LOC110523445 (LOC106568100)


Basic Information

Item Value
gene id LOC110523445
gene name LOC106568100
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22768665 ~ 22799421 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977064.1
AAATTCTAAGTTGGATGACCGTTGAAAACGATTTTTCCCAGATGGAGCTCgattttttccgagttcccagatgtcttgaacgcactgaagtctgagatttacGAGTTCCCATATGTTTTGAACGCGACAAGAGCTGTGATGAATGGGATGAGAGGAGAAATCAGAGACTACACAAACAGACGGCTGAAGAAGGGAGCCGTTCGATGGAGCGAAAAGAGGTCGTGATTTGACATTTGAGATCTCTGTCTGATAAATAATATCAACGAACTGGCAATCGTTCATATTTAAACATAATTTACCATAGCATTTCATATTCGCCCGGCATCTTAGATGCTAGCTGCTTGTCTGATCTGGTACTAGAGATGGTGGAGCCATGAGAATGCACCAAGTCTTTCCGCGAAAACAGATGGGAGATGAAGCCTACTCGACAAAAAAACACATTCCTCTGTAGCTAAAAATGAGTTTATTATTGTTGCAGATGTATTTATGATGTTAGTGCCATGCAATGATGCGTTTGATAAGCTGTAGTAGAATAGCTGCTGGAGGAATTTTGATGGCACTTACGACGCCAGGGAAAGAGGCAACGAGTAAATTGTGCTATTTTGAACAGTCGGGCCTTACAAAGTGACATGCAGGAATGAATGTTCAGCATTTTTCTCGCCCGAGGATAACTGTATGCGGTGCAGGCAGCTGGTCACATTGAAAGCGGCGGTGTCTTTGGAGAGTAGCGAAATACAAGGCAGCGGAGAGGAGCGCCGAGCTGTAATACCTAAGTCCGTCTAGAACCAAGTGGATATTTTAAGATTATTTTAGCAGCCAAGATAAGATTTTGTTCTGCCAATATTAATGCAAGCGGTCCCTATTTACCTGCCTTATAAGTGTAAAATGAGGTTCGCGCTACATGGGAATTAAAAACAGTCTGTCAATCATGTATGTGGTCCTTGGTAGCCAACATTAGCTTAGCTGCTATCGTCGTTGAGCATGATTGAAAAGTGCATATCATTTATCTAACGTCAACACCGATGTTTTCGATCCCCATGCATGCACCGACACGTTTGTTTGGGAGAGCTTTCAACCAACACCCACAGCGTAAAACAGACGAACAGGCTATGTCGGCGTGAAGGGAACCACACTGACTATCTCGAGTACCTCCTCAAGCCATAGCCGTCAACAGCGTTGTGAAGAACCGATTATTGGAGAGGAAAACACAGTAGCTTGTTCATTCCCGCGTTGGAGCCCTCGGCGACCACGGCCTGAATCCCTTCGATTAACCGACCAAGCAAAATGGGAGAGCAGCCCATCTTCAGTACGAGGGCACATGTCTTCCAGATCGACCCCACCACCAAGAAGAACTGGGTTCCCACTAGTAAACACGCCGTCACAGTCTCCTACTTCTACGACAGCACGCGCAACGTCTACCGCATCATCAGTCTGGACGGctctaaggcAATCATCAACAGCACCATCACCCCCAACATGACCTTCACCAAGACCTCCCAGAAGTTTGGCCAGTGGGCTGACAGCCGAGCCAACACCGTCTATGGCCTGGGCTTCTCCTCAGAGAACCACCTgctcaagTTTGCAGAGAAGTTTGCAGAGTTTAAAGAGGCGGCCCGATTAGCCAAGGAGAAATCCCAGGAGAAGATGGAACTCACCAGCACCCCCTCTCAGGAGTCGGCCACCGGTGACCTGCAGTCACCTTTGACCCCGGAGAGCATCAACGGCACTGATGACGAGAGGGGCACCACCCCTGAAATGCCGCAGCACCCACCCGAGCCCCGTCCCGAGCCGTCTCAGAACCAGCTGCCCTTCTCCCACAGttcGTCCAGTATTAACAAGCACTGGGAGGCCGAGCTGGCAGCCCTGAAGGGCAACAATGCCAAGCTGACAGCAGCTCTGCTGGAGTCCACAGCCAACGTCAAACAGTGGAAACAACAACTGGCTGCTTAccaggaggaggctgagagacTACACAAACGGGTGACAGAGCTGGAGTGTGTTAGTGGTCAGACGCCAGTCATCAAATCCCAGAAGACTGAGCTCAACCAGACGATAGAAGAACTGGAGTCAGCATTAAAAGCcaaggaggagGAACTAGAGAGGTTGAAAGAGGAAGTGGAGAGTGGTAATGACTTCCAGACTCAGAAGGAGTCGCTAACACATAAACTACAGgagactgaggagaggaaccAGACGTTGGAGGCCCAGCTGGGGCAGTTGGAGCTGCATCTGGAGGGCAGTCAGCTAGAGAGCGAGGCCTTCAGGAAGAGTCTGCGGTCCCTGCTGGAGCTGCTGGACGGGAAGATCTTTGAGCTgacagagctccgagacagccTAGCCAGACTCATCGAGGACAGCAGCAGCTAGAAGAGACGAGAAGTGCTACGACAGAGCCCCCAAGTGGAGCACCATCGCCACCATAATAACATAGTGACTGGAAAATGAATTGTAGTCAGTGCACGAGGGCACTGTATGAAAATATTCACACACTGCTATTAGTACATACACAGTCATTATTCTTCACTAACATGCACATAATCAAGCATGTGTTGATTATGCCACATGCTTGAACATAATTGTAAATAGATAGACTTGCTCGCTTGGATTCTCTAGTTTTGGCTAATGTTCACTACATATTGCTGGTACACATGTATACTATATGAACATACTCACacactttatacacacacacacacttcagaggTCCTGTCGAGGCTTTGCTTGGGCCCTGCCTTCCATCTCTTTGCTCTCCCTGTGGGATGTTCTTTAcacattacagactacaagctGCTCAAATATCTATTTTCTCTCTGCTTTTTTTTGCCAAGTCTGGCTAGCATTCCATAGGAGAGGATGTTGAATAGGGTGGGTTATTTTGCTTTGGGTTTTTCTTCCATTACAGACACTATTAACAGAAATAGGAAGCCCTCATTTTCTATATTTATTTGGTGCAAAGTTCAGATTAGTTGCTGGTGGATGTTTTTGTTTAATCTTTGCTGTTGTCCGTCATGGGTTCAGGTCTGTTTTCTAACTATTCTGCATATACCACTTTATTATTCAGTTATTACTACAGTACTATTATTGCTCTGGTTGCTATGGAGATATCATTGTCAGCCAAATGGACAGTCCGATTAGATGAGGTCATGGAGATGTAGACAGTTGTACTCACTGATCCTTACAGCGTTTCACTGGACTCTACGGCCGTTTGCTCTGAGGCCCCATCTAACACTGGGCTAGGActaagggtcagaggtcagacagATGACCTCCCAGTGACCTTTGTTTTTAAATGCTCCTAATGTCCTCCTATCACAACATTTCCATGGAGATTAAAGAAGAATGTGGCATCTTGTCCAAGATTGAGGACCGATCTGGGACAACCTTCTATACTAAATGAGCAATATAAAGAGAGAGCGTCAAGAGTAAAAATACACATTTCAGTCTCGCTTTCAGgtattttcctcctcttctgggAAATGTAAGGAGAGACGAGGTGGAAACAACGCCAACCCAAGGCCAGAAGCTGGGGTTTGGGTCAGCAGTTACTACAAGTCTTTCCTTTCTATAAACTTTTTTATTACAAATACTAATATAACACATTTATAGTGCACTTGTGAAAATGGAATTGAATGTTTGGGTGAATCCAAAactatttttctttattttcattcTCCTTGTTTCTGTTACAACTTGAAGTGCAGTGATTGATTGGTTCCTATGTTTTCCCTTAATTTATTATTCCAGATATATTATAACCACAGATTGAGAATTTTATGAAACAAATTTTTGTTTGAACTTAATGATTTTCATGTCTGGTATGTGGGTGTCAAGGTAGATTTATTATTTTcttggtgtaaaaaaaaaagaaaaacgggCAATATTTTTGAACTACTTAAAAAGGAAATGGATTTACAGAGACCCTTGTGCATAGCATGTGTGGTTTGCAGAGACATTATTTCCTTTTGCCAAATGTTTTCCTGTACAGAATATGAATTTTGCTGACATTGCCTTTGGTACAAAGATGCATCAATGGTAGCTAACTACGGATCTTTTGTCGGGTTTACTATTGCCAAAAATCTGTgataatgtataaaaaataaaactataTGTATACCTGAAGAACACTATTTAAGGGCTTGTTGGTTCTGGTATCTTTGAGAGATTTGAATGTGGTTTCTGGGCTGGTTGGCGTTTTCAATTATGATCTGTACTACAATTTGAAAGGGAATAATGTTTGAGTAATAATTTTAAATGATTATACCACATGCTTAAACAATTGTAATTGAGTTTAtagtaaaatgtaaaaaaaaaaaaa

