wdr41 (wdr41)


Basic Information

Item Value
gene id wdr41
gene name wdr41
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23237803 ~ 23251588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977075.1
TCCTGCGCTTCCGTAGTTAGCTACTGTCACATGAATGTTTTGTTGCGAAAGCTCAGCTTGACAGTTTCATGTCAAATTTCACGGGTCTTGGTTTGCCAGCTGGATCTCAAGTGGCAGATTTCCCTACTAAATAACAACGAGATATCCCCGACAGCTATTTTAAAGGCGTCAAGACGACCGTGATCTGGAAACGTCTCACGCCAAATGATTGTTAAGAATCTCCTGCATAGCCATTAGCCAGTCATGCTGCGATGGATACTCGGTGGTCGGGAAGCACAGGGGTCTGTCGAGAAAAACCCTGTGCTATTCATTGGGGAGGAACAGCCCAAAAACTGGTTCACTGAACTGCAGGTGCTAAAAGGACATTTTGACATTGTTCGATTTCTGGTGCAGATTGATGACTTCAGGTTTGCGTCTGCAGGAGACGATGGTCTGGTGTTGGTGTGGAACGTTGAGacaggagagaggctgctggaactaaggggtcacTCCCAGCAGATAACGGCCAtgacagcctacacacacaccagtggagagaacacacacacctccctcatcACAGCTTCCTCGGACCGCACCCTCAGTCTGTGGGACCCAGAGACAGGCAACAGGGTTCAGACCGTCTCAGACCTCCAGTCCTCTGTCAAGTGTCTGCTGGTGTTGGAGCGGTTATGTGTGTGGGTGTCGGGAGGAAATGAGTTGTGTGTGTGGAACAGAGACTTCCAGCTGCAGTGTCAGAGCCAGCACCACGACGACACAGGAATCAGTGCCACGGTGGAGTTGCCTAAGAACTGTATAGCAGCAGCTATGGACAAAGATATAGTGATTTTCAGGCTGACCATGTCCACAGGGTCCCGGTTGTCTGTAGCAGAGGTCAGACGTCTATCTGACCACCAGGACAGCATCCACGCTCTCATCAACATCAATGATGGCCTATTTGCCAGTGGGTCCCATGTTGGCGAGCTGATCCTGTGGGACGCTGTTGATTGGACGATTATGGCCTATGAGCACATCCTGTGGGAGGAGTCTCAGACCGACACCCAGGCTGAGATCCGATTGGCCGCTCCGAAACCCAGTGAGATGTCCATCCAACAGCTGACATCCGATGGAGAGCTGATGGTGGCTGCAGTGGGCAGTGGTCTGTATGTGTACAGCGTCATCACTAAGAGTGTTGTGGCCTACAGGAAGACAGCCCACGACTCCAACGTACTACACACCATGCTGCTGCCTGATGGggggCTGATGTCGTGCTCCGAGGATGGCAGTGTGAGGATTTGGGAGATGCAGGACCTCCTGTTACCTGCAGAACCAGCCTCAGCAGgGTTCTTTGGGATGTGGACTTTCGGCAGGTCCAATAAGCAGGCGGGGCCTCCTGTGAAGAAGGTTCTTGAACTCCCCAGTCTCAGAACATTGGAACTGACGGGCGACCTGATTGGACACTCAGGGGCCGTGCAGATGTTTGTGAGTTTTGGGGAGAAGGGTCTGGTAACATGTTCTACAGACCACCTGCTGATTGCatggaagaacagagagagagagtctcaccTCCGCAGTCTCGCCCTCTTCAGGAAACTGGAGGAGAACGGGGGACTCTGACCACCCACCCCCACCTGTCAGTCACTAACACAATTATTTATGATTTTACAGAACACTTTCTACTGGAAGTTAAGGTTTTAAAGAGGGGTGGAATGTATTTGTTCCTAggtgttgttatttcactgtctCTGAGGttcatggatgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatgacacatccatatatatatataatgtgtacaATGTGATGGATATTTCTTTACCATGTTTGTTGGTTTAGTGATTTTACAACGTGTGAAATTCTGTGTGTTTCAAGTCTTCAATTTTAATCTGATGTTCTTCTATATGCCTGTCTTCAAGTTGGTCACACATTTATTTGATCTGATGTTCTTCTATATGCCTGTCTTCAAGTTGGTCACACATTTATTTGATCTGATGTTCTTCTATATGCCTGTCTTCAAGTTGGTCACACATTTATTTGATCTGATGTTCTTCTATATGCCTGTCTTCAAGTTGGTCACACATTTATTTGATCTGATGTCTGTCTGGATATTTTAACTATTTTAACCCCACAGTTGCTTGTTTTTTTAAAGCCTAAAAATGTCACAAATTAAAGATACAACTGGTCACAAACACCA
