dmgdh (dmgdh)


Basic Information

Item Value
gene id dmgdh
gene name dmgdh
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22874170 ~ 22903435 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602137.2
ATGAGAAGAGGCAGGAATTTGAGAAAAGGCAGGAACTTGAGAAGAGGCAGGAACTTGGGAAAGGGCAGGAACTTGGGAAGAGGCAGGAACTTGGGAAGAGGCAGGAACTTGGGAAGAGGCAGGAACCAGGCTCTGCGGAGTGGCCAGTCCCGTGGAGTGCCGGTGGAGATTATACGAGTACATGGCGATTAAGGCCAGATCGATCTTCAACCAAGATAGTCATAAGGCCAGATCCTAGAGCTCCAATttctccgacctgaagatcactgatgtcacgATTTTTCCCACTCTGAGCTCGTTTTtacctgagttcccagttgttttgaacgcaccaAGTTTCACTGTGCCTAAATTGACTGGCGCTCTGCGCGAACGAGGGCGTGTTCAGCCAACAAAATAGTGCTTTGGTATAGAAGGCCTGCAGTAAATTGCGGTGGGGAATTAGGCAGAGGTGGTTCTGGTGTGCTTTGTGTTTTAATAGATATTTTAATTAGTTAAACCATGTCTAGGTTTTTTAACGCAATTAATACTCACATCCGGAGAGATTTTGCCGCATATCGCGCTATTGTCTGTATTCCACTGCGTACAATAAGCTACACTTCGCAGAAACATGTGGGAAATGGGGACAGCACTATGGTCCTGGGGAAGAGGTGGAAGGACGTGGCTGAGACGGTGATCATTGGAGGGGGCTGTGTTGGAGTCAGTCTGGCCTATCACCTGGCCAAGGCTGGACAGAAGGATGTGGTCCTGCTGGAGAAGTCTGAACTGACTGCTGGATCCACCTGGCACGCTGCTGGTTTGACCACGTACTACCACCCTGGTATCAACCTGAAGAAGGTCCATTACCACAGCATCAAGCTGTATGAGAGTCTGGAGGCCGAGACAGGACAGGCGGTGGGTTTCCACCAGCCAGGCAGTATCCGTATTGCCTCCACCCCAGTCAGAGTGGATGAGCTGAAGTACCAGATGGCAAGAACCCACTGGCACCCCACGCCTCAGTGGCTCATCACCCCTGAGAAGATCAAGGAGCTCTTCCCCCTGCTCAACATGGACAAGGTGCTAGCGGGTCTATATAACCCAGGAGACGGCCATATTGACCCCTACTCCCTAACCATGGCTCTGGCTGCAGGGGCCCGTATGTATGGAGCCCAGATCTACAACCCAGCCCTGGTCTCTGGCCTCACACCCACCAGTGATGGGAAGTGGGATGTCCAGACCCCACACGGGACCATCAGAGCTAACCGCATAGTCAACGCCACAGGTTTCTGGGCCCGGGAAGTTGGCCAGCAGATTGGCTTTGACCACCCCACTATCCCTGTCCATCACCAGTATGTTGTCACGGCAACGGTGCCTGAGGTAAAGGCACTAAAGGCAGAGCTGCCAGTGATCAGGGACCTGGAGGGTTCCTACTAcctcagacaggagagagatggactgCTGTTTGGACCCtatgagaaagaggagaagatggtGCTGCAGGACTCCTGGGTTAGAGATGGAGTACCACCAGgttTTGGTAAGGAGTTGTTTGAGTCAGACCTGGACCGTATCATGCACCACGTAGAGATGGCCATGGAGATGGTGCCTGTGCTGAAGAATGCTGACATCATCAACATTGTATCTGGACCAATCACCTACACCCCTGACCTCCTTCCTATGGTCGGACCGCACCAGGGAGCACGTAACTACTGGACCGCTATCGGCTTCGGGTATGGAGTGATCCATGCCGGTGGCATTGGGAAGTTCCTCAGTGATTGGATCGTGACAGGGGAACCCCCCTATGACCTCATTGAGTGTGACCCCAACCGGTATGGAAAATGGACCACTGTACCCTACTTGTGTGCCAAAGCCAGAGAGTCCTATGGATTCAACAACGTGGtgGGCTACCCTAAAGAGGAGCGTTTTGCTGGCCGTCCGACCAACAGGACGAGTGGTGTGTATGAGCTGCTAAAGGGAAAAGCTTCCATGGGGTTCCACGCCGGCTGGGAACAGCCTCACTGGTTCTATAAGCCTGGAGACAATGCCGGTTACAAGCCCAGTTTCAGGCGTACCAACTGGTTCGGTCCGGTGGGGAGGGAGTGTAAGCTGGTGATGGAGAAGGTTGGGGTCGTTGACCTGACACCCTTCGGCAAGTTCATGGTTAAAGGGAAAGATTCTCATAAACTGCTGGACAGACTGTTCGCCAACACTATGCCCAAGGTGGGCCTGACTAACATCAGCCACATGTTGACCCCCACTGGGAGAGTCTACGCTGAGGTCACCATTACCCAGCTCACACCTGGAGAGTTCCTCCTCATCACAGGATCTGGATCAGAGCTGCATGACCTCAGGTGGATGGAGAAGGAGGTAGCAGAGGGGGCTTATGATGTAGATATTTCCAACGTGACAGAGGAAATTGGGGTGTTGGGTGTGGCTGGACCAAAGGCTAGAGATGTTCTACAGAAACTCACTCAGGAGGACATGAGCGATGCAAGCTTTAAGTTCCTCCACTGCAAACCCATTCAACTGGGTGGCATCAACCTCAGAGCTATCAGGATCTCTTACACAGGTGAGTTGGGCTGGGAGCTGTACATTCCTCACAAGGACATGGCAGCTGTGTACCAGGCTATCATGGCAGCAGGAGAGGACGAGGGCATCGACAACTTTGGTACCTACGCCATGTCATCACTACGACTGGAGAAAGGCTTCAGAGGCTGGGGTGCAGAGatgAACTGTGACACCAACCCCCTGGAAGCTGGTCTGGACTACTTCATCAAACTCAACAAGcATGCTGACTTCATCGGTAAGGCAGCGCTGCAGGAGATAAAAGCTAAAGGTCTGAAGAGGAAGCTGTCATACATCACCATGGAAACGGATGATGTTGACCCCGAGGGCAACGAGACTATCTGGCTCAATGGCAagGTGGTTGGTAACACTACATCTGGGGCCTACAGCTACACCGCCCAGCAGAGCCTGGCGTTTGCCTACCTGCCAGTGGAGCTGTGTTCTGTAGGGCAGAAGGTGGAAGTGGAGATGTTGGGGAGGAAGTACCCTGCCATGGTGGTCCAGGAGCCACTGGTCCTCACAGAACCAACCAGGACCCGGCTGCAGAAGAAGAGCAAGGCATAGACACTGGGGACAGGCAGAAAACCAGCTTAGAACTAGGGTACCAGACCTGGGTCGAAAATAggatgttttctttcaaatatttACAGTATGCTCCTGGTGCTAATTTCAACCCAGGTTCGACCAAGGTCCGCAAACGGTAGAGCTGACACCAACCAAGCAACTACACTGTGAAGTGAACTATGCTGGCTGACAGTTACTTATGAAAAAGGCTGAAATGTGATGAATGGtactcaaatgacaccctatttcctattttgTGCACTGtttgtagtgtactatatagggtatCATTTGAGACAGACTGACTGTGAAGTCAAATAAAAAAAGACTTTCCTGTTTGGTCATCTGGTGAGGAAGAATCAGCTAGAGCAACCTAGAATGTGCATATAAGAGCTTAACTCTAGGTTCCAATGTGGACCTATGGACATATTGGAACATAGACCTAGACTTGTATAGTCTCAGTATTCAGAGTATTacaggtccaatgcagccatttttatctcgaATTCAAATCATTTCTTGGTAACAATTAAGTATCcaactgtgattgttttaaaaaaaatcaccCCTAAGAAAAAGAAGGGGAAAAAtgtgcaatttctcaagcaagaattttgttaGGACTCTATGGGAGTGGTCTTATACtaactgttattggcagagaggtttggaactctttcttattggtctattaactcatttactgcctggtgatttcaacaggcaggccaaaactccatcccaccaaaagaggctgaaatttcaggtggtcttttcaaacagctaaaagggcattatcattttcACAGTTTTGTTCTAACCTCGtagtgtggaaatgtatataaaatacTGAGCCTTTAAAGTCATGATACCTTTGGCTTAAGTCTTGAATCCATCCAACCCTTAGAATGTGGTCATTAAGTACCTATACCTTAACTGCTTAGCAACAGAGCCAATCATTACTCTTAGGTGGCATTTCATGTCTCAGTATTGCAGTGTTATCTGTTTGAATGGCTTTTTAAATTCCAGATATTAAGGGTTATTATGGGGTTGAAAAGCAGAGGCTTGGTAGAAGTGTTATTGTAGCTACACTATCACAAGAAGAATGGGCCAAATAGATGCTGATTTACTTCCTACTGTAGTCTCTACATTATGTGGAAGAGACAATTAACTATGATAATGCTTTGCACAAACTTTAGTCTTGAAAGCAGGGCGGGCATAATTGCGGATAATAATCAATTATGCACAAGACAGGACAAGCTAAGATAACTGTTTTTTTTTAGAGCACAATGTCTTTATCTTTTCAATTATTTTGTCATTGTCTGTACATTTAAACATTGGTTAATTAAATCCAATGCCAAGCTTG

