LOC110523452 (otp)


Basic Information

Item Value
gene id LOC110523452
gene name otp
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23208733 ~ 23214815 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602145.2
CTCCTTTTTTAACCACAAACAGAATTTGCTTTTATTTaggctatatatattttttaaacaggtTAAAGTCATAGAGATTTTTTTGAAATAGCATTTCGCACTGGAGAGGTGCGCAATGCTTTCGCACGCCGACCTCCTGGATGCTCGCCTCGGGATGAAGGATGCCGCGGCAGAGCTGCTGGGTCACAGGGAGGCTCTGAAGTGCAGGCTAGGTGGTGGAGTTGGACCTGACCCCGGCCACTCCGGCGAGCTAGCCCCGGGGCCAGACACCGTGGAGGGGACCACCATGCTCCCTGGAGACGATATCAACAATGGTGGATCCAACCCTTCCGGCGTGCAGGCCAACAGTAAAGAGCAACAGGACAAGCAGCAGCAGAATAACTCCAGCCAATCCGGAGGAAGTCAGAGTCAGAAACAGAAGCGACACCGGACCCGATTCACTCCAGCCCAACTTAACGAACTGGAGCGCAGCTTCGCCAAAACGCACTACCCAGATATCTTCATGAGGGAGGAACTGGCCCTACGGATCGGCCTAACGGAATCTCGCGTTCAGGTAACGGAATCTCGCGTGCAGgtTTGGTTCCAGAACCGACGCGCCAAGTGGAAGAAGCGCAAGAAGACCACCAACGTTTTCCGCGCTCCGGGAACGCTGCTGCCCACCCACCACGGCCTGCACAGTCAGTTCAACTCTGCTGCTGCCGCCGCCGCGGCCATGGGCGACAGCCTGTGCTCCTTCCACGCCAACGACACCCGCTGGGCCACGGCAGGGATGCCAGGCGTCTCTCAGCTGCAGCTCCCTCCAGCCCTGGGTCGCCAGCACCAGCATGCCATGGCGCAGTCCCTGTCCCAGTGCAGCCTGTCCGGCCCGCCGCCCAACTCCATGGGGCTATCCAACATGTCGTCGAACGGATCCGGACTCCAGTCTCACCTCTACCAGAACCCGTTCCCCGGGATGGTCCCGGCCTCCCTGTCCGGTCCCACCAACGTGACGAGCTCTCCCCAGCTGTGTAGCTCCCCGGAAAATGACGTCTGGAGAGGGACGAGCATCGCCTCCCTGCGGCGAAAAGCGCTGGAGCACACAGTATCCATGAGTTTTACTTAGTAGTAGGCCAACCACCACCAAGCCAAGCACCACGTTTTAAGCGTTTTTCTTTTTACTTTGTCATCTatcattttttgttttgttgttgaacACATCCAGCCCAATACAGTTGGACAAGGATGAGAATGTCTCCAAGCAAAAAAAGCAAGGCAGCTGCAAAACAACAGCCACAGATTTGTTGACACACTAATACTAAAACCAAACGATTTGAAGGTGGATAAATGGGTAAATGTTTAGCTTATTCATTTATGATGTGCATGTATTGATTTATAACTTTTATAACTTGATTTATTTTACATGTAGGctatgtatatttatttatttgtttatcattttatttattaaaaaatatatatttaccacCTCGTTTTCATTTTCTTTGTCTATAACAAAATAGTGCTGATATTTGCTACTGGAGTTTCTAACAGTTTCCACCGGCCGATGGTCGAGGGTGTAAAAACGCTCAAAAAAGAATAAAACTCGTTTTTAATGTCACCTGCTGCACAGCATGTAACCATGATTGGCCACGGGCATGCGCAGTGCACGTGCAGATCTCACACACCTGGGAGTTTTTTTTGTTTGAAAAGCATACAAAGATTCATACAACGGAAGAGGAAGACAAGCGATAATCTCAAAGGAATCACACAACATGGAAACGAACTTGACTGCATGTGCTGGCCAAGGTAAATTTACGGAAACAGGCCTACTATAATTAAGACAAGAAAAATCGACTTGAATATAATCTGTTATATAGGATGTTTTGTGTAGAGGAAGCATCCTTGACTTGTTCCCATTTGGTCAGTTTGTGATATGTTCTAAATTATTGTCTGTGCTTATTATCATATCAGAATTTCTTAAATGTTTGATCTGATACTGAACAAACCATTTCGTTTCATGGCCATGTTTTTATCAATTGACTGTAAATGAACAAATTAAAATCATTTTCAATATGTCA
