCTAGTCCCGCCTCCTCTCTGGACTCTCCAGCCACGCCCACCACTGCTCTGGCCTCCCCTGCTGCTCCCGCACCTACACACaccgaacacacacactcacactccgaGCACACACATCCTGAGCAGGTCCAGCCCCTCTCCCTCACCACCAAACCCCCTCGTCTGCAGTCACTCAGGGACACACACAGTCAGGCTTACACCCACATCCAgtctcacacacattcacatgtattaactcacacacacctccctctgccccctacccccaatacctcttcatcccCCTACTCTCATCCCCCATTTTCTCTCCACATGAGCTCATCCAGCAAACAGACTCCACCACTTCTGTCTCGACCAATCCCCTTTGCCTCTGGCTTAGCTCCTCCCACCTCTATCCACCAATCAACAATGAGCTCCCATCATGCCATGCTCCAGTCCCAGCCACTCTCCCTCGTCACTAGAAATAATAGTTAAAACCCAAAGACGCTAACCACAGATCTATGATCAGATTCCTCTAAGGCCAGCCGTAATCGTAAGCATTACACTACCCCTAACCACAGATACCTCTAAACCCTGTCTAATCATGGGTGGGATGAAAAAATATATGACCCCCTATCAGTGTGTAGGAGAGTCCACTCTACTATGTGGGCAGGGGTGAACAACTCCTTGAGGGCTACATGATGCTCCAGCCTAGCAACACACACAATTGAAATAGTGTTTGAATAGAGGTTTAAATGAAGATCATTATTAATTGATTAGCAGAATCATGTTAGTGATTGGGGGGGGAAAGCCTGCAACACCCCCTGTTTGTTGCCTTAGGATTAGGGTCAATTTCTTCCTACTTTTTTAATTGCTTTTTTTTGTCTgtaaataaactttttttttaaaccttttatAGATATTAGACCGGGTTTTATATTAGTATGGAAAGGAAACAATTATTGGTCAATATTTGACCACACCTCTTAACTTGTCTTCATGTAACTACATTTTTTTGTCAAATGGTATTGCAACGTCTTACCTTTTTTTGTATTCATTTGTCCAATTTGCTACTTGTATAAAATACAAAAAAGGAAAGGTACATTTTTAAAGAAAAATAGATCAAAGTACGTTTCAGTCTTTGTGGTAGTAATGTGTTTTctgttttccctccctcccctattcTTTTATAACCCCCCGTATGACTTGAGTCTTGATAATAAACATCTACTTATTTCTGAAA
>XM_036977054.1
ccacccccaGTCTTCCCTCCCCACTTTCTGcctccagtctcccgtcttccctcCTCACTTTCTTCCTCCAGTCTCCCTTCTCCCGTtttccctcctcccccaccccagTCTCCCGGCGGCGGCCTAGCTCTTCCTTCCACTCCACCTCAGAAACACCAAGCGACTTGTATTATTTCCCATGCGACCATATACACGCACACAACCAGCGACTAACTTTTCTCAAACTCGCAAGGGTTGAATTTTCTATTTTTGAAGGATAATGGACGACAAAATAATTAAGAAAGTAGGCTTGTGAGCTGACTTTTCTTCGGGCTGATTTTACTCGGGAGGCTAACGTTAAGTAGGAGGAGAACGTATGTGCAGGAGGACAACTTATGTGCGTGCGTGTTTTAAACTTCTGCGACGTACAGCTTTCCATTGTTTTCGTTTTCCCTTTCAGTTTTAAGAGATTGCTAGTTGTTTTTACATCAGTATACGGTTATTCGTGGGGTCGTCGATGTGggttgtaacgttagctagtttttCTAGCCCAAAATAAAAGACGCGACAAGAAACGAGTGGAACAACTCCAGGAATCGACTAGCTAGTTAACTAGTTAGCTTAGCatggctaactaacgttagctagctaacaatgaacAGTCGTTGGATGCTTATTTTTGCAAAGTTTGCAACAACTCGTCTTGTTCATGGCTAATCTCGTTACTACCACTGGAAATCGTGGAAATCCAAATAATACAgtgtactagctagctaacgttagcagggtGTTTTGAAACTCGGTGGGTACGACATCACTTCCACGGCAAGACAACAGTGAGTGTGTTTTTAGAAATTCAAGATGCCGCAGCtggacggaggaggaggagatgatttGGGAGCCAACGATGAGTTGATCTCGTTTAAAGACGAGGGGGAGCAGGAGGAAAAGACCGCCGAGAATGTGTCCTCTGAGCGGGACCTGGACGATGTCAAGTCTTCACTGGTCAACGAGACGGAGAACAACAGCAGTTCGTCTGACTCCGAGcagGCAGTCAGTCATAGACGTCCCCAGCATCACATACCGGATTGGGAGAGTTATGTCAGACAGAGAGAGTTCGTTGCAGAAGctctgaGGAGACAGCAACACGACAGTGGGTTGTTCAAGGCATCTCTGTACGCTGGCTATCCCTTACTGATGATCCCTGACCTGGGTAACCTAGCCAACCTGGGCCACTTGGGGAACCTTGGTAACCCCTACCTTTCTCCTGGAGTCCTCTCACCCGGCTCCAGGACGtccaATAAGGTCCCAGTGGTGCAGCATAGTCACCTGTCCCCCTTTTCCCCACTCCTGTCCTACAGTCCAGACCCCTTCCCTCCACGGAcaccccctcctcacctctcagCTGACACGGGtcttccccccaccccccacccagcAGAGCTCTCTCcttactaccctctctctcctggaggcATGGAACACATGACACACCCGCTGAGCTGGCTGCAGGGCCAGTCCATGTACGGTATTCCAGTGGGGGGGTTTAGACCATCCTACCCTGCAGCTCTCGCCTTGAACTCTTCCATGTCCAGCTTTGTGTCCAGTCGTTTCTCACCCCACATGGTCCCGCCTCCCCAGACGTCAGTCCCCCACCCTGCTATCGTTTCCACGGCGATCAAACAAGAACCGAGAGACAGCAACCAGCACggGAGGTGTGCTGTGTCtatgggggacagagaggaggagaagaagcctCACGTGAAGAAGCCTCTAAATGCCTTTATGCTGTACATGAAGGAGCAGAGACCCAAGGTGGTGGCTGAGTGCACCCTGAAGGAGAGCGCTGCCATCAACCAGATTCTGGGACGCAGATGGCACACTCTGTCTCGTGAGGAGCAGTCTAAGTACTATGATATGGCCCGCAAGGAGAGACAGCTACACTCCCAACTCTACCCTGGATGGTCAGCTAGAGACAACTACGGGAAGAGGAAGAAAAGGAAGAGAGATGGCAGGCCAGAGACTGCTCCAGAGGGACAGATGACACACCGCCAGTCAGCTGCTCCAGAGGAGCACTTCTCCGCGCAGCTCAAGAAGTCGTGTGTGTCGTATGGAACTCAGGAGAGACCCAGTGTGtctcacacacacctgacacacacacacctgtcccaggCTAGTCCCGCCTCCTCTCTGGACTCTCCAGCCACGCCCACCACTGCTCTGGCCTCCCCTGCTGCTCCCGCACCTACACACaccgaacacacacactcacactccgaGCACACACATCCTGAGCAGGTCCAGCCCCTCTCCCTCACCACCAAACCCCCTCGTCTGCAGTCACTCAGGGACACACACAGTCAGGCTTACACCCACATCCAgtctcacacacattcacatgtattaactcacacacacctccctctgccccctacccccaatacctcttcatcccCCTACTCTCATCCCCCATTTTCTCTCCACATGAGCTCATCCAGCAAACAGACTCCACCACTTCTGTCTCGACCAATCCCCTTTGCCTCTGGCTTAGCTCCTCCCACCTCTATCCACCAATCAACAATGAGCTCCCATCATGCCATGCTCCAGTCCCAGCCACTCTCCCTCGTCACTAGAAATAATAGTTAAAACCCAAAGACGCTAACCACAGATCTATGATCAGATTCCTCTAAGGCCAGCCGTAATCGTAAGCATTACACTACCCCTAACCACAGATACCTCTAAACCCTGTCTAATCATGGGTGGGATGAAAAAATATATGACCCCCTATCAGTGTGTAGGAGAGTCCACTCTACTATGTGGGCAGGGGTGAACAACTCCTTGAGGGCTACATGATGCTCCAGCCTAGCAACACACACAATTGAAATAGTGTTTGAATAGAGGTTTAAATGAAGATCATTATTAATTGATTAGCAGAATCATGTTAGTGATTGGGGGGGGAAAGCCTGCAACACCCCCTGTTTGTTGCCTTAGGATTAGGGTCAATTTCTTCCTACTTTTTTAATTGCTTTTTTTTGTCTgtaaataaactttttttttaaaccttttatAGATATTAGACCGGGTTTTATATTAGTATGGAAAGGAAACAATTATTGGTCAATATTTGACCACACCTCTTAACTTGTCTTCATGTAACTACATTTTTTTGTCAAATGGTATTGCAACGTCTTACCTTTTTTTGTATTCATTTGTCCAATTTGCTACTTGTATAAAATACAAAAAAGGAAAGGTACATTTTTAAAGAAAAATAGATCAAAGTACGTTTCAGTCTTTGTGGTAGTAATGTGTTTTctgttttccctccctcccctattcTTTTATAACCCCCCGTATGACTTGAGTCTTGATAATAAACATCTACTTATTTCTGAAA