Function

NR:

description
homer protein homolog 1-like

GO: NA

KEGG:

id description
K15010 HOMER; homer

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977064.1 True 4315 mRNA 0.44 9 22768665 22799421

Neighbor

gene id symbol gene type direction distance location
LOC110523432 LOC106567996 coding upstream 547296 22190368 ~ 22221369 (+)
LOC110523429 acty coding upstream 715561 22045971 ~ 22053104 (+)
LOC100135946 LOC100135946 coding upstream 768157 21997656 ~ 22000508 (+)
LOC110522824 LOC106563065 coding upstream 777739 21961475 ~ 21990926 (+)
LOC110523424 LOC106567937 coding upstream 810155 21954083 ~ 21958510 (+)
dmgdh dmgdh coding downstream 74749 22874170 ~ 22903435 (+)
lhfpl2a lhfpl2 coding downstream 142784 22942205 ~ 23007315 (+)
LOC110523451 ap3b1 coding downstream 266233 23065654 ~ 23158020 (+)
tbca tbca coding downstream 394453 23193874 ~ 23203566 (+)
LOC110523452 otp coding downstream 409312 23208733 ~ 23214815 (+)
G378962 NA non-coding upstream 17860 22750582 ~ 22750805 (+)
G378959 NA non-coding upstream 22709 22745728 ~ 22745956 (+)
G378914 NA non-coding upstream 41310 22725665 ~ 22727355 (+)
G378908 NA non-coding upstream 46840 22657319 ~ 22721825 (+)
G378863 NA non-coding upstream 192549 22569326 ~ 22576116 (+)
G378912 LOC106568093 non-coding downstream 282 22799703 ~ 22801978 (+)
G379021 NA non-coding downstream 56648 22856069 ~ 22863242 (+)
G379066 NA non-coding downstream 150325 22949746 ~ 22951909 (+)
G379100 NA non-coding downstream 208655 23008076 ~ 23008349 (+)
G379102 NA non-coding downstream 209940 23009361 ~ 23009598 (+)
G378868 NA other upstream 138996 22602110 ~ 22629669 (+)
G378832 NA other upstream 262395 22503752 ~ 22506270 (+)
G378660 NA other upstream 536745 22172535 ~ 22231920 (+)
LOC110523400 LOC106568542 other upstream 1609746 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1932106 20831111 ~ 20842676 (+)
LOC110522832 LOC106567816 other downstream 824543 23623921 ~ 23678038 (+)
G380340 NA other downstream 941013 23740434 ~ 23741459 (+)
LOC110523468 vamp5 other downstream 1039103 23838502 ~ 23844345 (+)
G381239 NA other downstream 1888318 24687739 ~ 24776429 (+)

Expression


Co-expression Network