>XM_021602146.2
TCCTTTTTTAACCACAAACAGAATTTGCTTTTATTTaggctatatatattttttaaacaggtTAAAGTCATAGAGATTTTTTTGAAATAGCATTTCGCACTGGAGAGGTGCGCAATGCTTTCGCACGCCGACCTCCTGGATGCTCGCCTCGGGATGAAGGATGCCGCGGCAGAGCTGCTGGGTCACAGGGAGGCTCTGAAGTGCAGGCTAGGTGGTGGAGTTGGACCTGACCCCGGCCACTCCGGCGAGCTAGCCCCGGGGCCAGACACCGTGGAGGGGACCACCATGCTCCCTGGAGACGATATCAACAATGGTGGATCCAACCCTTCCGGCGTGCAGGCCAACAGTAAAGAGCAACAGGACAAGCAGCAGCAGAATAACTCCAGCCAATCCGGAGGAAGTCAGAGTCAGAAACAGAAGCGACACCGGACCCGATTCACTCCAGCCCAACTTAACGAACTGGAGCGCAGCTTCGCCAAAACGCACTACCCAGATATCTTCATGAGGGAGGAACTGGCCCTACGGATCGGCCTAACGGAATCTCGCGTTCAGgtTTGGTTCCAGAACCGACGCGCCAAGTGGAAGAAGCGCAAGAAGACCACCAACGTTTTCCGCGCTCCGGGAACGCTGCTGCCCACCCACCACGGCCTGCACAGTCAGTTCAACTCTGCTGCTGCCGCCGCCGCGGCCATGGGCGACAGCCTGTGCTCCTTCCACGCCAACGACACCCGCTGGGCCACGGCAGGGATGCCAGGCGTCTCTCAGCTGCAGCTCCCTCCAGCCCTGGGTCGCCAGCACCAGCATGCCATGGCGCAGTCCCTGTCCCAGTGCAGCCTGTCCGGCCCGCCGCCCAACTCCATGGGGCTATCCAACATGTCGTCGAACGGATCCGGACTCCAGTCTCACCTCTACCAGAACCCGTTCCCCGGGATGGTCCCGGCCTCCCTGTCCGGTCCCACCAACGTGACGAGCTCTCCCCAGCTGTGTAGCTCCCCGGAAAATGACGTCTGGAGAGGGACGAGCATCGCCTCCCTGCGGCGAAAAGCGCTGGAGCACACAGTATCCATGAGTTTTACTTAGTAGTAGGCCAACCACCACCAAGCCAAGCACCACGTTTTAAGCGTTTTTCTTTTTACTTTGTCATCTatcattttttgttttgttgttgaacACATCCAGCCCAATACAGTTGGACAAGGATGAGAATGTCTCCAAGCAAAAAAAGCAAGGCAGCTGCAAAACAACAGCCACAGATTTGTTGACACACTAATACTAAAACCAAACGATTTGAAGGTGGATAAATGGGTAAATGTTTAGCTTATTCATTTATGATGTGCATGTATTGATTTATAACTTTTATAACTTGATTTATTTTACATGTAGGctatgtatatttatttatttgtttatcattttatttattaaaaaatatatatttaccacCTCGTTTTCATTTTCTTTGTCTATAACAAAATAGTGCTGATATTTGCTACTGGAGTTTCTAACAGTTTCCACCGGCCGATGGTCGAGGGTGTAAAAACGCTCAAAAAAGAATAAAACTCGTTTTTAATGTCACCTGCTGCACAGCATGTAACCATGATTGGCCACGGGCATGCGCAGTGCACGTGCAGATCTCACACACCTGGGAGTTTTTTTTGTTTGAAAAGCATACAAAGATTCATACAACGGAAGAGGAAGACAAGCGATAATCTCAAAGGAATCACACAACATGGAAACGAACTTGACTGCATGTGCTGGCCAAGGTAAATTTACGGAAACAGGCCTACTATAATTAAGACAAGAAAAATCGACTTGAATATAATCTGTTATATAGGATGTTTTGTGTAGAGGAAGCATCCTTGACTTGTTCCCATTTGGTCAGTTTGTGATATGTTCTAAATTATTGTCTGTGCTTATTATCATATCAGAATTTCTTAAATGTTTGATCTGATACTGAACAAACCATTTCGTTTCATGGCCATGTTTTTATCAATTGACTGTAAATGAACAAATTAAAATCATTTTCAATATGTCA