>XM_036977076.1
AAAAACCCTGTGCTATTCATTGGGGAGGAACAGCCCAAAAACTGGTTCACTGAACTGCAGGTGCTAAAAGGACATTTTGACATTGTTCGATTTCTGGTGCAGATTGATGACTTCAGacaggagagaggctgctggaactaaggggtcacTCCCAGCAGATAACGGCCAtgacagcctacacacacaccagtggagagaacacacacacctccctcatcACAGCTTCCTCGGACCGCACCCTCAGTCTGTGGGACCCAGAGACAGGCAACAGGGTTCAGACCGTCTCAGACCTCCAGTCCTCTGTCAAGTGTCTGCTGGTGTTGGAGCGGTTATGTGTGTGGGTGTCGGGAGGAAATGAGTTGTGTGTGTGGAACAGAGACTTCCAGCTGCAGTGTCAGAGCCAGCACCACGACGACACAGGAATCAGTGCCACGGTGGAGTTGCCTAAGAACTGTATAGCAGCAGCTATGGACAAAGATATAGTGATTTTCAGGCTGACCATGTCCACAGGGTCCCGGTTGTCTGTAGCAGAGGTCAGACGTCTATCTGACCACCAGGACAGCATCCACGCTCTCATCAACATCAATGATGGCCTATTTGCCAGTGGGTCCCATGTTGGCGAGCTGATCCTGTGGGACGCTGTTGATTGGACGATTATGGCCTATGAGCACATCCTGTGGGAGGAGTCTCAGACCGACACCCAGGCTGAGATCCGATTGGCCGCTCCGAAACCCAGTGAGATGTCCATCCAACAGCTGACATCCGATGGAGAGCTGATGGTGGCTGCAGTGGGCAGTGGTCTGTATGTGTACAGCGTCATCACTAAGAGTGTTGTGGCCTACAGGAAGACAGCCCACGACTCCAACGTACTACACACCATGCTGCTGCCTGATGGggggCTGATGTCGTGCTCCGAGGATGGCAGTGTGAGGATTTGGGAGATGCAGGACCTCCTGTTACCTGCAGAACCAGCCTCAGCAGgGTTCTTTGGGATGTGGACTTTCGGCAGGTCCAATAAGCAGGCGGGGCCTCCTGTGAAGAAGGTTCTTGAACTCCCCAGTCTCAGAACATTGGAACTGACGGGCGACCTGATTGGACACTCAGGGGCCGTGCAGATGTTTGTGAGTTTTGGGGAGAAGGGTCTGGTAACATGTTCTACAGACCACCTGCTGATTGCatggaagaacagagagagagagtctcaccTCCGCAGTCTCGCCCTCTTCAGGAAACTGGAGGAGAACGGGGGACTCTGACCACCCACCCCCACCTGTCAGTCACTAACACAATTATTTATGATTTTACAGAACACTTTCTACTGGAAGTTAAGGTTTTAAAGAGGGGTGGAATGTATTTGTTCCTAggtgttgttatttcactgtctCTGAGGttcatggatgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatgacacatccatatatatatataatgtgtacaATGTGATGGATATTTCTTTACCATGTTTGTTGGTTTAGTGATTTTACAACGTGTGAAATTCTGTGTGTTTCAAGTCTTCAATTTTAATCTGATGTTCTTCTATATGCCTGTCTTCAAGTTGGTCACACATTTATTTGATCTGATGTTCTTCTATATGCCTGTCTTCAAGTTGGTCACACATTTATTTGATCTGATGTTCTTCTATATGCCTGTCTTCAAGTTGGTCACACATTTATTTGATCTGATGTTCTTCTATATGCCTGTCTTCAAGTTGGTCACACATTTATTTGATCTGATGTCTGTCTGGATATTTTAACTATTTTAACCCCACAGTTGCTTGTTTTTTTAAAGCCTAAAAATGTCACAAATTAAAGATACAACTGGTCACAAACACCA