Function

NR:

description
transcription factor 7-like 1-B isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977053.1 False 3455 mRNA 0.49 12 22190368 22221369
XM_021602112.2 False 3457 mRNA 0.49 12 22190369 22221369
XM_036977054.1 True 3373 mRNA 0.49 11 22190369 22221369

Neighbor

gene id symbol gene type direction distance location
LOC110523429 acty coding upstream 137264 22045971 ~ 22053104 (+)
LOC100135946 LOC100135946 coding upstream 189860 21997656 ~ 22000508 (+)
LOC110522824 LOC106563065 coding upstream 199442 21961475 ~ 21990926 (+)
LOC110523424 LOC106567937 coding upstream 231858 21954083 ~ 21958510 (+)
LOC110523423 LOC106568289 coding upstream 343131 21842068 ~ 21847237 (+)
LOC110523445 LOC106568100 coding downstream 547296 22768665 ~ 22799421 (+)
dmgdh dmgdh coding downstream 652801 22874170 ~ 22903435 (+)
lhfpl2a lhfpl2 coding downstream 720836 22942205 ~ 23007315 (+)
LOC110523451 ap3b1 coding downstream 844285 23065654 ~ 23158020 (+)
tbca tbca coding downstream 972505 23193874 ~ 23203566 (+)
G378601 LOC106567986 non-coding upstream 9539 22179681 ~ 22180829 (+)
G378653 NA non-coding upstream 30180 22159909 ~ 22160188 (+)
G378630 NA non-coding upstream 38898 22128817 ~ 22151470 (+)
G378615 NA non-coding upstream 84015 22100494 ~ 22106353 (+)
G378590 NA non-coding upstream 85786 22072417 ~ 22104582 (+)
G378678 NA non-coding downstream 16082 22237451 ~ 22237915 (+)
G378682 NA non-coding downstream 19920 22241289 ~ 22241544 (+)
G378683 NA non-coding downstream 20265 22241634 ~ 22241965 (+)
G378684 NA non-coding downstream 20739 22242108 ~ 22242323 (+)
G378685 NA non-coding downstream 22268 22243637 ~ 22243875 (+)
LOC110523400 LOC106568542 other upstream 1031449 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1353809 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 1431867 20508074 ~ 20759255 (+)
G377022 NA other upstream 1593505 20591480 ~ 20596863 (+)
G376320 NA other upstream 2206520 19983261 ~ 19983848 (+)
G378832 NA other downstream 282383 22503752 ~ 22506270 (+)
G378868 NA other downstream 380741 22602110 ~ 22629669 (+)
LOC110522832 LOC106567816 other downstream 1402595 23623921 ~ 23678038 (+)
G380340 NA other downstream 1519065 23740434 ~ 23741459 (+)

Expression


Co-expression Network