>XM_021602143.2
CCTTTTTTAACCACAAACAGAATTTGCTTTTATTTaggctatatatattttttaaacaggtTAAAGTCATAGAGATTTTTTTGAAATAGCATTTCGCACTGGAGAGGTGCGCAATGCTTTCGCACGCCGACCTCCTGGATGCTCGCCTCGGTGAGTTATCGTCGCCAAACTCCGGTCTTCAACTCTACTGGATGAAGGATGCCGCGGCAGAGCTGCTGGGTCACAGGGAGGCTCTGAAGTGCAGGCTAGGTGGTGGAGTTGGACCTGACCCCGGCCACTCCGGCGAGCTAGCCCCGGGGCCAGACACCGTGGAGGGGACCACCATGCTCCCTGGAGACGATATCAACAATGGTGGATCCAACCCTTCCGGCGTGCAGGCCAACAGTAAAGAGCAACAGGACAAGCAGCAGCAGAATAACTCCAGCCAATCCGGAGGAAGTCAGAGTCAGAAACAGAAGCGACACCGGACCCGATTCACTCCAGCCCAACTTAACGAACTGGAGCGCAGCTTCGCCAAAACGCACTACCCAGATATCTTCATGAGGGAGGAACTGGCCCTACGGATCGGCCTAACGGAATCTCGCGTTCAGGTAACGGAATCTCGCGTGCAGgtTTGGTTCCAGAACCGACGCGCCAAGTGGAAGAAGCGCAAGAAGACCACCAACGTTTTCCGCGCTCCGGGAACGCTGCTGCCCACCCACCACGGCCTGCACAGTCAGTTCAACTCTGCTGCTGCCGCCGCCGCGGCCATGGGCGACAGCCTGTGCTCCTTCCACGCCAACGACACCCGCTGGGCCACGGCAGGGATGCCAGGCGTCTCTCAGCTGCAGCTCCCTCCAGCCCTGGGTCGCCAGCACCAGCATGCCATGGCGCAGTCCCTGTCCCAGTGCAGCCTGTCCGGCCCGCCGCCCAACTCCATGGGGCTATCCAACATGTCGTCGAACGGATCCGGACTCCAGTCTCACCTCTACCAGAACCCGTTCCCCGGGATGGTCCCGGCCTCCCTGTCCGGTCCCACCAACGTGACGAGCTCTCCCCAGCTGTGTAGCTCCCCGGAAAATGACGTCTGGAGAGGGACGAGCATCGCCTCCCTGCGGCGAAAAGCGCTGGAGCACACAGTATCCATGAGTTTTACTTAGTAGTAGGCCAACCACCACCAAGCCAAGCACCACGTTTTAAGCGTTTTTCTTTTTACTTTGTCATCTatcattttttgttttgttgttgaacACATCCAGCCCAATACAGTTGGACAAGGATGAGAATGTCTCCAAGCAAAAAAAGCAAGGCAGCTGCAAAACAACAGCCACAGATTTGTTGACACACTAATACTAAAACCAAACGATTTGAAGGTGGATAAATGGGTAAATGTTTAGCTTATTCATTTATGATGTGCATGTATTGATTTATAACTTTTATAACTTGATTTATTTTACATGTAGGctatgtatatttatttatttgtttatcattttatttattaaaaaatatatatttaccacCTCGTTTTCATTTTCTTTGTCTATAACAAAATAGTGCTGATATTTGCTACTGGAGTTTCTAACAGTTTCCACCGGCCGATGGTCGAGGGTGTAAAAACGCTCAAAAAAGAATAAAACTCGTTTTTAATGTCACCTGCTGCACAGCATGTAACCATGATTGGCCACGGGCATGCGCAGTGCACGTGCAGATCTCACACACCTGGGAGTTTTTTTTGTTTGAAAAGCATACAAAGATTCATACAACGGAAGAGGAAGACAAGCGATAATCTCAAAGGAATCACACAACATGGAAACGAACTTGACTGCATGTGCTGGCCAAGGTAAATTTACGGAAACAGGCCTACTATAATTAAGACAAGAAAAATCGACTTGAATATAATCTGTTATATAGGATGTTTTGTGTAGAGGAAGCATCCTTGACTTGTTCCCATTTGGTCAGTTTGTGATATGTTCTAAATTATTGTCTGTGCTTATTATCATATCAGAATTTCTTAAATGTTTGATCTGATACTGAACAAACCATTTCGTTTCATGGCCATGTTTTTATCAATTGACTGTAAATGAACAAATTAAAATCATTTTCAATATGTCA