Function

symbol description
wdr41 Predicted to act upstream of or within regulation of autophagy. Orthologous to human WDR41 (WD repeat domain 41).

NR:

description
WD repeat-containing protein 41

GO: NA

KEGG:

id description
K23610 WDR41; WD repeat-containing protein 41

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977075.1 False 2214 mRNA 0.48 14 23237803 23251588
XM_036977076.1 True 1874 mRNA 0.47 11 23238473 23251588

Neighbor

gene id symbol gene type direction distance location
LOC110523452 otp coding upstream 22988 23208733 ~ 23214815 (+)
tbca tbca coding upstream 34237 23193874 ~ 23203566 (+)
LOC110523451 ap3b1 coding upstream 79783 23065654 ~ 23158020 (+)
lhfpl2a lhfpl2 coding upstream 230488 22942205 ~ 23007315 (+)
dmgdh dmgdh coding upstream 334368 22874170 ~ 22903435 (+)
LOC110523456 crhbp coding downstream 119378 23370966 ~ 23391981 (+)
LOC110522829 LOC106567920 coding downstream 170055 23421643 ~ 23422884 (+)
LOC110522830 f2rl2 coding downstream 219400 23470988 ~ 23474212 (+)
LOC110522832 LOC106567816 coding downstream 372333 23623921 ~ 23678038 (+)
vatg1 LOC106567829 coding downstream 458255 23709843 ~ 23711877 (+)
G379202 NA non-coding upstream 33704 23203871 ~ 23204099 (+)
G379162 NA non-coding upstream 121774 23115685 ~ 23116029 (+)
G379142 NA non-coding upstream 179056 23058519 ~ 23058747 (+)
G379139 NA non-coding upstream 183158 23054403 ~ 23054645 (+)
G379131 NA non-coding upstream 189112 23048456 ~ 23048691 (+)
G379263 NA non-coding downstream 78780 23330368 ~ 23330594 (+)
G379273 NA non-coding downstream 99517 23351105 ~ 23351363 (+)
G379279 aggf1 non-coding downstream 104418 23356006 ~ 23356429 (+)
G379282 NA non-coding downstream 108636 23360224 ~ 23360688 (+)
G379333 NA non-coding downstream 204777 23456365 ~ 23512877 (+)
G378868 NA other upstream 608134 22602110 ~ 22629669 (+)
G378832 NA other upstream 731533 22503752 ~ 22506270 (+)
G378660 NA other upstream 1005883 22172535 ~ 22231920 (+)
LOC110523400 LOC106568542 other upstream 2078884 21108129 ~ 21160149 (+)
G380340 NA other downstream 488846 23740434 ~ 23741459 (+)
LOC110523468 vamp5 other downstream 586936 23838502 ~ 23844345 (+)
G381239 NA other downstream 1436151 24687739 ~ 24776429 (+)
G382186 NA other downstream 1973854 25225442 ~ 25225730 (+)

Expression


Co-expression Network