Function

symbol description
dmgdh Predicted to enable dimethylglycine dehydrogenase activity. Predicted to be active in mitochondrial matrix. Orthologous to human DMGDH (dimethylglycine dehydrogenase).

NR:

description
dimethylglycine dehydrogenase, mitochondrial

GO: NA

KEGG:

id description
K00315 DMGDH; dimethylglycine dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602137.2 True 4474 mRNA 0.48 17 22874170 22903435

Neighbor

gene id symbol gene type direction distance location
LOC110523445 LOC106568100 coding upstream 74749 22768665 ~ 22799421 (+)
LOC110523432 LOC106567996 coding upstream 652801 22190368 ~ 22221369 (+)
LOC110523429 acty coding upstream 821066 22045971 ~ 22053104 (+)
LOC100135946 LOC100135946 coding upstream 873662 21997656 ~ 22000508 (+)
LOC110522824 LOC106563065 coding upstream 883244 21961475 ~ 21990926 (+)
lhfpl2a lhfpl2 coding downstream 38770 22942205 ~ 23007315 (+)
LOC110523451 ap3b1 coding downstream 162219 23065654 ~ 23158020 (+)
tbca tbca coding downstream 290439 23193874 ~ 23203566 (+)
LOC110523452 otp coding downstream 305298 23208733 ~ 23214815 (+)
wdr41 wdr41 coding downstream 334368 23237803 ~ 23251588 (+)
G379021 NA non-coding upstream 10928 22856069 ~ 22863242 (+)
G378912 LOC106568093 non-coding upstream 72192 22799703 ~ 22801978 (+)
G378962 NA non-coding upstream 123365 22750582 ~ 22750805 (+)
G378959 NA non-coding upstream 128214 22745728 ~ 22745956 (+)
G378914 NA non-coding upstream 146815 22725665 ~ 22727355 (+)
G379066 NA non-coding downstream 46311 22949746 ~ 22951909 (+)
G379100 NA non-coding downstream 104641 23008076 ~ 23008349 (+)
G379102 NA non-coding downstream 105926 23009361 ~ 23009598 (+)
G379104 NA non-coding downstream 107468 23010903 ~ 23011258 (+)
G379105 NA non-coding downstream 110043 23013478 ~ 23013715 (+)
G378868 NA other upstream 244501 22602110 ~ 22629669 (+)
G378832 NA other upstream 367900 22503752 ~ 22506270 (+)
G378660 NA other upstream 642250 22172535 ~ 22231920 (+)
LOC110523400 LOC106568542 other upstream 1715251 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 2037611 20831111 ~ 20842676 (+)
LOC110522832 LOC106567816 other downstream 720529 23623921 ~ 23678038 (+)
G380340 NA other downstream 836999 23740434 ~ 23741459 (+)
LOC110523468 vamp5 other downstream 935089 23838502 ~ 23844345 (+)
G381239 NA other downstream 1784304 24687739 ~ 24776429 (+)

Expression


Co-expression Network