>XM_021602144.2
TTTTTTAACCACAAACAGAATTTGCTTTTATTTaggctatatatattttttaaacaggtTAAAGTCATAGAGATTTTTTTGAAATAGCATTTCGCACTGGAGAGGTGCGCAATGCTTTCGCACGCCGACCTCCTGGATGCTCGCCTCGGTGAGTTATCGTCGCCAAACTCCGGTCTTCAACTCTACTGGATGAAGGATGCCGCGGCAGAGCTGCTGGGTCACAGGGAGGCTCTGAAGTGCAGGCTAGGTGGTGGAGTTGGACCTGACCCCGGCCACTCCGGCGAGCTAGCCCCGGGGCCAGACACCGTGGAGGGGACCACCATGCTCCCTGGAGACGATATCAACAATGGTGGATCCAACCCTTCCGGCGTGCAGGCCAACAGTAAAGAGCAACAGGACAAGCAGCAGCAGAATAACTCCAGCCAATCCGGAGGAAGTCAGAGTCAGAAACAGAAGCGACACCGGACCCGATTCACTCCAGCCCAACTTAACGAACTGGAGCGCAGCTTCGCCAAAACGCACTACCCAGATATCTTCATGAGGGAGGAACTGGCCCTACGGATCGGCCTAACGGAATCTCGCGTTCAGgtTTGGTTCCAGAACCGACGCGCCAAGTGGAAGAAGCGCAAGAAGACCACCAACGTTTTCCGCGCTCCGGGAACGCTGCTGCCCACCCACCACGGCCTGCACAGTCAGTTCAACTCTGCTGCTGCCGCCGCCGCGGCCATGGGCGACAGCCTGTGCTCCTTCCACGCCAACGACACCCGCTGGGCCACGGCAGGGATGCCAGGCGTCTCTCAGCTGCAGCTCCCTCCAGCCCTGGGTCGCCAGCACCAGCATGCCATGGCGCAGTCCCTGTCCCAGTGCAGCCTGTCCGGCCCGCCGCCCAACTCCATGGGGCTATCCAACATGTCGTCGAACGGATCCGGACTCCAGTCTCACCTCTACCAGAACCCGTTCCCCGGGATGGTCCCGGCCTCCCTGTCCGGTCCCACCAACGTGACGAGCTCTCCCCAGCTGTGTAGCTCCCCGGAAAATGACGTCTGGAGAGGGACGAGCATCGCCTCCCTGCGGCGAAAAGCGCTGGAGCACACAGTATCCATGAGTTTTACTTAGTAGTAGGCCAACCACCACCAAGCCAAGCACCACGTTTTAAGCGTTTTTCTTTTTACTTTGTCATCTatcattttttgttttgttgttgaacACATCCAGCCCAATACAGTTGGACAAGGATGAGAATGTCTCCAAGCAAAAAAAGCAAGGCAGCTGCAAAACAACAGCCACAGATTTGTTGACACACTAATACTAAAACCAAACGATTTGAAGGTGGATAAATGGGTAAATGTTTAGCTTATTCATTTATGATGTGCATGTATTGATTTATAACTTTTATAACTTGATTTATTTTACATGTAGGctatgtatatttatttatttgtttatcattttatttattaaaaaatatatatttaccacCTCGTTTTCATTTTCTTTGTCTATAACAAAATAGTGCTGATATTTGCTACTGGAGTTTCTAACAGTTTCCACCGGCCGATGGTCGAGGGTGTAAAAACGCTCAAAAAAGAATAAAACTCGTTTTTAATGTCACCTGCTGCACAGCATGTAACCATGATTGGCCACGGGCATGCGCAGTGCACGTGCAGATCTCACACACCTGGGAGTTTTTTTTGTTTGAAAAGCATACAAAGATTCATACAACGGAAGAGGAAGACAAGCGATAATCTCAAAGGAATCACACAACATGGAAACGAACTTGACTGCATGTGCTGGCCAAGGTAAATTTACGGAAACAGGCCTACTATAATTAAGACAAGAAAAATCGACTTGAATATAATCTGTTATATAGGATGTTTTGTGTAGAGGAAGCATCCTTGACTTGTTCCCATTTGGTCAGTTTGTGATATGTTCTAAATTATTGTCTGTGCTTATTATCATATCAGAATTTCTTAAATGTTTGATCTGATACTGAACAAACCATTTCGTTTCATGGCCATGTTTTTATCAATTGACTGTAAATGAACAAATTAAAATCATTTTCAATATGTCA

Function

symbol description
otp Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in fibrillar center and nuclear body.

NR:

description
PREDICTED: homeobox protein orthopedia isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K24901 OTP; homeobox protein orthopedia

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602145.2 False 2057 mRNA 0.48 3 23208733 23214815
XM_021602146.2 False 2035 mRNA 0.48 3 23208734 23214815
XM_021602143.2 False 2094 mRNA 0.48 3 23208735 23214815
XM_021602144.2 True 2071 mRNA 0.48 3 23208737 23214815

Neighbor

gene id symbol gene type direction distance location
tbca tbca coding upstream 5167 23193874 ~ 23203566 (+)
LOC110523451 ap3b1 coding upstream 50713 23065654 ~ 23158020 (+)
lhfpl2a lhfpl2 coding upstream 201418 22942205 ~ 23007315 (+)
dmgdh dmgdh coding upstream 305298 22874170 ~ 22903435 (+)
LOC110523445 LOC106568100 coding upstream 409312 22768665 ~ 22799421 (+)
wdr41 wdr41 coding downstream 22988 23237803 ~ 23251588 (+)
LOC110523456 crhbp coding downstream 156151 23370966 ~ 23391981 (+)
LOC110522829 LOC106567920 coding downstream 206828 23421643 ~ 23422884 (+)
LOC110522830 f2rl2 coding downstream 256173 23470988 ~ 23474212 (+)
LOC110522832 LOC106567816 coding downstream 409106 23623921 ~ 23678038 (+)
G379202 NA non-coding upstream 4634 23203871 ~ 23204099 (+)
G379162 NA non-coding upstream 92704 23115685 ~ 23116029 (+)
G379142 NA non-coding upstream 149986 23058519 ~ 23058747 (+)
G379139 NA non-coding upstream 154088 23054403 ~ 23054645 (+)
G379131 NA non-coding upstream 160042 23048456 ~ 23048691 (+)
G379263 NA non-coding downstream 115553 23330368 ~ 23330594 (+)
G379273 NA non-coding downstream 136290 23351105 ~ 23351363 (+)
G379279 aggf1 non-coding downstream 141191 23356006 ~ 23356429 (+)
G379282 NA non-coding downstream 145409 23360224 ~ 23360688 (+)
G379333 NA non-coding downstream 241550 23456365 ~ 23512877 (+)
G378868 NA other upstream 579064 22602110 ~ 22629669 (+)
G378832 NA other upstream 702463 22503752 ~ 22506270 (+)
G378660 NA other upstream 976813 22172535 ~ 22231920 (+)
LOC110523400 LOC106568542 other upstream 2049814 21108129 ~ 21160149 (+)
G380340 NA other downstream 525619 23740434 ~ 23741459 (+)
LOC110523468 vamp5 other downstream 623709 23838502 ~ 23844345 (+)
G381239 NA other downstream 1472924 24687739 ~ 24776429 (+)
G382186 NA other downstream 2010627 25225442 ~ 25225730 (+)

Expression


Co-expression Network